BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G54210.1 Length=921 Score E Sequences producing significant alignments: (Bits) Value Ahg950054 jgi|Araly1|950054|scaffold_801941.1 1284 0.0 Ahg950058 jgi|Araly1|950058|scaffold_801945.1 688 0.0 > Ahg950054 jgi|Araly1|950054|scaffold_801941.1 Length=961 Score = 1284 bits (695), Expect = 0.0 Identities = 844/916 (92%), Gaps = 10/916 (1%) Strand=Plus/Plus Query 1 ATGTCTGTAATGCAACAAAATCTTTCAGTTGAACCAAAATCTAAAAAACGAAAGATCGAT 60 ||||||||||||||||||||||||||| | |||||||||||||||| ||||||||| ||| Sbjct 24 ATGTCTGTAATGCAACAAAATCTTTCACTAGAACCAAAATCTAAAAGACGAAAGATTGAT 83 Query 61 TCAGAGATTAATAATTCA---TCTTCTTCTACGAAT---TGTGATCACTTTTTCGTTCGT 114 |||||||||||| |||| ||||||||| | ||| |||| |||||| ||||||||| Sbjct 84 TCAGAGATTAATTCTTCATCTTCTTCTTCTTCTAATAACTGTGGTCACTTCTTCGTTCGT 143 Query 115 TACGGAATCTGTTGTAATTGTAGATCAAACGTAGAGAGACATAGAGGACGATCATTCGAT 174 ||||||||||||||| | |||||||| ||||||||||||||| |||||||| |||||||| Sbjct 144 TACGGAATCTGTTGTCACTGTAGATCGAACGTAGAGAGACATGGAGGACGAGCATTCGAT 203 Query 175 TACCTAGTTGATGGATTACAGTTAAGCGACATAGCAGTCACGGTTACAAAGCGAGTCACA 234 || ||||||||||||||| ||||||||||| ||||||| | |||||| |||||||| || Sbjct 204 TATCTAGTTGATGGATTAGAGTTAAGCGACGTAGCAGTGAAGGTTACTAAGCGAGTTACT 263 Query 235 ACACAAATCACTTGCTTTAACGACAAGAAGCTTCACTTGGTACTTGACTTGGACCACACG 294 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 264 ACACAAATCACTTGCTTCAACGACAAGAAGCTTCACTTGGTACTTGACTTGGATCACACG 323 Query 295 CTTCTTCACACCGTTATGATTTCGAATCTTACTAAAGAAGAGACGTATCTAATCGAAGAA 354 ||||| |||||||||||| ||||||||||| |||||||||| ||||||||||| | |||| Sbjct 324 CTTCTCCACACCGTTATGGTTTCGAATCTTTCTAAAGAAGAAACGTATCTAATTGGAGAA 383 Query 355 GAAGATTCAAGGGAAGATCTACGGAGGTTAAACGGAGGATACTCAAGCGAGTTCTTGATA 414 | ||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||| Sbjct 384 GCAGATTCAAGGGAAGATCTATGGAAGTTTAACGGAGGATACTCAAGCGAGTTCTTGATA 443 Query 415 AAGCTTAGACCTTTTGTTCACGAGTTTCTTAAAGAAGCTAACAAGATGTTTTCCATGTAT 474 ||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 444 AAGCTTAGACCTTATGTTCACGAGTTTCTTAAAGAAGCCAACGAGATGTTTTCCATGTAT 503 Query 475 GTTTACACGATGGGAGATCGTGATTACGC-AATGAATGTGTTGAACCTGATTGATCCGGA 533 ||||||||||||||||||||||||||||| ||| || |||||||| || ||||||||||| Sbjct 504 GTTTACACGATGGGAGATCGTGATTACGCAAAT-AACGTGTTGAAGCTAATTGATCCGGA 562 Query 534 -AAAAGTATACTTTGGAGATCGAGTGATAACTAGAAACGAGAGTCCTTATATTAAGACGC 592 |||| ||||||||||| ||||||||||||| |||||||||||||||||||| ||||| | Sbjct 563 GAAAA-TATACTTTGGACATCGAGTGATAACCAGAAACGAGAGTCCTTATATAAAGACAC 621 Query 593 TTGATCTTGTTTTAGCTGATGAGTGTGGTGTTGTGATTGTGGATGATACTCCTCATGTTT 652 ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 622 TTGATCTTGTTTTGGCTGATGAGTGTGGAGTTGTGATTGTGGATGATACTCCTCAAGTTT 681 Query 653 GGCCTGATCACAAGAGGAATTTGCTAGAGATCACCAAATACAATTATTTTAGTGACAAGA 712 |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 682 GGCCTGATGACAAGAGGAACCTGCTAGAGATCACCAAATACAATTATTTTAGTGACAAGA 741 Query 713 CAAGACACGATGTGAAGTACACGAAATCTTATGCAGAGGAGAAGAGAGACGAGAGTCGAA 772 |||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 742 CAAGACGCGATGTGAAGTACTCGAAATCTTATGCAGAGGAGAAGAGAGACGAGGGTCGAA 801 Query 773 ACGATGGATCTTTGGCGAATGTTTTGAAAGTTATCAAGCAAGTTTATGAAGGATTCTTCA 832 |||||||||| ||||||||||||||||||||||||||| || |||||||||||||||| | Sbjct 802 ACGATGGATCGTTGGCGAATGTTTTGAAAGTTATCAAGGAAATTTATGAAGGATTCTTTA 861 Query 833 GTGGAGGAGTTGAGAAAGACTTAGATATTGATTCAAAGGATGTGAGGTTGTTGCTTCATG 892 | || |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 862 GCGGCGGAGTTGAGAAAGAGTTAGATATTGATTCAAAGGATGTGAGGTTGTTGCTTCATA 921 Query 893 ATGCACGTAGACCAAA 908 |||||||||||||||| Sbjct 922 ATGCACGTAGACCAAA 937 > Ahg950058 jgi|Araly1|950058|scaffold_801945.1 Length=472 Score = 688 bits (372), Expect = 0.0 Identities = 424/450 (94%), Gaps = 0/450 (0%) Strand=Plus/Plus Query 461 TGTTTTCCATGTATGTTTACACGATGGGAGATCGTGATTACGCAATGAATGTGTTGAACC 520 ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| | Sbjct 1 TGTTTTCCATGTATGTTTACACGATGGGAGATCGTGATTACGCAAAGAACGTGTTGAAGC 60 Query 521 TGATTGATCCGGAAAAAGTATACTTTGGAGATCGAGTGATAACTAGAAACGAGAGTCCTT 580 ||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 61 TGATTGATCCGGAGAAAGTATACTTTGGGGATCGAGTGATAACCAGAAACGAGAGTCCTT 120 Query 581 ATATTAAGACGCTTGATCTTGTTTTAGCTGATGAGTGTGGTGTTGTGATTGTGGATGATA 640 |||| ||||| |||||||||||||| || ||||||||||| ||||||||||||||||||| Sbjct 121 ATATAAAGACACTTGATCTTGTTTTGGCAGATGAGTGTGGAGTTGTGATTGTGGATGATA 180 Query 641 CTCCTCATGTTTGGCCTGATCACAAGAGGAATTTGCTAGAGATCACCAAATACAATTATT 700 || |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 181 CTGCTCAAGTTTGGCCTGATCACAAGAGGAACCTGCTAGAGATCACCAAATACAATTATT 240 Query 701 TTAGTGACAAGACAAGACACGATGTGAAGTACACGAAATCTTATGCAGAGGAGAAGAGAG 760 |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| Sbjct 241 TTAGTGACAAGACAAGACGCGATGTGAAGTACTCGAAATCTTATGCAGAGGAGAAGAGAG 300 Query 761 ACGAGAGTCGAAACGATGGATCTTTGGCGAATGTTTTGAAAGTTATCAAGCAAGTTTATG 820 ||||| |||||||||||||||| |||| |||||||||||||||||||||| ||||||||| Sbjct 301 ACGAGGGTCGAAACGATGGATCGTTGGGGAATGTTTTGAAAGTTATCAAGGAAGTTTATG 360 Query 821 AAGGATTCTTCAGTGGAGGAGTTGAGAAAGACTTAGATATTGATTCAAAGGATGTGAGGT 880 || ||||||| || || |||||||||||||| |||||||||||||||||||||||||||| Sbjct 361 AACGATTCTTTAGCGGCGGAGTTGAGAAAGAGTTAGATATTGATTCAAAGGATGTGAGGT 420 Query 881 TGTTGCTTCATGATGCACGTAGACCAAAGT 910 |||||||||||||||||||||||||||||| Sbjct 421 TGTTGCTTCATGATGCACGTAGACCAAAGT 450 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34158133632 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5