BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54215.1
Length=252
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917103 jgi|Araly1|917103|Al_scaffold_0008_1854 394 2e-109
Ahg950059 jgi|Araly1|950059|scaffold_801946.1 377 2e-104
> Ahg917103 jgi|Araly1|917103|Al_scaffold_0008_1854
Length=252
Score = 394 bits (213), Expect = 2e-109
Identities = 240/253 (95%), Gaps = 2/253 (1%)
Strand=Plus/Plus
Query 1 ATGGGTTCCTCCAGATTGATGATTACATTCATTGTTGTTGCTATGCTGGCCATTTCCTCT 60
|||||||| |||| ||||||| |||||||||| |||||||||||||| ||||||||||||
Sbjct 1 ATGGGTTCTTCCAAATTGATGTTTACATTCATCGTTGTTGCTATGCTAGCCATTTCCTCT 60
Query 61 GACCTTTTCTCTGTTCAAA-TAGGAATCAGCGTGCAAGCTGCGCCTCCCACTTGTGGACG 119
||||| ||||||||| ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 61 GACCTATTCTCTGTTGAAACT-GGAATCAGCGTGCAAGCTGCGCCTCCCACTTGTGGACG 119
Query 120 AGACTGTACTGAGAAATTCTTGACACAAGACTGCGATAAATATTGTGTAGGTTTGTCTTA 179
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGATTGTACTGAGAAATTCTTGACACAAGACTGCGATAAATATTGTGTAGGTTTGTCTTA 179
Query 180 TAAAAAAGGTGTTTGCATTCTATCCGAAGGACTTCCTCCGAAAACTTCTACATATCGTTG 239
||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 TAAAAGAGGTGTTTGCATACTATCCGAAGGACTTCCTCCAAAAACTTCTACATATCGTTG 239
Query 240 TTGTTGTTCGTAA 252
|||||||||||||
Sbjct 240 TTGTTGTTCGTAA 252
> Ahg950059 jgi|Araly1|950059|scaffold_801946.1
Length=293
Score = 377 bits (204), Expect = 2e-104
Identities = 237/253 (94%), Gaps = 2/253 (1%)
Strand=Plus/Plus
Query 1 ATGGGTTCCTCCAGATTGATGATTACATTCATTGTTGTTGCTATGCTGGCCATTTCCTCT 60
||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 21 ATGGGTTCCTCCAAATTGATGATTACATTCATCGTTGTTGCTATGCTGGCTATTTCTTCT 80
Query 61 GACCT-TTTCTCTGTTCAAATAGGAATCAGCGTGCAAGCTGCGCCTCCCACTTGTGGACG 119
||||| ||| |||||| ||| | ||||||| | ||||||| |||||||||||||||||||
Sbjct 81 GACCTATTT-TCTGTTGAAACAAGAATCAGAGCGCAAGCTTCGCCTCCCACTTGTGGACG 139
Query 120 AGACTGTACTGAGAAATTCTTGACACAAGACTGCGATAAATATTGTGTAGGTTTGTCTTA 179
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 AGATTGTACTGAGAAATTCTTGACACAAGACTGCGATAAATATTGTGTAGGTTTGTCTTA 199
Query 180 TAAAAAAGGTGTTTGCATTCTATCCGAAGGACTTCCTCCGAAAACTTCTACATATCGTTG 239
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 200 TAGAAAAGGTGTTTGCATTCTATCCGAAGGACTTCCCCCGAAAACTTCTACATATCGTTT 259
Query 240 TTGTTGTTCGTAA 252
|||||||||||||
Sbjct 260 TTGTTGTTCGTAA 272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8745111769
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5