BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54190.1
Length=1441
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495501 jgi|Araly1|495501|fgenesh2_kg.8__1317__AT5G54190.1 2180 0.0
Ahg359798 jgi|Araly1|359798|fgenesh1_pg.C_scaffold_1072000001 1572 0.0
Ahg492051 jgi|Araly1|492051|fgenesh2_kg.7__1484__AT4G27440.1 1055 0.0
> Ahg495501 jgi|Araly1|495501|fgenesh2_kg.8__1317__AT5G54190.1
Length=1397
Score = 2180 bits (1180), Expect = 0.0
Identities = 1329/1401 (95%), Gaps = 10/1401 (1%)
Strand=Plus/Plus
Query 21 TTAAGTCTTAAACGAAACAATGGCCCTTCAAGCTGCTTCTTTGGTCTCCTCTGCTTTCTC 80
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTAAGTCTTAAAAGAAACAATGGCCCTTCAAGCTGCTTCTTTGGTCTCCTCTGCTTTCTC 60
Query 81 TGTCCGCAAAGATGGAAAATTAAATGCTTCAGCATCATCATCATTCAAAGAGTCTAGTCT 140
|||||| |||||||||||||| ||||||| | |||||||||||||||||||| |||||
Sbjct 61 TGTCCGAAAAGATGGAAAATTGAATGCTT---CTTCATCATCATTCAAAGAGTCGAGTCT 117
Query 141 GTTCGGTGTTTCACTTTCGGAGCAAAGCAAAGCTGACTTTGTCTCTTCCTCATTGAGATG 200
||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 118 GTTTGGTGTTTCACTATCGGAGCATAGCAAAGCTGACTTTGTCTCTTCTTCATTGAGATG 177
Query 201 CAAGAGGGAACAGAGCTTGAGGAATAATAAAGCGATTATTCGAGCTCAAGCAATCGCGAC 260
|||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 178 CAAGAGGGAACAAAGCTTGAGGAATAACAAAGCAATTATTCGAGCTCAAGCAATCGCGAC 237
Query 261 TTCAACTCCATCAGTCACAAAATCTTCCTTAGACCGCAAGAAAACACTTAGAAAAGGAAA 320
|||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 238 TTCAACACCATCGGTCACAAAATCGTCCTTAGACCGCAAGAAAACCCTTAGAAAAGGAAA 297
Query 321 CGTGGTTGTCACGGGAGCTTCTTCAGGGCTAGGTTTAGCAACGGCAAAGGCATTAGCCGA 380
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 298 CGTGGTTGTCACGGGAGCTTCTTCAGGGTTAGGGTTAGCAACGGCAAAGGCATTAGCCGA 357
Query 381 GACAGGTAAATGGCACGTGATAATGGCGTGCAGAGACTTCCTCAAGGCTGAGAGAGCCGC 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GACAGGTAAATGGCACGTGATAATGGCGTGCAGAGACTTCCTCAAGGCTGAGAGAGCCGC 417
Query 441 TCAATCTGCAGGGATGCCTAAGGACAGCTACACTGTGATGCATTTGGACTTGGCGTCTTT 500
|||||| || || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 418 TCAATCCGCTGGCATGCCTAAGGACAGCTACACTGTGATGCATTTGGACTTAGCGTCTTT 477
Query 501 GGACAGCGTGAGGCAGTTTGTTGATAACTTCAGGCGAGCTGAGATGCCTCTCGATGTGTT 560
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 478 GGACAGCGTGAGGCAGTTCGTTGATAACTTCAGGCGAGCCGAGATGCCTCTCGATGTGTT 537
Query 561 GGTCTGCAATGCCGCAGTCTATCAGCCAACGGCTAATCAACCTACTTTCACTGCTGAAGG 620
|||||||||||| || || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 538 GGTCTGCAATGCTGCGGTTTATCAGCCAACAGCTAATCAACCTACTTTCACTGCTGAAGG 597
Query 621 GTTTGAGCTTAGCGTTGGGATAAACCATTTGGGCCACTTTCTTCTTTCAAGATTGTTGAT 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GTTTGAGCTTAGCGTTGGGATAAACCATTTGGGCCACTTTCTTCTTTCAAGATTGTTGAT 657
Query 681 TGATGACTTGAAGAACTCCGATTATCCATCAAAACGTCTCATCATTGTTGGATCCATAAC 740
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TGATGACTTAAAGAACTCCGATTATCCATCAAAACGTCTCATCATTGTTGGATCCATAAC 717
Query 741 CGGAAACACTAATACATTGGCTGGTAATGTACCTCCAAAGGCTAATCTTGGTGATTTGAG 800
|||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 718 CGGAAATACTAATACATTGGCGGGTAATGTACCTCCGAAGGCGAATCTTGGTGATTTGAG 777
Query 801 GGGACTAGCAGGCGGGTTGAACGGGCTAAACAGCTCGGCGATGATAGATGGAGGAGATTT 860
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GGGATTAGCAGGTGGGTTGAACGGGCTAAACAGCTCGGCGATGATAGATGGAGGAGATTT 837
Query 861 TGTTGGCGCAAAGGCGTATAAAGATAGCAAAGTCTGCAACATGTTGACAATGCAGGAGTT 920
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 838 CGTTGGGGCAAAGGCGTATAAAGATAGCAAAGTCTGCAACATGTTGACAATGCAAGAGTT 897
Query 921 TCATAGGCGTTTCCATGAAGACACCGGCATAACTTTTGCTTCCCTTTACCCCGGTTGTAT 980
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 898 TCATAGGCGTTTCCATGAAGACACCGGCATAACTTTTGCTTCCCTGTACCCCGGTTGTAT 957
Query 981 TGCAACGACTGGTTTGTTCAGAGAGCATATTCCTCTTTTCCGTACCCTCTTCCCTCCTTT 1040
|| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 958 CGCGACAACTGGTTTGTTCAGAGAGCATATTCCTCTCTTCCGTACCCTCTTCCCTCCTTT 1017
Query 1041 CCAGAAGTACATCACAAAAGGTTACGTCTCCGAGTCAGAGGCTGGGAAAAGACTTGCTCA 1100
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1018 CCAGAAGTACATCACAAAAGGTTACGTCTCCGAGACAGAGGCTGGGAAAAGACTTGCTCA 1077
Query 1101 GGTGGTGGCTGATCCAAGCTTGACGAAGTCGGGAGTGTATTGGAGCTGGAACAAGACCTC 1160
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GGTGGTGGGTGACCCAAGCTTGACGAAGTCGGGAGTGTATTGGAGCTGGAACAAGACCTC 1137
Query 1161 GGCTTCATTTGAGAATCAGCTGTCTCAAGAAGCTAGCGATGTCGAGAAGGCTCGTAGAGT 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GGCTTCATTTGAGAATCAGCTGTCTCAAGAAGCTAGCGATGTCGAGAAGGCTCGTAGAGT 1197
Query 1221 TTGGGAAGTCAGCGAGAAGCTCGTAGGCTTGGCCTAAAATTTGATATGAGATTTTTCCTC 1280
||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||
Sbjct 1198 TTGGGAAGTCAGCGAGAAGCTCGTAGGCTTGGCCTAAAAATTGATATGAGACTCTTCCTC 1257
Query 1281 GGTGTTTCAACCTTTGGTTTGGCTTAAGATGAGAAACAAACAAAAAAGGAGACATTAATA 1340
|||||| |||||||||||| ||||||||||| ||| |||||||| |||||||||| |||
Sbjct 1258 TGTGTTTTAACCTTTGGTTTTGCTTAAGATGATAAATAAACAAAAGAGGAGACATTGATA 1317
Query 1341 AAGCCTGTAACAA--C---TTTGA-TTTAGTAGTTGTGTTTTGGCTGATTCTATCTGTAA 1394
|| | |||| ||| | ||||| ||| ||||||||||||||||| ||||||||||| |
Sbjct 1318 AATCTTGTACCAAATCAAATTTGACTTT-GTAGTTGTGTTTTGGCTAATTCTATCTGTGA 1376
Query 1395 TGAAACAAATAATTCCACTTT 1415
||||| |||||||||||||||
Sbjct 1377 TGAAATAAATAATTCCACTTT 1397
> Ahg359798 jgi|Araly1|359798|fgenesh1_pg.C_scaffold_1072000001
Length=1008
Score = 1572 bits (851), Expect = 0.0
Identities = 934/975 (96%), Gaps = 2/975 (0%)
Strand=Plus/Plus
Query 199 TGCAAGAGGGAACAGAGCTTGAGGAATAATAAAGCGATTATTCGAGCTCAAGCAATCGCG 258
||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 35 TGC-AGAGGGAACAAAGCTTGAGGAATAATAAAGCAATTATTCGAGCTCAAGCAATCGCG 93
Query 259 ACTTCAACTCCATCAGTCACAAAATCTTCCTTAGACCGCAAGAAAACACTTAGAAAAGGA 318
|||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 94 ACTTCAACACCATCGGTCACAAAATCGTCCTTAGACCGCAAGAAAACCCTTAGAAAAGGA 153
Query 319 AACGTGGTTGTCACGGGAGCTTCTTCAGGGCTAGGTTTAGCAACGGCAAAGGCATTAGCC 378
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 154 AACGTGGTTGTCACGGGAGCTTCTTCAGGGTTAGGGTTAGCAACGGCAAAGGCATTAGCC 213
Query 379 GAGACAGGTAAATGGCACGTGATAATGGCGTGCAGAGACTTCCTCAAGGCTGAGAGAGCC 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 GAGACAGGTAAATGGCACGTGATAATGGCGTGCAGAGACTTCCTCAAGGCTGAGAGAGCC 273
Query 439 GCTCAATCTGCAGGGATGCCTAAGGACAGCTACACTGTGATGCATTTGGACTTGGCGTCT 498
|||||||| || || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 274 GCTCAATCCGCTGGCATGCCTAAGGACAGCTACACTGTGATGCATTTGGACTTAGCGTCT 333
Query 499 TTGGACAGCGTGAGGCAGTTTGTTGATAACTTCAGGCGAGCTGAGATGCCTCTCGATGTG 558
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 334 TTGGACAGCGTGAGGCAGTTCGTTGATAACTTCAGGCGAGCCGAGATGCCTCTCGATGTG 393
Query 559 TTGGTCTGCAATGCCGCAGTCTATCAGCCAACGGCTAATCAACCTACTTTCACTGCTGAA 618
|||||||||||||| || || ||||||||||| |||||||||||||||||||||||||||
Sbjct 394 TTGGTCTGCAATGCTGCGGTTTATCAGCCAACAGCTAATCAACCTACTTTCACTGCTGAA 453
Query 619 GGGTTTGAGCTTAGCGTTGGGATAAACCATTTGGGCCACTTTCTTCTTTCAAGATTGTTG 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 GGGTTTGAGCTTAGCGTTGGGATAAACCATTTGGGCCACTTTCTTCTTTCAAGATTGTTG 513
Query 679 ATTGATGACTTGAAGAACTCCGATTATCCATCAAAACGTCTCATCATTGTTGGATCCATA 738
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 ATTGATGACTTAAAGAACTCCGATTATCCATCAAAACGTCTCATCATTGTTGGATCCATA 573
Query 739 ACCGGAAACACTAATACATTGGCTGGTAATGTACCTCCAAAGGCTAATCTTGGTGATTTG 798
|||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 574 ACCGGAAATACTAATACATTGGCGGGTAATGTACCTCCGAAGGCGAATCTTGGTGATTTG 633
Query 799 AGGGGACTAGCAGGCGGGTTGAACGGGCTAAACAGCTCGGCGATGATAGATGGAGGAGAT 858
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 AGGGGATTAGCAGGTGGGTTGAACGGGCTAAACAGCTCGGCGATGATAGATGGAGGAGAT 693
Query 859 TTTGTTGGCGCAAAGGCGTATAAAGATAGCAAAGTCTGCAACATGTTGACAATGCAGGAG 918
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 694 TTCGTTGGGGCAAAGGCGTATAAAGATAGCAAAGTCTGCAACATGTTGACAATGCAAGAG 753
Query 919 TTTCATAGGCGTTTCCATGAAGACACCGGCATAACTTTTGCTTCCCTTTACCCCGGTTGT 978
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 754 TATCATAGGCGTTTCCATGAAGACACCGGCATAACTTTTGCTTCCCTGTACCCCGGTTGT 813
Query 979 ATTGCAACGACTGGTTTGTTCAGAGAGCATATTCCTCTTTTCCGTACCCTCTTCCCTCCT 1038
|| || || ||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 814 ATCGCGACAACTGGTTTGTTCAGAGAACATATACCTCTCTTCCGTACCCTCTTCCCTCCT 873
Query 1039 TTCCAGAAGTACATCACAAAAGGTTACGTCTCCGAGTCAGAGGCTGGGAAAAGACTTGCT 1098
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 874 TTCCAGAAGTACATCACAAAAGGTTACGTCTCCGAGACAGAGGCTGGGAAAAGACTTGCT 933
Query 1099 CAGGTGGTGGCTGATCCAAGCTTGACGAAGTCGGGAGTGTATTGGAGCTGGAAC-AAGAC 1157
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 934 CAGGTGGTGGGTGACCCAAGCTTGACGAAGTCGGGAGTGTATTGGAGCTGGAACCAAGAC 993
Query 1158 CTCGGCTTCATTTGA 1172
|||||||||||||||
Sbjct 994 CTCGGCTTCATTTGA 1008
> Ahg492051 jgi|Araly1|492051|fgenesh2_kg.7__1484__AT4G27440.1
Length=1510
Score = 1055 bits (571), Expect = 0.0
Identities = 1022/1237 (83%), Gaps = 42/1237 (3%)
Strand=Plus/Plus
Query 36 AACAATGGCCCTTCAAGCTGCTTCTTTGGTCTCCTCTGCTTTCTCTGTCCGCAAAGATG- 94
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 67 AACAATGGCCCTTCAAGCTGCTTCTTTGGTCTCCTCTGCTTTCTCTGTCCGAAAAGATGC 126
Query 95 GAAAATTAAATGCTTCAGCATCATCATCATTCAAAGAGTCTAGTCTGTTCGGTGTTTCAC 154
|||| || |||||||| |||| || | ||||| || |||||||| || |||| || |
Sbjct 127 GAAA-TTGAATGCTTCTTCATCGTC-T--TTCAAGGACTCTAGTCTATTTGGTGCCTC-C 181
Query 155 TTT-CGGAGCAAAGCAAAGCTGA-CTTTGTCTCTTCCTCATTGAGATGCAAGAGGGAACA 212
|| | || |||| |||| | || | | | |||||||| || |||| |||||| |||||
Sbjct 182 ATTACCGACCAAATCAAATCCGAACATGGA-TCTTCCTCGTTAAGATTCAAGAGTGAACA 240
Query 213 GAGCTTGAGGAATAATAAAGCGATTATTCGAGCTCAAGCAA-TCGCGACTTCAA-CTCC- 269
||||| |||| | || || | |||||||| ||| | | |||||||||| | ||
Sbjct 241 TAGCTTAAGGAGTC-TA--GC-A--ATTCGAGCCCAAACCGCT-GCGACTTCAAGC-CCT 292
Query 270 ATCAGTCACAAAATCTTCCTTAGACCGCAAGAAAACACTT-AGAAAAGGAAACGTGGTTG 328
| | || |||||||| | | ||| |||||||||| || || |||||||| ||||| |
Sbjct 293 A-CGGTTACAAAATC--CGTG-GACGGCAAGAAAACG-TTGAGGAAAGGAAATGTGGTGG 347
Query 329 TCACGGGAGCTTCTTCAGGGCTAGGTTTAGCAACGGC-AAAGGCAT-TAGCCGAGACAGG 386
| || ||||| || || || ||||| |||| ||||| |||| | | |||||||||||||
Sbjct 348 TGACTGGAGCCTCGTCTGGATTAGGTCTAGCCACGGCTAAAG-C-TCTAGCCGAGACAGG 405
Query 387 TAAATGGCACGTGATAATGGCGTGCAGAGACTTCCTCAAGGCTGAGAGAGCCGCTCAATC 446
||||||||||||||| |||||||||||||||||||| || || |||||||||||| ||||
Sbjct 406 TAAATGGCACGTGATTATGGCGTGCAGAGACTTCCTTAAAGCCGAGAGAGCCGCTAAATC 465
Query 447 TGCAGGGATGCCTAAGGACAGCTACACTGTGATGCATTTGGACTTGGCGTCTTTGGACAG 506
||||||||||||||| ||||||||||| ||||||||||| ||||| || || ||||||||
Sbjct 466 TGCAGGGATGCCTAAAGACAGCTACACAGTGATGCATTTAGACTTAGCCTCGTTGGACAG 525
Query 507 CGTGAGGCAGTTTGTTGATAACTTCAGGCGAGCTGAGATGCCTCTCGATGTGTTGGTCTG 566
|||||| ||||| ||||||||||||||| || | ||||||||||||||||| ||||||||
Sbjct 526 CGTGAGACAGTTCGTTGATAACTTCAGGAGAACAGAGATGCCTCTCGATGTTTTGGTCTG 585
Query 567 CAATGCCGCAGTCTATCAGCCAACGGCTAATCAACCTACTTTCACTGCTGAAGGGTTTGA 626
|||||| || || ||| || || ||||| | ||||||| || |||||||||||||||
Sbjct 586 CAATGCTGCGGTTTATTTCCCGACAGCTAAAGAGCCTACTTACAGTGCTGAAGGGTTTGA 645
Query 627 GCTTAGCGTTGGGATAAACCATTTGGGCCACTTTCTTCTTTCAAGATTGTTGATTGATGA 686
||||||||||| || || |||||||| || |||||||| |||| |||||| |||||||
Sbjct 646 GCTTAGCGTTGCGACGAATCATTTGGGACATTTTCTTCTCGCAAGGTTGTTGCTTGATGA 705
Query 687 CTTGAAGAACTCCGATTATCCATCAAAACGTCTCATCATTGTTGGATCCATAACCGGAAA 746
||||||||| || ||||| || ||||| ||||||||||| || || ||||| ||||| ||
Sbjct 706 CTTGAAGAAATCTGATTACCCTTCAAAGCGTCTCATCATCGTCGGGTCCATTACCGGGAA 765
Query 747 CACTAATACATTGGCTGGTAATGTACCTCCAAAGGCTAATCTTGGTGATTTGAGGGGACT 806
||| ||||||||||| ||||||||||| || ||||| ||||| |||||||||||||| |
Sbjct 766 CACGAATACATTGGCGGGTAATGTACCACCGAAGGCGAATCTCGGTGATTTGAGGGGTTT 825
Query 807 AGCAGGCGGGTTGAACGGGCTAAACAGCTCGGCGATGATAGATGGAGGAGATTTTGTTGG 866
||| ||||| || ||||| |||||||||| || ||||| |||||||||||||| | ||
Sbjct 826 AGCCGGCGGATTAAACGGTTTAAACAGCTCAGCTATGATTGATGGAGGAGATTTCGACGG 885
Query 867 CGCAAAGGCGTATAAAGATAGCAAAGTCTGCAACATGTTGACAATGCAGGAGTTTCATAG 926
|||||||| || ||||| || |||||||||||||||||||| ||||| |||||||| ||
Sbjct 886 TGCAAAGGCTTACAAAGACAGTAAAGTCTGCAACATGTTGACGATGCAAGAGTTTCACAG 945
Query 927 GCGTTTCCATGAAGACACCGGCA-TAACTTTTGCTTCCCTTTACCCCGGTTGTATTGCAA 985
||||| ||||||||| || || | | ||||| ||||| |||||||||||||| || ||
Sbjct 946 GCGTTACCATGAAGAAACTGG-AGTCACTTTCGCTTCGCTTTACCCCGGTTGCATCGCCT 1004
Query 986 CGACTGGTTTGTTCAGAGAGCATATTCCTCTTTTCCGTACCCTCTTCCCTCC-TTTCCAG 1044
| || ||||| ||| |||| || ||||| || |||||| ||||||||||||| |||| ||
Sbjct 1005 CCACGGGTTTATTCCGAGATCACATTCCGCTCTTCCGTGCCCTCTTCCCTCCCTTTC-AG 1063
Query 1045 AAGTACATCACAAAAGGTTACGTCTCCGAGTCAGAGGCTGGGAAAAGACTTGCTCAGGTG 1104
||||||||||| ||||| || ||||||||| ||||| | || ||||||||||||||||||
Sbjct 1064 AAGTACATCACTAAAGGATATGTCTCCGAGACAGAGTCAGGCAAAAGACTTGCTCAGGTG 1123
Query 1105 GTG-GCTGATCCAAGCTTGACGAAGTC-GGGAGTGTATTGGAGCTGGAACAA-GACCTCG 1161
||| | |||||| ||||||||||| || ||| || ||||||||||||||||| | | ||
Sbjct 1124 GTGAG-TGATCCGAGCTTGACGAAATCAGGG-GTTTATTGGAGCTGGAACAATG-CTTCA 1180
Query 1162 GCTTCATTTGAGAATCAGCTGTCTCAAGAAGCTAGCGATGTCGAGAAGGCTCGTAGAGTT 1221
|| || |||||||| ||| | || ||||||| || || || ||||||||||||| |||
Sbjct 1181 GCATCTTTTGAGAACCAGTTATCAGAAGAAGCAAGTGACGTTGAGAAGGCTCGTAAAGTG 1240
Query 1222 TGGGA-AGTCAGCGAGAAGCTCGTAGGCTTGGCCTAA 1257
||||| | |||| ||||||||||| ||||||||||||
Sbjct 1241 TGGGAGA-TCAGTGAGAAGCTCGTGGGCTTGGCCTAA 1276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53897696675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5