BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54200.1
Length=2694
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495503 jgi|Araly1|495503|fgenesh2_kg.8__1319__AT5G54200.1 4154 0.0
> Ahg495503 jgi|Araly1|495503|fgenesh2_kg.8__1319__AT5G54200.1
Length=2719
Score = 4154 bits (2249), Expect = 0.0
Identities = 2576/2728 (94%), Gaps = 46/2728 (2%)
Strand=Plus/Plus
Query 1 atgatgaagatgatgatgatgaATCGAA--GACGAAGCAACGTCGTTAGATTTGAAGCTa 58
||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGATGAAGATGATGATGATG-AT-GAATCGACGAAGCAACGTCGTTAGATTTGAAGCTA 58
Query 59 agaaagaagacaaagtagaagaagaagaTAACAATGACGATTGTTTCTATGAGTCTCTAG 118
|||||| |||| ||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 59 AGAAAGTAGACGAAGAAGAAGAAGAAGATAATAATGACGATTGTTTCTATGAGTCTCTAG 118
Query 119 ATCGTGTACTATCGTCTTGCTCTTGTTCAACTTCAAACTCTGATTACGACTCTGACCCGA 178
|||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 119 ATCGTGTATTATCTTCTTGCTCTTGTTCTACTTCAAACTCTGATTACGACTCTGACCCGA 178
Query 179 ATGTTTCCGATTCGATCCACGATCCGACTCCGTTTCCTGTTCCTATG-----T-TT---A 229
||||||| |||||||| |||||||||| |||||||||||||||| || | || |
Sbjct 179 ATGTTTCTGATTCGATTCACGATCCGAGTCCGTTTCCTGTTCCTGTGTTTCCTATTGGAA 238
Query 230 CCTCTGGGTTCGAGCTGTGGAAATCTGAGCCTGAATCTGTGTCGGAGAGACGAATCAGGT 289
||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 239 GCTCTGGGTTTGAGCTTTGGAAATCTGAGCCTGAATCTGTGAAGGAGAGACGAATCAGGT 298
Query 290 TATTGCGTGGTTTGGGACTTAGTAATGAGCCGGATCTACCTCCGGCGAGTCAGTTACGTT 349
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 299 TATTGCGTGGTTTGGGACTTAGTAATGAGCCGGATCTACCTCCGGTGAGTCAGTTACGGT 358
Query 350 CTAGAAGTCGGAGAAACAGTTCTCATTTCTCTAGATCGGTTCCTTCTGATGTTTTGACTT 409
||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||| ||
Sbjct 359 CTAGAAGTCGGAGAAACAGTTCTCATTTCGCTAGATCGGTTTCGTCTGATGTTTTGATTT 418
Query 410 CGAATCATCATGGTAAATGTGTGTTGAGATCAGATGTAT-CAGGTACTGACAATGTCGAT 468
|||||||||||||||||||||| |||||||||||||| | |||||| |||||||||||||
Sbjct 419 CGAATCATCATGGTAAATGTGTATTGAGATCAGATGT-TGCAGGTAGTGACAATGTCGAT 477
Query 469 CGAGAGTATACTGGATCTCGTATGCGAAACGATGGTGTTGATTTTATAAGCAAAGAGCCA 528
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CGAGAGTATACTGGATCTCGTATGCGAAACGATGGTGTTGATTTTATAAGCAAAGAGCCG 537
Query 529 ATGGAAAGATCTCTTAGGGACATTGT--AGAGA-A-AG--A---GAATGGTAGAGATGTT 579
|||| ||||||||||||||||||||| ||||| | || | |||||| |||||||||
Sbjct 538 ATGGTAAGATCTCTTAGGGACATTGTAGAGAGAGAGAGTTATGGGAATGGGAGAGATGTT 597
Query 580 GTTTTAGAGGAGCAAATGTGTACTATTAGGAATTTAGATACTGGGAGAGAGTTTGTGGTG 639
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 598 GTTTTGGAGGAGCAAATGTGTACCATTAGGAATTTAGATACTGGGAGAGAGTTTGTGGTG 657
Query 640 AATGAAGTTCGAGAAGATGGGATGTTGGAGAGGTTGAAGGAAGTAGGTACTGATCGGCAA 699
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 658 AATGAAGTTCGAGAAGATGGAATGTTGGATAGGTTGAAGGAAGTAGGTACTGATCGGCAA 717
Query 700 TTGACTCTGGAGGAGTTTGAGATTTGTGTTGGTACGTCACCGATTGTGCTTGAGTTGATG 759
||||||||||||||||||||||| |||||||| || |||||||||||||| |||||||||
Sbjct 718 TTGACTCTGGAGGAGTTTGAGATGTGTGTTGGGACATCACCGATTGTGCTCGAGTTGATG 777
Query 760 AGGAGGCAAAATGTTGAAGATGTTTGTAAAGACTCTGTGGATTTGGATACTAATGTTAGT 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AGGAGGCAAAATGTTGAAGATGTTTGTAAAGACTCTGTGGATTTGGATACTAATGTTAGT 837
Query 820 GGAAGCAGGGTGACTAAACATAGAAGGAGAGGGAGTTGGTTAAAGAGTATTAAGAATGTT 879
||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||
Sbjct 838 GGAAGCAGGGTGACTAAGCATAGAAGGAGAGGGAGTTGGCTAAAGAGTATAAAGAATGTT 897
Query 880 GCTAGTAGTGTGACTGGGTATAAAGAGCGACGGAGCACCGATGATAGGGATTCACCGTCT 939
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 898 GCTAGTAGTGTGACCGGGTATAAAGAGCGACGGAGCACTGATGATAGGGATTCACCGTCT 957
Query 940 GAGAGAGGTGGTCAGAGGTTTAGCTCTGCAACTGATGATAGTC-GAGATATGTCTTTTCA 998
||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||
Sbjct 958 GAGAGAGGTGGTCAGAGGTTTAGCTCTGCAACTGATGATAG-CAGAGATATGTCCTTTCA 1016
Query 999 TGACCCTGAGAGAGTTAAGGTTAGGCAGTATGGGAAGTCGTGTAAAGAGCTTACTGCACT 1058
||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 1017 TGACCCTGAGAGAGTTAAGGTTAGGCAGTATGGGAAGTCATGTAAAGAGCTCACAGCACT 1076
Query 1059 TTTCAAGAGTCAAGAGATTCAAGCTCATAAAGGATCGATATGGAGTATTAAGTTTAGTTT 1118
||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 1077 TTTCAAGAGCCAAGAGATTCAAGCTCATAAAGGGTCGATATGGAGCATTAAGTTCAGTTT 1136
Query 1119 GGATGGGAGGTATCTTGCTAGTGCTGGTGAGGATTGTGTTATTCAGATTTGGAAGGTTGT 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 GGATGGGAGGTATCTTGCTAGTGCTGGTGAGGATTGTGTTATTCAGATTTGGAAGGTTGT 1196
Query 1179 TGAGTCAGAAAGAAAAGGGGAACTCTTGTCGATGGATAAACAAGAAGATGGAAGTATAAA 1238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TGAGTCAGAAAGAAAAGGGGAACTCTTGTCGATGGATAAACAAGAAGATGGAAGTATAAA 1256
Query 1239 TTTGTTTCTTTTAGCAAATGGAT-CACCCGAACCCGTTTCAATGTCTCCAAAGAGAAGAG 1297
|||||||||||| ||||||| || |||| ||||| |||||||||||||||||||||||||
Sbjct 1257 TTTGTTTCTTTTGGCAAATG-ATTCACCAGAACCAGTTTCAATGTCTCCAAAGAGAAGAG 1315
Query 1298 GAAGAACATCTTTTAGCCGAAAATCAGTGAGCTTGGACAATGTTCTTGTTCCAGAGGCAG 1357
| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 GGAGAACGTCTTTCAGCCGAAAATCAGTGAGCTTGGACAATGTTCTTGTTCCAGAGGCAG 1375
Query 1358 TCTTTGGTCTTTCAGAGAAACCCGTGTGTTCATTTGTAGGGCATTTGGATGACGTACTTG 1417
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1376 TCTTTGGTCTTTCAGAGAAACCCTTGTGTTCATTTGTAGGGCATTTGGATGACGTGCTTG 1435
Query 1418 ATCTTTCGTGGTCAAAATCTCAGCACCTGCTTTCCTCTTCCATGGATAAGACTGTTCGTC 1477
||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1436 ATCTTTCATGGTCAAAATCTCAGCACCTGCTTTCCTCTTCCATGGACAAGACTGTCCGTT 1495
Query 1478 TATGGGACTTATCTAGCAAGACATGTTTGAAAGTCTTCTCACATAGTGACTACGTGACTT 1537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 TATGGGACTTATCTAGCAAGACATGTTTGAAAGTCTTCTCACATAGTGACTACGTGACTT 1555
Query 1538 GCATCCAGTTTAATCCCGTGGATGACAATTACTTCATCAGCGGATCATTGGATGCAAAAG 1597
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 GCATCCAGTTTAATCCGGTGGATGACAATTACTTCATCAGCGGATCATTGGATGCAAAAG 1615
Query 1598 TTCGGATATGGAGTATTCCTGATCATCAAGTTGTTGATTGGAATGATCTTCATGAGATGG 1657
|||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1616 TTCGGATAAGGAGCATTCCTGATCATCAAGTTGTTGACTGGAATGATCTTCATGAGATGG 1675
Query 1658 TCACAGCTGCTTGCTACACACCGGATGGACAGGGTGCATTGGTTGGTTCATACAAAGGAA 1717
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1676 TCACAGCTGCCTGCTACACACCGGATGGACAGGGTGCATTGGATGGTTCATACAAAGGAA 1735
Query 1718 CATGCTGCTTATACAACACACATGATAACAAACTGCAGCAGAGACGCGAAATCAATCTGA 1777
|||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1736 CATGTTGCTTATACAACACACATGATAACAAACTGCAGCAAAGACGTGAAATCAATCTGA 1795
Query 1778 AGAACAGGAAAAAGAAAACCCATCACAAGAAAATCACTGGTTTTCAGTTTGTGGCAGGAA 1837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 AGAACAGGAAAAAGAAAACCCATCACAAGAAAATCACTGGTTTTCAGTTTGTGGCAGGAA 1855
Query 1838 GTTCATCGGAAGTTCTCGTCACATCTGCAGATTCACGTACGCGTGTTGTTGATGGTGTTG 1897
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1856 GTTCATCGGAAGTGCTCGTCACATCTGCAGATTCACGTACGCGTGTTGTTGATGGTGTTG 1915
Query 1898 ACCTTGTTCACAAGTTTAAAGGATTTCGCAACACGAATAGCCAAATCTCGGCTTCACTTA 1957
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 ACCTTGTCCACAAGTTTAAAGGATTTCGCAACACGAATAGCCAAATCTCGGCTTCACTTA 1975
Query 1958 CATCAAACGGGAAATTCCTAGTATCAGCAAGCGAAGACTCTAATGTGTATGTATGGAACT 2017
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1976 CATCAAACGGGAAATTCCTAGTCTCAGCAAGCGAAGACTCTAATGTGTATGTATGGAACT 2035
Query 2018 ACGACTCAGACTCTCGAGCAGGAAGAAGCAAACGTGTCACAGTCACAAACTCATACGAAA 2077
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2036 ACGACTCAGACTCTCGAGCTGGAAGAAGCAAACGTGTCACAGTCACAAACTCATACGAAC 2095
Query 2078 ACTTTTATTGTCGTGACGTCTCTGTGGCTGCACCTTGGCCTGGCAAAATCAGTAACAACC 2137
||||||| ||||| || ||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 2096 ACTTTTACTGTCGAGATGTCTCCGTGGCTGCACCTTGGCCTGGGAAAATGAGTAACAACC 2155
Query 2138 ACA-CTAACAACAGCCCCGAACAGTCATCCTTCACAGCCAATAATAACCCTCCGACACCT 2196
| | | |||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 2156 AAAGC-AACAACAGCCCCCAACAGTCATCCTTCACAGCCAATAATACCCCTCCGACACCT 2214
Query 2197 GTCAACGATCCAACCAACAACAAAACCGTCACCAACGGTATCATTTCAAGCGCCACAAAC 2256
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2215 GTCAATGATCCAACCAACAACAAAACCGTCACCAACGGTATCATTTCAAGCGCCACAAAC 2274
Query 2257 CGATACTTCTTCGATAGAGTCTCAGCAACATGGCCTGAAGAAAAACTCTTGCTGGCTGCA 2316
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 2275 CGATACTTCTTCGATAGAATCTCAGCAACATGGCCTGAAGAAAAACTCTTATTGGCTGCA 2334
Query 2317 AAAAACCGAGCCAGAACAAGCCCTCGTGTGAGCGTGGACATGTCTAACATACAGGTTAAC 2376
|| |||||| || |||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2335 AAGAACCGAACCCGAACTAGCCCTCGTGTGAGCGTCGACATGTCTAACATACAGGTTAAC 2394
Query 2377 ACAAAACCGAGTGCCTCGGCGTGGTCTATGGTGATTGTGACTGGCAGTCTACGAGGCGAA 2436
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 2395 ACAAAACCGAGTGCCTCGGCTTGGTCTATGGTGATTGTGACTGGCAGTTTACGAGGCGAA 2454
Query 2437 ATCAGAATATTTCAGAATTTTGGATTTCCAGTTCGTCTATGATGCAAGGAGAAGGTTTTA 2496
||||||| |||||||||||||||||| ||||||||||||||| |||||||||| ||||||
Sbjct 2455 ATCAGAACATTTCAGAATTTTGGATTACCAGTTCGTCTATGAGGCAAGGAGAAAGTTTTA 2514
Query 2497 CAATATCAAAAT-CCTAAGGCAAAGTGAAA-TTTTCCCTTAGTAAAACCATCTCCTGTCA 2554
||| ||||||| || |||||||||||||| |||| | || |||||||||| ||||||||
Sbjct 2515 CAAAATCAAAAAGCCCAAGGCAAAGTGAAAATTTTGC-TTCGTAAAACCATATCCTGTCA 2573
Query 2555 AAAGTGTATAGATTGAGAGAAGGTTTGGTTCATCCACTGACTT--CTCTCGtttttttt- 2611
||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||
Sbjct 2574 AAAGTGTATAGATTGAGAGAAGGTT-GGTTCGTCCACTGACTTGTCTCTC-TTTTTTTTC 2631
Query 2612 ttttACCACGCTTC-TT-TT--ATTTAT----CTGATTTGTTATCTCTAAAATTCAAATC 2663
|||||||||||||| || || |||||| || |||||||||||||||||||||||||
Sbjct 2632 TTTTACCACGCTTCCTTCTTTTATTTATTTATCTTATTTGTTATCTCTAAAATTCAAATC 2691
Query 2664 TCTAGCAAATATATATAATGTTATTTTT 2691
||||||||||||||||||||||||||||
Sbjct 2692 TCTAGCAAATATATATAATGTTATTTTT 2719
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101624773660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5