BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54210.1
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950054 jgi|Araly1|950054|scaffold_801941.1 1284 0.0
Ahg950058 jgi|Araly1|950058|scaffold_801945.1 688 0.0
> Ahg950054 jgi|Araly1|950054|scaffold_801941.1
Length=961
Score = 1284 bits (695), Expect = 0.0
Identities = 844/916 (92%), Gaps = 10/916 (1%)
Strand=Plus/Plus
Query 1 ATGTCTGTAATGCAACAAAATCTTTCAGTTGAACCAAAATCTAAAAAACGAAAGATCGAT 60
||||||||||||||||||||||||||| | |||||||||||||||| ||||||||| |||
Sbjct 24 ATGTCTGTAATGCAACAAAATCTTTCACTAGAACCAAAATCTAAAAGACGAAAGATTGAT 83
Query 61 TCAGAGATTAATAATTCA---TCTTCTTCTACGAAT---TGTGATCACTTTTTCGTTCGT 114
|||||||||||| |||| ||||||||| | ||| |||| |||||| |||||||||
Sbjct 84 TCAGAGATTAATTCTTCATCTTCTTCTTCTTCTAATAACTGTGGTCACTTCTTCGTTCGT 143
Query 115 TACGGAATCTGTTGTAATTGTAGATCAAACGTAGAGAGACATAGAGGACGATCATTCGAT 174
||||||||||||||| | |||||||| ||||||||||||||| |||||||| ||||||||
Sbjct 144 TACGGAATCTGTTGTCACTGTAGATCGAACGTAGAGAGACATGGAGGACGAGCATTCGAT 203
Query 175 TACCTAGTTGATGGATTACAGTTAAGCGACATAGCAGTCACGGTTACAAAGCGAGTCACA 234
|| ||||||||||||||| ||||||||||| ||||||| | |||||| |||||||| ||
Sbjct 204 TATCTAGTTGATGGATTAGAGTTAAGCGACGTAGCAGTGAAGGTTACTAAGCGAGTTACT 263
Query 235 ACACAAATCACTTGCTTTAACGACAAGAAGCTTCACTTGGTACTTGACTTGGACCACACG 294
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 264 ACACAAATCACTTGCTTCAACGACAAGAAGCTTCACTTGGTACTTGACTTGGATCACACG 323
Query 295 CTTCTTCACACCGTTATGATTTCGAATCTTACTAAAGAAGAGACGTATCTAATCGAAGAA 354
||||| |||||||||||| ||||||||||| |||||||||| ||||||||||| | ||||
Sbjct 324 CTTCTCCACACCGTTATGGTTTCGAATCTTTCTAAAGAAGAAACGTATCTAATTGGAGAA 383
Query 355 GAAGATTCAAGGGAAGATCTACGGAGGTTAAACGGAGGATACTCAAGCGAGTTCTTGATA 414
| ||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||
Sbjct 384 GCAGATTCAAGGGAAGATCTATGGAAGTTTAACGGAGGATACTCAAGCGAGTTCTTGATA 443
Query 415 AAGCTTAGACCTTTTGTTCACGAGTTTCTTAAAGAAGCTAACAAGATGTTTTCCATGTAT 474
||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 444 AAGCTTAGACCTTATGTTCACGAGTTTCTTAAAGAAGCCAACGAGATGTTTTCCATGTAT 503
Query 475 GTTTACACGATGGGAGATCGTGATTACGC-AATGAATGTGTTGAACCTGATTGATCCGGA 533
||||||||||||||||||||||||||||| ||| || |||||||| || |||||||||||
Sbjct 504 GTTTACACGATGGGAGATCGTGATTACGCAAAT-AACGTGTTGAAGCTAATTGATCCGGA 562
Query 534 -AAAAGTATACTTTGGAGATCGAGTGATAACTAGAAACGAGAGTCCTTATATTAAGACGC 592
|||| ||||||||||| ||||||||||||| |||||||||||||||||||| ||||| |
Sbjct 563 GAAAA-TATACTTTGGACATCGAGTGATAACCAGAAACGAGAGTCCTTATATAAAGACAC 621
Query 593 TTGATCTTGTTTTAGCTGATGAGTGTGGTGTTGTGATTGTGGATGATACTCCTCATGTTT 652
||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 622 TTGATCTTGTTTTGGCTGATGAGTGTGGAGTTGTGATTGTGGATGATACTCCTCAAGTTT 681
Query 653 GGCCTGATCACAAGAGGAATTTGCTAGAGATCACCAAATACAATTATTTTAGTGACAAGA 712
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 682 GGCCTGATGACAAGAGGAACCTGCTAGAGATCACCAAATACAATTATTTTAGTGACAAGA 741
Query 713 CAAGACACGATGTGAAGTACACGAAATCTTATGCAGAGGAGAAGAGAGACGAGAGTCGAA 772
|||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 742 CAAGACGCGATGTGAAGTACTCGAAATCTTATGCAGAGGAGAAGAGAGACGAGGGTCGAA 801
Query 773 ACGATGGATCTTTGGCGAATGTTTTGAAAGTTATCAAGCAAGTTTATGAAGGATTCTTCA 832
|||||||||| ||||||||||||||||||||||||||| || |||||||||||||||| |
Sbjct 802 ACGATGGATCGTTGGCGAATGTTTTGAAAGTTATCAAGGAAATTTATGAAGGATTCTTTA 861
Query 833 GTGGAGGAGTTGAGAAAGACTTAGATATTGATTCAAAGGATGTGAGGTTGTTGCTTCATG 892
| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 862 GCGGCGGAGTTGAGAAAGAGTTAGATATTGATTCAAAGGATGTGAGGTTGTTGCTTCATA 921
Query 893 ATGCACGTAGACCAAA 908
||||||||||||||||
Sbjct 922 ATGCACGTAGACCAAA 937
> Ahg950058 jgi|Araly1|950058|scaffold_801945.1
Length=472
Score = 688 bits (372), Expect = 0.0
Identities = 424/450 (94%), Gaps = 0/450 (0%)
Strand=Plus/Plus
Query 461 TGTTTTCCATGTATGTTTACACGATGGGAGATCGTGATTACGCAATGAATGTGTTGAACC 520
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
Sbjct 1 TGTTTTCCATGTATGTTTACACGATGGGAGATCGTGATTACGCAAAGAACGTGTTGAAGC 60
Query 521 TGATTGATCCGGAAAAAGTATACTTTGGAGATCGAGTGATAACTAGAAACGAGAGTCCTT 580
||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 61 TGATTGATCCGGAGAAAGTATACTTTGGGGATCGAGTGATAACCAGAAACGAGAGTCCTT 120
Query 581 ATATTAAGACGCTTGATCTTGTTTTAGCTGATGAGTGTGGTGTTGTGATTGTGGATGATA 640
|||| ||||| |||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 121 ATATAAAGACACTTGATCTTGTTTTGGCAGATGAGTGTGGAGTTGTGATTGTGGATGATA 180
Query 641 CTCCTCATGTTTGGCCTGATCACAAGAGGAATTTGCTAGAGATCACCAAATACAATTATT 700
|| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 CTGCTCAAGTTTGGCCTGATCACAAGAGGAACCTGCTAGAGATCACCAAATACAATTATT 240
Query 701 TTAGTGACAAGACAAGACACGATGTGAAGTACACGAAATCTTATGCAGAGGAGAAGAGAG 760
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 TTAGTGACAAGACAAGACGCGATGTGAAGTACTCGAAATCTTATGCAGAGGAGAAGAGAG 300
Query 761 ACGAGAGTCGAAACGATGGATCTTTGGCGAATGTTTTGAAAGTTATCAAGCAAGTTTATG 820
||||| |||||||||||||||| |||| |||||||||||||||||||||| |||||||||
Sbjct 301 ACGAGGGTCGAAACGATGGATCGTTGGGGAATGTTTTGAAAGTTATCAAGGAAGTTTATG 360
Query 821 AAGGATTCTTCAGTGGAGGAGTTGAGAAAGACTTAGATATTGATTCAAAGGATGTGAGGT 880
|| ||||||| || || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 361 AACGATTCTTTAGCGGCGGAGTTGAGAAAGAGTTAGATATTGATTCAAAGGATGTGAGGT 420
Query 881 TGTTGCTTCATGATGCACGTAGACCAAAGT 910
||||||||||||||||||||||||||||||
Sbjct 421 TGTTGCTTCATGATGCACGTAGACCAAAGT 450
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34158133632
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5