BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54230.1
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
Ahg357679 jgi|Araly1|357679|fgenesh1_pg.C_scaffold_8001466 1509 0.0
Ahg331771 jgi|Araly1|331771|fgenesh1_pm.C_scaffold_8001114 1509 0.0
Ahg489795 jgi|Araly1|489795|fgenesh2_kg.6__2929__AT4G09460.1 99.0 7e-20
Ahg484718 jgi|Araly1|484718|fgenesh2_kg.5__710__AT3G30210.1 89.8 4e-17
> Ahg357679 jgi|Araly1|357679|fgenesh1_pg.C_scaffold_8001466
Length=963
Score = 1509 bits (817), Expect = 0.0
Identities = 917/965 (95%), Gaps = 7/965 (1%)
Strand=Plus/Plus
Query 89 ATGGGAAAATCTTCAAGCTCGGAGGAAAGTGAAGTGAAGAAAGGGCCATGGACTCCGGAG 148
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAAATCCTCAAGTTCGGAGGAAAGTGAAGTGAAGAAAGGGCCATGGACTCCGGAG 60
Query 149 GAAGACGAGAAGCTCGTAGGCTATATTCAAACGCACGGTCCCGGCAAATGGCGTACCCTT 208
||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 61 GAAGACGAGAAGCTCGTCGGCTATATTCAAACGCACGGTCCCGGAAAATGGCGAACCCTT 120
Query 209 CCCAAGAACGCCGGGTTAAAAAGATGCGGGAAGAGTTGTAGATTGCGATGGACGAATTAT 268
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 121 CCCAAGAACGCCGGGTTAAAAAGGTGCGGAAAGAGTTGTAGATTGCGATGGACGAATTAT 180
Query 269 CTAAGACCCGATATCAAGAGAGGAGAGTTCTCTCTTCAAGAGGAAGAAACCATCATTCAA 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTAAGACCCGATATCAAGAGAGGAGAGTTCTCTCTTCAAGAGGAAGAAACCATCATTCAA 240
Query 329 CTTCATCGTCTTCTTGGAAACAAATGGTCCGCAATTGCTATTCACTTACCAGGAAGAACA 388
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 241 CTTCATCGTCTTCTTGGAAACAAATGGTCCGCAATTGCCATTCACTTGCCGGGAAGAACA 300
Query 389 GATAATGAAATCAAAAACTATTGGAACACACATATTAAAAAGAAACTCTTACGAATGGGG 448
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 301 GATAATGAAATCAAAAACTATTGGAACACTCATATAAAAAAGAAACTCTTACGAATGGGG 360
Query 449 ATTGATCCGGTGACTCATTGTCCCCGCATTAATCTTCTCCAGCTCTCTTCGTTTCTTACC 508
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 361 ATTGATCCGGTGACTCATTGTCCCCGAATCAATCTTCTCCAGCTCTCTTCGTTTCTCACC 420
Query 509 TCATCATTGTTTAAATCTATGTCACAACCGATGAATACTCCATTTGATCTCACTACTTCA 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCATCATTGTTTAAATCTATGTCACAACCGATGAATACTCCATTTGATCTCACTACTTCA 480
Query 569 AATATTAATCCTGATATCTTGAATCATCTCACTGCCTCTCTCAACAACGTTCAGACCGAA 628
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 AGTATTAATCCTGATATCTTGAATCACCTCACTGCCTCTCTCAACAACGTTCAGACCGAA 540
Query 629 TCATACCAACCAAACCAACAGCTTCAAAACGACCTAAACACTGACCAAACCACTTTCACC 688
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 541 TCATACCAACCAAACCAACAGCTTCAAAACGACCTAAACAATGATCAAACCACTTTCACC 600
Query 689 GGTTTGCTCAACTCA--A-CACCACCCGTTCAATGGCAAAACAATGGAGAATACTTGGGA 745
||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||
Sbjct 601 GGTTTGCTCAACTCATCAACACCACCGGTTCAATGGCAAAACAATGGAGAATACTTGGGA 660
Query 746 GATTATCACAGTTATACCGGTACAGGTGATCCATCTAAT-AACAAAGTCCCTCAAGCCGG 804
||||||| |||||||| |||| ||||||||||||||| | ||| ||||||||||| ||||
Sbjct 661 GATTATCTCAGTTATAACGGTTCAGGTGATCCATCTA-TGAACCAAGTCCCTCAAACCGG 719
Query 805 AAACTACTCATCAGCCGCATTTGTATCCGACCACATTAATGATGGTGAGAATTTTAAGGC 864
|||||||||||| ||||||||||||||||| || ||||| || ||||| |||||||||||
Sbjct 720 AAACTACTCATCGGCCGCATTTGTATCCGATCAAATTAACGACGGTGAAAATTTTAAGGC 779
Query 865 CGGATGGAATTTCAGTTCATCAATGCTAGCG-GGAACTTCATCGAGCAGCTCGACACCGT 923
||||||||||||||| |||||||||||| | |||||||| || ||||||||||||||||
Sbjct 780 CGGATGGAATTTCAGCTCATCAATGCTA-CATGGAACTTCGTCAAGCAGCTCGACACCGT 838
Query 924 TGAATTCGTCTTCGACTTTTTATGTCAATGGTGGAAGCGAAGATGATAGAGAGAGTTTTG 983
|| |||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 839 TGGATTCGTCTTCCAATTTTTATGTCAATGGTGGAAGCGAAGATGATAGAGAGAGTTACG 898
Query 984 GTAGCGACATGTTGATGTTTCATCATCATCATGATCATAATAATAATGCTTTGAATCTAT 1043
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 899 GTAGCGACATGTTGATGTTTCATCATCATCATGATCAGAATAATAATGCTTTGAATCTAT 958
Query 1044 CATAA 1048
|||||
Sbjct 959 CATAA 963
> Ahg331771 jgi|Araly1|331771|fgenesh1_pm.C_scaffold_8001114
Length=963
Score = 1509 bits (817), Expect = 0.0
Identities = 917/965 (95%), Gaps = 7/965 (1%)
Strand=Plus/Plus
Query 89 ATGGGAAAATCTTCAAGCTCGGAGGAAAGTGAAGTGAAGAAAGGGCCATGGACTCCGGAG 148
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAAATCCTCAAGTTCGGAGGAAAGTGAAGTGAAGAAAGGGCCATGGACTCCGGAG 60
Query 149 GAAGACGAGAAGCTCGTAGGCTATATTCAAACGCACGGTCCCGGCAAATGGCGTACCCTT 208
||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 61 GAAGACGAGAAGCTCGTCGGCTATATTCAAACGCACGGTCCCGGAAAATGGCGAACCCTT 120
Query 209 CCCAAGAACGCCGGGTTAAAAAGATGCGGGAAGAGTTGTAGATTGCGATGGACGAATTAT 268
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 121 CCCAAGAACGCCGGGTTAAAAAGGTGCGGAAAGAGTTGTAGATTGCGATGGACGAATTAT 180
Query 269 CTAAGACCCGATATCAAGAGAGGAGAGTTCTCTCTTCAAGAGGAAGAAACCATCATTCAA 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTAAGACCCGATATCAAGAGAGGAGAGTTCTCTCTTCAAGAGGAAGAAACCATCATTCAA 240
Query 329 CTTCATCGTCTTCTTGGAAACAAATGGTCCGCAATTGCTATTCACTTACCAGGAAGAACA 388
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 241 CTTCATCGTCTTCTTGGAAACAAATGGTCCGCAATTGCCATTCACTTGCCGGGAAGAACA 300
Query 389 GATAATGAAATCAAAAACTATTGGAACACACATATTAAAAAGAAACTCTTACGAATGGGG 448
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 301 GATAATGAAATCAAAAACTATTGGAACACTCATATAAAAAAGAAACTCTTACGAATGGGG 360
Query 449 ATTGATCCGGTGACTCATTGTCCCCGCATTAATCTTCTCCAGCTCTCTTCGTTTCTTACC 508
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 361 ATTGATCCGGTGACTCATTGTCCCCGAATCAATCTTCTCCAGCTCTCTTCGTTTCTCACC 420
Query 509 TCATCATTGTTTAAATCTATGTCACAACCGATGAATACTCCATTTGATCTCACTACTTCA 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCATCATTGTTTAAATCTATGTCACAACCGATGAATACTCCATTTGATCTCACTACTTCA 480
Query 569 AATATTAATCCTGATATCTTGAATCATCTCACTGCCTCTCTCAACAACGTTCAGACCGAA 628
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 AGTATTAATCCTGATATCTTGAATCACCTCACTGCCTCTCTCAACAACGTTCAGACCGAA 540
Query 629 TCATACCAACCAAACCAACAGCTTCAAAACGACCTAAACACTGACCAAACCACTTTCACC 688
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 541 TCATACCAACCAAACCAACAGCTTCAAAACGACCTAAACAATGATCAAACCACTTTCACC 600
Query 689 GGTTTGCTCAACTCA--A-CACCACCCGTTCAATGGCAAAACAATGGAGAATACTTGGGA 745
||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||
Sbjct 601 GGTTTGCTCAACTCATCAACACCACCGGTTCAATGGCAAAACAATGGAGAATACTTGGGA 660
Query 746 GATTATCACAGTTATACCGGTACAGGTGATCCATCTAAT-AACAAAGTCCCTCAAGCCGG 804
||||||| |||||||| |||| ||||||||||||||| | ||| ||||||||||| ||||
Sbjct 661 GATTATCTCAGTTATAACGGTTCAGGTGATCCATCTA-TGAACCAAGTCCCTCAAACCGG 719
Query 805 AAACTACTCATCAGCCGCATTTGTATCCGACCACATTAATGATGGTGAGAATTTTAAGGC 864
|||||||||||| ||||||||||||||||| || ||||| || ||||| |||||||||||
Sbjct 720 AAACTACTCATCGGCCGCATTTGTATCCGATCAAATTAACGACGGTGAAAATTTTAAGGC 779
Query 865 CGGATGGAATTTCAGTTCATCAATGCTAGCG-GGAACTTCATCGAGCAGCTCGACACCGT 923
||||||||||||||| |||||||||||| | |||||||| || ||||||||||||||||
Sbjct 780 CGGATGGAATTTCAGCTCATCAATGCTA-CATGGAACTTCGTCAAGCAGCTCGACACCGT 838
Query 924 TGAATTCGTCTTCGACTTTTTATGTCAATGGTGGAAGCGAAGATGATAGAGAGAGTTTTG 983
|| |||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 839 TGGATTCGTCTTCCAATTTTTATGTCAATGGTGGAAGCGAAGATGATAGAGAGAGTTACG 898
Query 984 GTAGCGACATGTTGATGTTTCATCATCATCATGATCATAATAATAATGCTTTGAATCTAT 1043
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 899 GTAGCGACATGTTGATGTTTCATCATCATCATGATCAGAATAATAATGCTTTGAATCTAT 958
Query 1044 CATAA 1048
|||||
Sbjct 959 CATAA 963
> Ahg489795 jgi|Araly1|489795|fgenesh2_kg.6__2929__AT4G09460.1
Length=850
Score = 99.0 bits (53), Expect = 7e-20
Identities = 76/86 (88%), Gaps = 6/86 (7%)
Strand=Plus/Plus
Query 374 TTACCAGGAAGAACAGATAATGAAATCAAAAACTATTGGAACACACATATTAAAAAGAAA 433
||||||||||||||||||||||||||||| || ||||||||||| |||||||||| ||||
Sbjct 332 TTACCAGGAAGAACAGATAATGAAATCAAGAATTATTGGAACACTCATATTAAAA-GAAA 390
Query 434 -CT-CTTACGA-ATGGGGATTGATCC 456
|| |||| | ||||| ||||||||
Sbjct 391 GCTTCTTA-GTCATGGG-ATTGATCC 414
> Ahg484718 jgi|Araly1|484718|fgenesh2_kg.5__710__AT3G30210.1
Length=1184
Score = 89.8 bits (48), Expect = 4e-17
Identities = 112/142 (79%), Gaps = 8/142 (6%)
Strand=Plus/Plus
Query 284 AAGAGAGGAGAGTTCTCTCTTCAAGAGGAAGAAACCATCATTCAACTTCA-TCGTCTTCT 342
||||||||| | || ||| |||||| |||| || |||| || ||||||| || ||| |
Sbjct 442 AAGAGAGGACAAATCACTCCTCAAGAAGAAGGAATCATCCTTGAACTTCATTC-CCTT-T 499
Query 343 -TGGAAACAAATGGTCCGCAATTGCTA-TTCACTTACCAGGAAGAACAGATAATGAAATC 400
|| ||||| ||||| |||| || | | | |||||||| |||||||||||||||||
Sbjct 500 GGGGTAACAAGTGGTCTACAATCGCAAGAT-ATTTACCAGGTCGAACAGATAATGAAATC 558
Query 401 AAAAACTATTGGA-ACACACAT 421
||||||||||||| | ||||||
Sbjct 559 AAAAACTATTGGAGA-ACACAT 579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43078896210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5