BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54240.1
Length=1210
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917111 jgi|Araly1|917111|Al_scaffold_0008_1862 1347 0.0
> Ahg917111 jgi|Araly1|917111|Al_scaffold_0008_1862
Length=849
Score = 1347 bits (729), Expect = 0.0
Identities = 810/850 (95%), Gaps = 2/850 (0%)
Strand=Plus/Plus
Query 1 ATGGCGCCTCGTCTTTTCACATGTTTTGGCGTCAAAGGATCTTCAACTTCCACCACCACC 60
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGCGCCTCGTCTTTTCGCATGTTTTGGCGTCAAAGGATCTTCAACTTCCACCACTACC 60
Query 61 GGAAAAGGTATTTCCGGTCATAACGCGGCTAATGTAGCTGCTGATGTTCCGGTAGGTGAT 120
|||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 61 GGAAAAGGAATTTCCGGTCATAATGCGGCTGTTGTAGCTGCTGATGTTCCGGTAGGTGAT 120
Query 121 GGACCTATTCTTGTTCAGCTTTTCTCATCTCAAGGATGTAAAACTTCGCCTGAGGCGGAG 180
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 121 GGACCTGTTCTTGTTCAGCTTTTCTCATCTCAAGGATGTAAAACTTCGCCGGAGGCAGAG 180
Query 181 ATGCTTGTATCACGTCTTGGACGTGGTGATTTCGATGGAAAGATCCGTCGAGACGGTGGA 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 ATGCTTGTATCACGTCTTGGACGTGGTGACTTCGATGGAAAGATCCGTCGAGACGGTGGA 240
Query 241 TCTAGTGGTTCTCCGGCGATGGTTTTGGTTTTTCACGTTGATTATTGGGATTATCTTGGA 300
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCTGGTGGTTCTCCTGCGATGGTTTTGGTTTTTCACGTTGATTATTGGGATTATCTTGGA 300
Query 301 TGGAAAGATCCTTATGGATCGAGTCAGTGGACCGTGAGACAAAAGGCCTATATCGAGGCT 360
|||||||||||||||||||| |||||||||||| | || |||||||| |||||||||||
Sbjct 301 TGGAAAGATCCTTATGGATCTAGTCAGTGGACCATAAGGCAAAAGGCGTATATCGAGGCG 360
Query 361 TTGAATCAAGATACAATGTTTACTCCACAGTTTGTTGTTCAAGGTCGTGTTCAATTACTT 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 TTGAATCAAGATACAATGTTTACTCCACAGTTTGTTGTCCAAGGTCGTGTTCAATTACTT 420
Query 421 GGGAATGAAGAAGAGTCCTTGCTTAAGTCTATTGTTGAAGCTCCTAGGTTTCCGTCTCCT 480
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 421 GGGAATGAAGAAGAGACCTTGCTTAAGTCTATTGTTGAAGCTCCTAGGTTTCCTTCTCCG 480
Query 481 GCGTTTCGGGCCACATTTCAAAGACCAACATCAGAAACCCTTCAAGTATCTCTCACCGGA 540
||||||||||||||||| || |||||||| ||||||||||| |||||||||||||| |||
Sbjct 481 GCGTTTCGGGCCACATTCCAGAGACCAACCTCAGAAACCCTACAAGTATCTCTCACAGGA 540
Query 541 GCTTTGAGGATGAAAGTGGACTCGAGCGGGATCGATATAATGGTGGCGCTATATGAAAAC 600
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 541 GCTTTGAGGATGAAAGTAGACTCGAGCGGGATCGATATAATGGTGGCGCTATACGAGAAC 600
Query 601 GGTTTGGTGAATGATTGCGCTCGAGGAGAGAACTCAGGAAGAGTCTTGTCCAATGACTAC 660
|||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 AGTTTAGTGAATGATTGCCCTCGAGGAGAGAACTCAGGAAGAGTTTTGTCCAATGACTAC 660
Query 661 GTTGTAAGAAAGCTAGAAAAGTTATGCACCGTTAAAGATTTAACGG-GAAAAAAGACGGT 719
||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||
Sbjct 661 GTTGTAAGAAAGCTAGAAAAGTTATGCACGGTTAAAGATTTAACGGCG-AAAAAGACGGT 719
Query 720 GTCAGGGACAGCTCATTTCACGGTTTGGGATGGATTCAACAGCTCTAAATGTGGAGTCGC 779
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GTCAGAGACGGCTCATTTCACGGTTTGGGATGGATTCAACAGCTCTAAATGTGGAGTCGC 779
Query 780 TGTTTTTCTACAGAACACATCTCTTCAAATTTTTGGTACGCAGAGTTTTCAATTGCCTGA 839
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 780 TGTTTTTCTACAGAACACATCTCTTCAAATTTTTGGTACTCAGAGTTTTCAATTGCCTGA 839
Query 840 TGAGATTTGA 849
||||||||||
Sbjct 840 TGAGATTTGA 849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45175656645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5