BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54225.1
Length=249
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331769 jgi|Araly1|331769|fgenesh1_pm.C_scaffold_8001112 355 7e-98
> Ahg331769 jgi|Araly1|331769|fgenesh1_pm.C_scaffold_8001112
Length=249
Score = 355 bits (192), Expect = 7e-98
Identities = 233/252 (92%), Gaps = 6/252 (2%)
Strand=Plus/Plus
Query 1 ATGAAGATGGAATCCTCAAAAATGTTGGTTGTATTCACCCTCATGGTTCTCATCGCAGTC 60
|||||||||||||||| ||||| ||||||||||||||||||||| |||||||||| ||||
Sbjct 1 ATGAAGATGGAATCCTTAAAAAAGTTGGTTGTATTCACCCTCATCGTTCTCATCGGAGTC 60
Query 61 TCCTCCGATCTA-GTCTCCGGTAATTTTGCATCCGG-GGAGGCTTC-GAGTCAACTGTGC 117
|||||||||| | |||||||||||| ||||| |||| ||||||||| || | ||||||||
Sbjct 61 TCCTCCGATC-ACGTCTCCGGTAATCTTGCA-CCGGAGGAGGCTTCGGA-TGAACTGTGC 117
Query 118 TTCAATCCTTGCACTCCTCAACTTGGCAATAACGAGTGCAATACGATTTGTATGAACAAG 177
|||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||
Sbjct 118 TTCAATCCTTGCACTCCTAAACTTGGCAACAACGAGTGCAATACGATTTGTGTGAACAAG 177
Query 178 AAATACAAAGAAGGTTCTTGTGTTGGTTTTGGAATTCCCCCTACTTCCAAATATTGTTGC 237
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 178 AAATACAAAGAGGGTTCTTGTGTTGGTTTTGGAATTCCCCCTACTTTCAAATATTGTTGT 237
Query 238 TGTAAAACTTAA 249
||||||| ||||
Sbjct 238 TGTAAAAATTAA 249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8630546986
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5