BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54180.1
Length=1635
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495499 jgi|Araly1|495499|fgenesh2_kg.8__1315__AT5G54180.1 2507 0.0
> Ahg495499 jgi|Araly1|495499|fgenesh2_kg.8__1315__AT5G54180.1
Length=1611
Score = 2507 bits (1357), Expect = 0.0
Identities = 1531/1616 (95%), Gaps = 7/1616 (0%)
Strand=Plus/Plus
Query 4 AATCTTTGATTATTAAAGTTAACCCATCTTGGAATCAAACACGACCGTTAAAATCAGAAA 63
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATCTTTGGTTATTAAAGTAAACCCATCTTGGAATCAAACACGACCGTTAAAATCAGAAA 60
Query 64 CCTTGGTTTTGGATATAGCCAGCCATGGTGATCTTATCTCTCGTCTCTTGTTCCTTCTCC 123
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 CCTTGGTTTTGGATAT----AGCCATGGTGATCTTATCTCTAGTCTCTTGTTCCTTCTCC 116
Query 124 GTTTTCTCACCGCCGATTAGTCTCCGGCTTCATCTCCCGCCGGTAACTTCTCTCTGCTCC 183
|||||||||||||||||||||||||| ||||||||||||||||| || |||||||| |||
Sbjct 117 GTTTTCTCACCGCCGATTAGTCTCCGCCTTCATCTCCCGCCGGTTACATCTCTCTGTTCC 176
Query 184 CATGGAACCTTCCCTGCTTCTTCTACATTTCGGTCTCAGCTACAACCATTGCTTATCAGC 243
|||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 177 AATGGAACCTTCCCTACTTCTTCTACATTTCGGTCTCAGCTACAGCCATTTCTTATCAGC 236
Query 244 TGCTTAAATCATCGAGAACCTGCTTTAACTTTCCGATGTAGCTGCCTTAGCTCTCCGATT 303
||||||||||||||||||||| || ||| ||||||| |||| |||||||| || |||
Sbjct 237 TGCTTAAATCATCGAGAACCTTCTCTAATTTTCCGACGTAGTTGCCTTAGTTCAAATATT 296
Query 304 GAATCCGGAAGTCAAATTGAATCTCTGTTTTCGTTATTCCGAGATATTGGGTTTATAGAA 363
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 297 GACGCCGGAAGTCAAATTGAGTCTCTGTTTTCGTTATTCCGAGATATTGGGTTTATAGAA 356
Query 364 GAAGAAACTGAGATGATTTTAGCGAAGAACCCAGATATAAAGTCGACATCTTTGGATAAA 423
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 357 GAAGAAACTGAGATGATTTTAGCGAAGAACCCAGATATAAAGTCGGCATCTTTGGATAAA 416
Query 424 ATCGGTGCTCGTGTTGCTTCTCTTCAGTCTCTGAAAATCAATGGCTTCCCGCTTCAGGGT 483
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 417 ATCGGTGCTCGTGTTGCTTCTCTTCAGTCTCTGAAAATCGATGGCTTTGCGCTTCAGGGT 476
Query 484 TTGATAGCTAAGTGCCCTAATTTATTGACTTCAGAAGAATTTGATCTCGTTATTAGTTTC 543
||||| || ||||| ||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 477 TTGATTGCAAAGTGTCCTAATTTATTGACTTCAGAAGAATTTGATCCCATTATTAGTTTC 536
Query 544 TTAGTTGATGAACTTGAAGGAAGGCTTGATCCTGAATTAGTTGAGCGCTTACTCTCTGTG 603
|| ||||||||||| |||| |||||||||||||||| |||| ||||||||||||||||||
Sbjct 537 TTGGTTGATGAACTCGAAGCAAGGCTTGATCCTGAACTAGTGGAGCGCTTACTCTCTGTG 596
Query 604 GTAGACACATCTATCTTGCTTAGTTTTAATCAGAAGGTGAGATTGCTTCTCCTCCATGGG 663
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GTAGACACATCTATCTTGCTTAGTTTTAATCAGAAGGTGAGATTGCTTCTCCTCCATGGA 656
Query 664 ATACCTAAAGAAAAGATCTCTCATGTATTGAACAAAGTGTACCTAAATAAATTGCTGTAT 723
|| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 657 ATCCCTAAAGAAAAGATCTCTCATGTATTGAACAAAGTGTATCTAAATAAACTGCTGTAT 716
Query 724 CAGAAATCAGTTGAAGATATTGAGAGATTGATTAGTTTCTTGGAACCTTTTGGTGGAATT 783
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CAGAAATCAGTTGAGGACATTGAGAGATTGATTAGTTTCTTGGAACCTTTTGGTGGAATC 776
Query 784 GGTATAATTGCTAGGCGGCCAGTGATTCTCAATAGTGACTTGGATAGTCAGTTGATTCCT 843
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 777 GGTATAATTGCGAGGCGGCCAGTGATTCTCAACAGTGACTTGGATAGTCAGTTGATTCCT 836
Query 844 AGGGTTGATTTCATTAGGAATCTAAGCGGGGAAGACGATTTCGCTACTGGAACGGTGCTA 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AGGGTTGATTTCATTAGGAATCTAAGCGGGGAAGACGATTTCGCTACTGGAACGGTGCTA 896
Query 904 CGTAGACTTCCTGCCATATTGAGTTATAGTGTTGAGCATATGAACGGCCAAGTAGAGTTT 963
|||||||||||||||||||||||||| |||||||||||||||||| |||| || ||||||
Sbjct 897 CGTAGACTTCCTGCCATATTGAGTTACAGTGTTGAGCATATGAACAGCCACGTCGAGTTT 956
Query 964 CTCAAGTCTTTTGCTGGCTTGACGAGTGAGCAAGTGTTTAAGATTGTTCATGTGTTCCCT 1023
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 957 CTCAAGTCTTTTGCTGGCTTGACGAGCGAGCAAGTTTTTAAGATTGTTCATGTGTTCCCG 1016
Query 1024 AATGTTATCAGCACTAGTAAAGAGAGGAAACTGCGCCCGAGGATAGAGTTTCTGAAGGAA 1083
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1017 AATGTTATCAGCACTAGTAAAGAGAGGAAGCTGCGTCCGAGGATAGAGTTTCTGAAGGAA 1076
Query 1084 TGCGGCTTTGATTCCCCCGGCATGTTCAAATTCTTGAGTAAAGCACCATTGATTTTAGCT 1143
|| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1077 TGTGGCTTTGATTCCCCCGGCATGTTCAAATTCTTGAGTAAAGCACCGTTGATTCTAGCT 1136
Query 1144 CTATCCGAAAATAATCTCTCGCACAAACTCGG-TTTTCTGGTGAAGATTGGATATAAGCA 1202
||||| ||| |||||||||||||||||||||| |||| | || |||||||||||||||||
Sbjct 1137 CTATCTGAAGATAATCTCTCGCACAAACTCGGGTTTT-TAGTAAAGATTGGATATAAGCA 1195
Query 1203 TAGAACAAAGGAACTGGCCTTTGCGATGGGAGCTGTGACCAGAACAAGCTCTGACAATAT 1262
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 CAGAACAAAGGAACTGGCCTTTGCGATGGGAGCTGTGACCAGAACAAGCTCTGACAATAT 1255
Query 1263 GCAGAGGGTTATTGGACTGTACTTGAGTTATGGTCTTTCATTCGAAGACATTCTAGCAAT 1322
||||||||| ||||||||||||||||| || |||||||| | ||||||||||||||| ||
Sbjct 1256 GCAGAGGGTAATTGGACTGTACTTGAGCTACGGTCTTTCGTACGAAGACATTCTAGCGAT 1315
Query 1323 GAGCACAAAACATCCTCAAGTCCTGCAGTATAATTATACTTCTTTAGAGGAAAAACTGGA 1382
||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1316 GAGCACAAAGCATCCTCAAGTCCTGCAGTATAATTATAGTTCTTTAGAAGAAAAACTGGA 1375
Query 1383 GTATTTGATCGAGTACATGGGTCGTGAAGTCGAAGAACTTCTTGCATTCCCTGCATTTCT 1442
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1376 GTATTTGATCGAGTACATGGGTCGTGAAGTCGAAGAGCTTCTTGCATTCCCTGCATTTCT 1435
Query 1443 TGGATACAAGCTTGATAGCAGGATCAAGCATCGGTATGAAGAAAAGTTGAAGAGCAGAGG 1502
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 TGGGTACAAGCTTGATAGCAGGATCAAGCATCGGTATGAAGAAAAGTTGAAGAGCAGAGG 1495
Query 1503 TGAGAACATGTCTCTTAACAAGCTTTTGACAGTATCAGCTGAAAGATTCTCTAAGGCGGC 1562
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1496 TGAGAACATGTCTCTTAACAAGCTTTTGACAGTGTCAGCTGAAAGATTCTCTAAGGCGGC 1555
Query 1563 TGATAATATCGAAATGATTTGTTTATGA-CCAAGTTTGAGTTCATTGAGAACTTAC 1617
||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1556 TGATAATATTGAAATGATTTGTTTATGAACCAAGTTTGAGTTCATTGAGAAGTTAC 1611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61287204205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5