BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54220.1
Length=332
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950057 jgi|Araly1|950057|scaffold_801944.1 484 1e-136
Ahg950060 jgi|Araly1|950060|scaffold_801947.1 433 4e-121
> Ahg950057 jgi|Araly1|950057|scaffold_801944.1
Length=331
Score = 484 bits (262), Expect = 1e-136
Identities = 283/293 (97%), Gaps = 2/293 (1%)
Strand=Plus/Plus
Query 1 ATGGGTTCTTCTAAATTGTTGGTTGCATTCACTCTCATCGTCATGATGACCATTTCCTAT 60
|||||||||| ||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 21 ATGGGTTCTTTTAAATTGTTGGTTGCATTCACTCTCGTTGTTATGATGACCATTTCCTAT 80
Query 61 GACCTCTTCACCGGAATAGGAAT-AGATGCGAGAACTGTGCCTCCGACATGCTATGAAAG 119
||||||||| | ||||||||||| || |||||||||||||||||| ||||||||||||||
Sbjct 81 GACCTCTTCTCTGGAATAGGAATAAG-TGCGAGAACTGTGCCTCCAACATGCTATGAAAG 139
Query 120 TTGTAACGCGACATTTCAAAATCCAGAATGTAACAAAATGTGTGTAGGATTGGCTTATAA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 TTGTAACGCGACATTTCAAAATCCAGAATGTAACAAAATGTGTGTAGGATTGGCTTATAA 199
Query 180 AGATGGTAGCTGCATTTATCCTCCTCCTGAGGTTGATGGTCTTCCTCCTAAACGACCTTA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 AGATGGTAGCTGCATTTATCCTCCTCCTGAGGTTGATGGTCTTCCTCCTAAACGACCTTA 259
Query 240 CTTTCCTCGTTGTTGTTGTAATCCTATAATTCTTTCACCTCCTTCTCCTTGAT 292
|||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 260 CTTTCCTCGTTGTTGTTGTAATCCTATAATTCTTTCTCCTCCTTCTCCTTGAT 312
> Ahg950060 jgi|Araly1|950060|scaffold_801947.1
Length=334
Score = 433 bits (234), Expect = 4e-121
Identities = 287/312 (92%), Gaps = 6/312 (2%)
Strand=Plus/Plus
Query 1 ATGGGTTCTTCTAAATTGTTGGTTGCATTCACTCTCATCGTCATGATGACCATTTCCTAT 60
|||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||
Sbjct 21 ATGGGTTCTTCTAAATTGTTGGTTGCATTCACTCTCGTCCTTATGATGACCATTTCCTAT 80
Query 61 GACCTCTTCACCGGAATAGGAATAGATGCGAGAACTGTGCCTCCGACATGC--T-ATGAA 117
||||| ||| | |||||||||||| |||||||||||||| ||||||||||| | |||||
Sbjct 81 GACCTTTTCTCTGGAATAGGAATAAATGCGAGAACTGTGTCTCCGACATGCTTTGATGAA 140
Query 118 AGTTGTAACGCGACATTTCAAAATCCAGAATGTAACAAAATGTGTGTAGGATTGGCTTAT 177
|||||||| ||||||||||||||||||||||||||||||| ||||||| ||| ||||||
Sbjct 141 AGTTGTAATGCGACATTTCAAAATCCAGAATGTAACAAAAAGTGTGTATTATTTGCTTAT 200
Query 178 AAAGATGGTAGCTGCATTTATCCTCCTCCTGAGG-TTGATGGTCTTCCTCCTAAACGACC 236
|||||||||||||||||||||||||||||| ||| || ||| ||||||||| ||||||||
Sbjct 201 AAAGATGGTAGCTGCATTTATCCTCCTCCTAAGGCTT-ATGTTCTTCCTCCCAAACGACC 259
Query 237 TTACTTTCCTCGTTGTTGTTGTAATCCTATAATTCTTTCACCTCCTTCTCCTTGATCAAT 296
|||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 260 TTACTTTCGTCGTTGTTGTTGTAATCCTTTAATTCTTTCACCTCTTTCTCCTTGATCAAT 319
Query 297 ATATT-CCTTTT 307
||||| ||||||
Sbjct 320 ATATTTCCTTTT 331
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11751921412
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5