BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G54240.1 Length=1210 Score E Sequences producing significant alignments: (Bits) Value Ahg917111 jgi|Araly1|917111|Al_scaffold_0008_1862 1347 0.0 > Ahg917111 jgi|Araly1|917111|Al_scaffold_0008_1862 Length=849 Score = 1347 bits (729), Expect = 0.0 Identities = 810/850 (95%), Gaps = 2/850 (0%) Strand=Plus/Plus Query 1 ATGGCGCCTCGTCTTTTCACATGTTTTGGCGTCAAAGGATCTTCAACTTCCACCACCACC 60 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| Sbjct 1 ATGGCGCCTCGTCTTTTCGCATGTTTTGGCGTCAAAGGATCTTCAACTTCCACCACTACC 60 Query 61 GGAAAAGGTATTTCCGGTCATAACGCGGCTAATGTAGCTGCTGATGTTCCGGTAGGTGAT 120 |||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||| Sbjct 61 GGAAAAGGAATTTCCGGTCATAATGCGGCTGTTGTAGCTGCTGATGTTCCGGTAGGTGAT 120 Query 121 GGACCTATTCTTGTTCAGCTTTTCTCATCTCAAGGATGTAAAACTTCGCCTGAGGCGGAG 180 |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 121 GGACCTGTTCTTGTTCAGCTTTTCTCATCTCAAGGATGTAAAACTTCGCCGGAGGCAGAG 180 Query 181 ATGCTTGTATCACGTCTTGGACGTGGTGATTTCGATGGAAAGATCCGTCGAGACGGTGGA 240 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 181 ATGCTTGTATCACGTCTTGGACGTGGTGACTTCGATGGAAAGATCCGTCGAGACGGTGGA 240 Query 241 TCTAGTGGTTCTCCGGCGATGGTTTTGGTTTTTCACGTTGATTATTGGGATTATCTTGGA 300 ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCTGGTGGTTCTCCTGCGATGGTTTTGGTTTTTCACGTTGATTATTGGGATTATCTTGGA 300 Query 301 TGGAAAGATCCTTATGGATCGAGTCAGTGGACCGTGAGACAAAAGGCCTATATCGAGGCT 360 |||||||||||||||||||| |||||||||||| | || |||||||| ||||||||||| Sbjct 301 TGGAAAGATCCTTATGGATCTAGTCAGTGGACCATAAGGCAAAAGGCGTATATCGAGGCG 360 Query 361 TTGAATCAAGATACAATGTTTACTCCACAGTTTGTTGTTCAAGGTCGTGTTCAATTACTT 420 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 361 TTGAATCAAGATACAATGTTTACTCCACAGTTTGTTGTCCAAGGTCGTGTTCAATTACTT 420 Query 421 GGGAATGAAGAAGAGTCCTTGCTTAAGTCTATTGTTGAAGCTCCTAGGTTTCCGTCTCCT 480 ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| Sbjct 421 GGGAATGAAGAAGAGACCTTGCTTAAGTCTATTGTTGAAGCTCCTAGGTTTCCTTCTCCG 480 Query 481 GCGTTTCGGGCCACATTTCAAAGACCAACATCAGAAACCCTTCAAGTATCTCTCACCGGA 540 ||||||||||||||||| || |||||||| ||||||||||| |||||||||||||| ||| Sbjct 481 GCGTTTCGGGCCACATTCCAGAGACCAACCTCAGAAACCCTACAAGTATCTCTCACAGGA 540 Query 541 GCTTTGAGGATGAAAGTGGACTCGAGCGGGATCGATATAATGGTGGCGCTATATGAAAAC 600 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||| Sbjct 541 GCTTTGAGGATGAAAGTAGACTCGAGCGGGATCGATATAATGGTGGCGCTATACGAGAAC 600 Query 601 GGTTTGGTGAATGATTGCGCTCGAGGAGAGAACTCAGGAAGAGTCTTGTCCAATGACTAC 660 |||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct 601 AGTTTAGTGAATGATTGCCCTCGAGGAGAGAACTCAGGAAGAGTTTTGTCCAATGACTAC 660 Query 661 GTTGTAAGAAAGCTAGAAAAGTTATGCACCGTTAAAGATTTAACGG-GAAAAAAGACGGT 719 ||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||| Sbjct 661 GTTGTAAGAAAGCTAGAAAAGTTATGCACGGTTAAAGATTTAACGGCG-AAAAAGACGGT 719 Query 720 GTCAGGGACAGCTCATTTCACGGTTTGGGATGGATTCAACAGCTCTAAATGTGGAGTCGC 779 ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 GTCAGAGACGGCTCATTTCACGGTTTGGGATGGATTCAACAGCTCTAAATGTGGAGTCGC 779 Query 780 TGTTTTTCTACAGAACACATCTCTTCAAATTTTTGGTACGCAGAGTTTTCAATTGCCTGA 839 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 780 TGTTTTTCTACAGAACACATCTCTTCAAATTTTTGGTACTCAGAGTTTTCAATTGCCTGA 839 Query 840 TGAGATTTGA 849 |||||||||| Sbjct 840 TGAGATTTGA 849 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45175656645 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5