BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G54230.1 Length=1155 Score E Sequences producing significant alignments: (Bits) Value Ahg357679 jgi|Araly1|357679|fgenesh1_pg.C_scaffold_8001466 1509 0.0 Ahg331771 jgi|Araly1|331771|fgenesh1_pm.C_scaffold_8001114 1509 0.0 Ahg489795 jgi|Araly1|489795|fgenesh2_kg.6__2929__AT4G09460.1 99.0 7e-20 Ahg484718 jgi|Araly1|484718|fgenesh2_kg.5__710__AT3G30210.1 89.8 4e-17 > Ahg357679 jgi|Araly1|357679|fgenesh1_pg.C_scaffold_8001466 Length=963 Score = 1509 bits (817), Expect = 0.0 Identities = 917/965 (95%), Gaps = 7/965 (1%) Strand=Plus/Plus Query 89 ATGGGAAAATCTTCAAGCTCGGAGGAAAGTGAAGTGAAGAAAGGGCCATGGACTCCGGAG 148 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGGAAAATCCTCAAGTTCGGAGGAAAGTGAAGTGAAGAAAGGGCCATGGACTCCGGAG 60 Query 149 GAAGACGAGAAGCTCGTAGGCTATATTCAAACGCACGGTCCCGGCAAATGGCGTACCCTT 208 ||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||| Sbjct 61 GAAGACGAGAAGCTCGTCGGCTATATTCAAACGCACGGTCCCGGAAAATGGCGAACCCTT 120 Query 209 CCCAAGAACGCCGGGTTAAAAAGATGCGGGAAGAGTTGTAGATTGCGATGGACGAATTAT 268 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 121 CCCAAGAACGCCGGGTTAAAAAGGTGCGGAAAGAGTTGTAGATTGCGATGGACGAATTAT 180 Query 269 CTAAGACCCGATATCAAGAGAGGAGAGTTCTCTCTTCAAGAGGAAGAAACCATCATTCAA 328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CTAAGACCCGATATCAAGAGAGGAGAGTTCTCTCTTCAAGAGGAAGAAACCATCATTCAA 240 Query 329 CTTCATCGTCTTCTTGGAAACAAATGGTCCGCAATTGCTATTCACTTACCAGGAAGAACA 388 |||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||| Sbjct 241 CTTCATCGTCTTCTTGGAAACAAATGGTCCGCAATTGCCATTCACTTGCCGGGAAGAACA 300 Query 389 GATAATGAAATCAAAAACTATTGGAACACACATATTAAAAAGAAACTCTTACGAATGGGG 448 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 301 GATAATGAAATCAAAAACTATTGGAACACTCATATAAAAAAGAAACTCTTACGAATGGGG 360 Query 449 ATTGATCCGGTGACTCATTGTCCCCGCATTAATCTTCTCCAGCTCTCTTCGTTTCTTACC 508 |||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||| Sbjct 361 ATTGATCCGGTGACTCATTGTCCCCGAATCAATCTTCTCCAGCTCTCTTCGTTTCTCACC 420 Query 509 TCATCATTGTTTAAATCTATGTCACAACCGATGAATACTCCATTTGATCTCACTACTTCA 568 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TCATCATTGTTTAAATCTATGTCACAACCGATGAATACTCCATTTGATCTCACTACTTCA 480 Query 569 AATATTAATCCTGATATCTTGAATCATCTCACTGCCTCTCTCAACAACGTTCAGACCGAA 628 | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 481 AGTATTAATCCTGATATCTTGAATCACCTCACTGCCTCTCTCAACAACGTTCAGACCGAA 540 Query 629 TCATACCAACCAAACCAACAGCTTCAAAACGACCTAAACACTGACCAAACCACTTTCACC 688 |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct 541 TCATACCAACCAAACCAACAGCTTCAAAACGACCTAAACAATGATCAAACCACTTTCACC 600 Query 689 GGTTTGCTCAACTCA--A-CACCACCCGTTCAATGGCAAAACAATGGAGAATACTTGGGA 745 ||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||| Sbjct 601 GGTTTGCTCAACTCATCAACACCACCGGTTCAATGGCAAAACAATGGAGAATACTTGGGA 660 Query 746 GATTATCACAGTTATACCGGTACAGGTGATCCATCTAAT-AACAAAGTCCCTCAAGCCGG 804 ||||||| |||||||| |||| ||||||||||||||| | ||| ||||||||||| |||| Sbjct 661 GATTATCTCAGTTATAACGGTTCAGGTGATCCATCTA-TGAACCAAGTCCCTCAAACCGG 719 Query 805 AAACTACTCATCAGCCGCATTTGTATCCGACCACATTAATGATGGTGAGAATTTTAAGGC 864 |||||||||||| ||||||||||||||||| || ||||| || ||||| ||||||||||| Sbjct 720 AAACTACTCATCGGCCGCATTTGTATCCGATCAAATTAACGACGGTGAAAATTTTAAGGC 779 Query 865 CGGATGGAATTTCAGTTCATCAATGCTAGCG-GGAACTTCATCGAGCAGCTCGACACCGT 923 ||||||||||||||| |||||||||||| | |||||||| || |||||||||||||||| Sbjct 780 CGGATGGAATTTCAGCTCATCAATGCTA-CATGGAACTTCGTCAAGCAGCTCGACACCGT 838 Query 924 TGAATTCGTCTTCGACTTTTTATGTCAATGGTGGAAGCGAAGATGATAGAGAGAGTTTTG 983 || |||||||||| | ||||||||||||||||||||||||||||||||||||||||| | Sbjct 839 TGGATTCGTCTTCCAATTTTTATGTCAATGGTGGAAGCGAAGATGATAGAGAGAGTTACG 898 Query 984 GTAGCGACATGTTGATGTTTCATCATCATCATGATCATAATAATAATGCTTTGAATCTAT 1043 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 899 GTAGCGACATGTTGATGTTTCATCATCATCATGATCAGAATAATAATGCTTTGAATCTAT 958 Query 1044 CATAA 1048 ||||| Sbjct 959 CATAA 963 > Ahg331771 jgi|Araly1|331771|fgenesh1_pm.C_scaffold_8001114 Length=963 Score = 1509 bits (817), Expect = 0.0 Identities = 917/965 (95%), Gaps = 7/965 (1%) Strand=Plus/Plus Query 89 ATGGGAAAATCTTCAAGCTCGGAGGAAAGTGAAGTGAAGAAAGGGCCATGGACTCCGGAG 148 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGGAAAATCCTCAAGTTCGGAGGAAAGTGAAGTGAAGAAAGGGCCATGGACTCCGGAG 60 Query 149 GAAGACGAGAAGCTCGTAGGCTATATTCAAACGCACGGTCCCGGCAAATGGCGTACCCTT 208 ||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||| Sbjct 61 GAAGACGAGAAGCTCGTCGGCTATATTCAAACGCACGGTCCCGGAAAATGGCGAACCCTT 120 Query 209 CCCAAGAACGCCGGGTTAAAAAGATGCGGGAAGAGTTGTAGATTGCGATGGACGAATTAT 268 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 121 CCCAAGAACGCCGGGTTAAAAAGGTGCGGAAAGAGTTGTAGATTGCGATGGACGAATTAT 180 Query 269 CTAAGACCCGATATCAAGAGAGGAGAGTTCTCTCTTCAAGAGGAAGAAACCATCATTCAA 328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CTAAGACCCGATATCAAGAGAGGAGAGTTCTCTCTTCAAGAGGAAGAAACCATCATTCAA 240 Query 329 CTTCATCGTCTTCTTGGAAACAAATGGTCCGCAATTGCTATTCACTTACCAGGAAGAACA 388 |||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||| Sbjct 241 CTTCATCGTCTTCTTGGAAACAAATGGTCCGCAATTGCCATTCACTTGCCGGGAAGAACA 300 Query 389 GATAATGAAATCAAAAACTATTGGAACACACATATTAAAAAGAAACTCTTACGAATGGGG 448 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 301 GATAATGAAATCAAAAACTATTGGAACACTCATATAAAAAAGAAACTCTTACGAATGGGG 360 Query 449 ATTGATCCGGTGACTCATTGTCCCCGCATTAATCTTCTCCAGCTCTCTTCGTTTCTTACC 508 |||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||| Sbjct 361 ATTGATCCGGTGACTCATTGTCCCCGAATCAATCTTCTCCAGCTCTCTTCGTTTCTCACC 420 Query 509 TCATCATTGTTTAAATCTATGTCACAACCGATGAATACTCCATTTGATCTCACTACTTCA 568 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TCATCATTGTTTAAATCTATGTCACAACCGATGAATACTCCATTTGATCTCACTACTTCA 480 Query 569 AATATTAATCCTGATATCTTGAATCATCTCACTGCCTCTCTCAACAACGTTCAGACCGAA 628 | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 481 AGTATTAATCCTGATATCTTGAATCACCTCACTGCCTCTCTCAACAACGTTCAGACCGAA 540 Query 629 TCATACCAACCAAACCAACAGCTTCAAAACGACCTAAACACTGACCAAACCACTTTCACC 688 |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct 541 TCATACCAACCAAACCAACAGCTTCAAAACGACCTAAACAATGATCAAACCACTTTCACC 600 Query 689 GGTTTGCTCAACTCA--A-CACCACCCGTTCAATGGCAAAACAATGGAGAATACTTGGGA 745 ||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||| Sbjct 601 GGTTTGCTCAACTCATCAACACCACCGGTTCAATGGCAAAACAATGGAGAATACTTGGGA 660 Query 746 GATTATCACAGTTATACCGGTACAGGTGATCCATCTAAT-AACAAAGTCCCTCAAGCCGG 804 ||||||| |||||||| |||| ||||||||||||||| | ||| ||||||||||| |||| Sbjct 661 GATTATCTCAGTTATAACGGTTCAGGTGATCCATCTA-TGAACCAAGTCCCTCAAACCGG 719 Query 805 AAACTACTCATCAGCCGCATTTGTATCCGACCACATTAATGATGGTGAGAATTTTAAGGC 864 |||||||||||| ||||||||||||||||| || ||||| || ||||| ||||||||||| Sbjct 720 AAACTACTCATCGGCCGCATTTGTATCCGATCAAATTAACGACGGTGAAAATTTTAAGGC 779 Query 865 CGGATGGAATTTCAGTTCATCAATGCTAGCG-GGAACTTCATCGAGCAGCTCGACACCGT 923 ||||||||||||||| |||||||||||| | |||||||| || |||||||||||||||| Sbjct 780 CGGATGGAATTTCAGCTCATCAATGCTA-CATGGAACTTCGTCAAGCAGCTCGACACCGT 838 Query 924 TGAATTCGTCTTCGACTTTTTATGTCAATGGTGGAAGCGAAGATGATAGAGAGAGTTTTG 983 || |||||||||| | ||||||||||||||||||||||||||||||||||||||||| | Sbjct 839 TGGATTCGTCTTCCAATTTTTATGTCAATGGTGGAAGCGAAGATGATAGAGAGAGTTACG 898 Query 984 GTAGCGACATGTTGATGTTTCATCATCATCATGATCATAATAATAATGCTTTGAATCTAT 1043 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 899 GTAGCGACATGTTGATGTTTCATCATCATCATGATCAGAATAATAATGCTTTGAATCTAT 958 Query 1044 CATAA 1048 ||||| Sbjct 959 CATAA 963 > Ahg489795 jgi|Araly1|489795|fgenesh2_kg.6__2929__AT4G09460.1 Length=850 Score = 99.0 bits (53), Expect = 7e-20 Identities = 76/86 (88%), Gaps = 6/86 (7%) Strand=Plus/Plus Query 374 TTACCAGGAAGAACAGATAATGAAATCAAAAACTATTGGAACACACATATTAAAAAGAAA 433 ||||||||||||||||||||||||||||| || ||||||||||| |||||||||| |||| Sbjct 332 TTACCAGGAAGAACAGATAATGAAATCAAGAATTATTGGAACACTCATATTAAAA-GAAA 390 Query 434 -CT-CTTACGA-ATGGGGATTGATCC 456 || |||| | ||||| |||||||| Sbjct 391 GCTTCTTA-GTCATGGG-ATTGATCC 414 > Ahg484718 jgi|Araly1|484718|fgenesh2_kg.5__710__AT3G30210.1 Length=1184 Score = 89.8 bits (48), Expect = 4e-17 Identities = 112/142 (79%), Gaps = 8/142 (6%) Strand=Plus/Plus Query 284 AAGAGAGGAGAGTTCTCTCTTCAAGAGGAAGAAACCATCATTCAACTTCA-TCGTCTTCT 342 ||||||||| | || ||| |||||| |||| || |||| || ||||||| || ||| | Sbjct 442 AAGAGAGGACAAATCACTCCTCAAGAAGAAGGAATCATCCTTGAACTTCATTC-CCTT-T 499 Query 343 -TGGAAACAAATGGTCCGCAATTGCTA-TTCACTTACCAGGAAGAACAGATAATGAAATC 400 || ||||| ||||| |||| || | | | |||||||| ||||||||||||||||| Sbjct 500 GGGGTAACAAGTGGTCTACAATCGCAAGAT-ATTTACCAGGTCGAACAGATAATGAAATC 558 Query 401 AAAAACTATTGGA-ACACACAT 421 ||||||||||||| | |||||| Sbjct 559 AAAAACTATTGGAGA-ACACAT 579 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43078896210 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5