BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54250.1
Length=2305
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495510 jgi|Araly1|495510|fgenesh2_kg.8__1326__AT5G54250.1 3461 0.0
> Ahg495510 jgi|Araly1|495510|fgenesh2_kg.8__1326__AT5G54250.1
Length=2121
Score = 3461 bits (1874), Expect = 0.0
Identities = 2041/2123 (96%), Gaps = 6/2123 (0%)
Strand=Plus/Plus
Query 57 TCTCTCTCTGTGTTGCATGCGTTAGTACTTTCAATGGCCACAGAACAAGAATTCACACGC 116
||||||||| |||||||||||||||||||||| ||||||||||| || |||| |||||||
Sbjct 1 TCTCTCTCTCTGTTGCATGCGTTAGTACTTTCGATGGCCACAGAGCACGAATCCACACGC 60
Query 117 GCATCACGCTTCTCACGTGACTCAAGCAGCGTTGGATATTACTCagaagaagataacacg 176
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 GCATCACGCTTCTCACGTGACTCAAGCAGCGTAGGATATTACTCAGAAGAAGATAACACG 120
Query 177 gaggaggaagatgaagaagaagaagagatggaagaaatcgaagaagaggaggaagaagag 236
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAGGAGGAAGAGGAAGATGAAGAAGAGATGGAAGAAATCGAAGAAGAGGAGGAAGAAGAG 180
Query 237 gaagaagaagaCCCACGTATAGGGCTCACGTGCGGAGGAAGAAGAAACGGGTCAAGTAAT 296
||||||||||| |||||| |||| ||| ||||||||||||||||||||||||||||||||
Sbjct 181 GAAGAAGAAGATCCACGTGTAGGTCTCGCGTGCGGAGGAAGAAGAAACGGGTCAAGTAAT 240
Query 297 AACAACAAATGGATGATGTTGGGTCGAATACTTGACCCGAGATCCAAATGGGTTCGAGAA 356
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 AACAACAAATGGATGATGTTGGGTCGGATACTTGACCCGAGATCCAAATGGGTTCGAGAA 300
Query 357 TGGAACAAAGTCTTTCTCCTTGTATGCGCAACGGGTCTATTCGTAGACCCACTTTTTCTC 416
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 301 TGGAACAAAGTCTTTCTCCTTGTATGCGCGACAGGTCTATTCGTAGACCCACTTTTTCTC 360
Query 417 TATACCCTATCAGTGAGCGACACGTGTATGTGTCTCCTCGTCGACGGTTGGCTTGCTCTT 476
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TATACCCTATCAGTGAACGACACGTGTATGTGTCTCCTCGTCGACGGTTGGCTTGCTCTC 420
Query 477 ACCGTCACTGCCTTACGCTCCATGACCGATCTTTTGCACCTT-TGGAACATTTGGATTCA 535
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 421 ACCGTCACTGCCTTACGCTCCATGACCGATCTTTTGCA-CTTATGGAACATTTGGATTCA 479
Query 536 GTTCAAGATTGCTCGCCGGTGGCCTTATCCCGGCGGAGATAGCGACGGCGATACCAACAA 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GTTCAAGATTGCTCGCCGGTGGCCTTATCCCGGCGGAGATAGCGACGGCGATACCAACAA 539
Query 596 AGGAGGAGGGACACGTGGCTCTACGAGGGTTGCTCCACCTTACGTTAAGAAGAATGGGTT 655
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGGAGGTGGGACACGTGGCTCTACGAGGGTTGCTCCACCTTACGTTAAGAAGAATGGGTT 599
Query 656 CTTCTTCGATCTCTTCGTCATATTACCATTACCTCAGGTGGTGTTGTGGGTAGTGATACC 715
||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 600 CTTCTTCGATCTCTTCGTCATCTTACCATTGCCTCAGGTGGTGTTGTGGGTGGTGATACC 659
Query 716 TTCTCTTCTAAAGAGAGGCTCTGTGACTTTAGTGGTGTCAGTTTTGCTTGTAACATTCCT 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTCTCTTCTAAAGAGAGGCTCTGTGACTTTAGTGGTGTCAGTTTTGCTTGTAACATTCCT 719
Query 776 CTTCCAATATCTACCGAAAATATATCACTCAATCCGCCATCTCCGCCGCAATGCTACTCT 835
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 720 CTTTCAATATCTACCGAAAATATATCATTCAATCCGCCATCTCCGCCGCAATGCTACTCT 779
Query 836 CTCGGGTTACATCTTCGGCACCGTTTGGTGGGGCATTGCACTCAACATGATCGCTTATTT 895
|| ||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 780 CTTGGGTTACATCTTCGGCACCGTCTGGTGGGGAATTGCACTCAACATGATTGCTTATTT 839
Query 896 CGTCGCGGCTCATGCG-GCAGGAGCGTGTTGGTACTTGTTAGGAGTTCAAAGGTCAGCGA 954
|||||||||||||| | |||||||| |||||||| ||||||||||||||||| |||||||
Sbjct 840 CGTCGCGGCTCATG-GAGCAGGAGCATGTTGGTATTTGTTAGGAGTTCAAAGATCAGCGA 898
Query 955 AATGTCTTAAGGAACAATGTGAAAACACGATAGGATGCGACTTAAGGATGTTGTCATGTA 1014
|||||||||| ||||||||||||||||| || ||||| ||| ||||||||||||||||||
Sbjct 899 AATGTCTTAAAGAACAATGTGAAAACACAATGGGATGTGACATAAGGATGTTGTCATGTA 958
Query 1015 AGGAACCGGTGTACTATGGAACGACCGTGATGGTCCTTGACAGAGCTAGACTTGCTTGGG 1074
||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 959 AGGAACCTGTGTACTATGGAACGACCGTAATGGTCCTTGATAGAGCTAGACTTGCTTGGG 1018
Query 1075 CACAAAACCATCAAGCTCGATCTGTTTGCTTAGATATTAACACCAATTACACATATGGTG 1134
|||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1019 CACAAAACCATCAAGCCCGATCTGTTTGCTTAGATATAAACACCAACTACACATATGGTG 1078
Query 1135 CTTATCAATGGACCATTCAACTTGTGAGCAGTGAGAGTCGGTTGGAGAAAATCCTTTTTC 1194
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1079 CTTATCAATGGACCATTCAACTTGTGAGCAATGAGAGCCGGTTGGAGAAAATCCTTTTTC 1138
Query 1195 CTATCTTTTGGGGTCTCATGACTCTCAGCACATTTGGGAATTTGGAGAGCACAACAGAAT 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CTATCTTTTGGGGTCTCATGACTCTCAGCACATTTGGGAATTTGGAGAGCACAACAGAAT 1198
Query 1255 GGTCGGAGGTTGTCTTCAATATCATAGTTCTAACAAGTGGTCTTCTTCTCGTTACCATGT 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GGTCGGAGGTTGTCTTCAATATCATAGTTCTAACAAGTGGTCTTCTTCTCGTTACCATGT 1258
Query 1315 TGATTGGTAACATCAAGGTATTTCTGCACGCTACAACTTCAAAGAAGCAAGCAATGCACT 1374
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1259 TGATTGGTAACATCAAGGTGTTTCTGCACGCAACAACTTCAAAGAAGCAAGCAATGCACT 1318
Query 1375 TGAAAATGAGGAACATAGAGTGGTGGATGAAGAAGAGACATTTGCCAATAGGGTTTAGAC 1434
||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||| |
Sbjct 1319 TGAAAATGAGGAACATAGAGTCGTGGATGAAGAAGAGACATTTGCCATTAGGCTTTAGGC 1378
Query 1435 AGCGAGTCCGCAACTATGAGCGGCAAAGATGGGCTGCTATGCGCGGTGTAGACGAGTGTG 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 AGCGAGTCCGCAACTATGAGCGGCAAAGATGGGCTGCTATGCGCGGTGTAGACGAGTGTG 1438
Query 1495 AAATGGTTCAGAACCTTCCAGAAGGTCTTAGGAGAGACATCAAGTACCACCTCTGTCTAG 1554
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1439 AAATGGTTCAGAACCTTCCAGAAGGTCTTAGGAGAGACATCAAGTACCATCTCTGTCTAG 1498
Query 1555 ACTTAGTCCGGCAGGTTCCATTGTTTCAGCATATGGATGATTTGGTGCTTGAGAATATAT 1614
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1499 ACTTAGTCCGGCAGGTTCCATTGTTTCAACATATGGATGATTTGGTGCTTGAGAATATAT 1558
Query 1615 GCGACCGTGTGAAGTCTCTCATTTTCACCAAAGGAGAAACAATTCAGAAAGAAGGAGATG 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 GCGACCGTGTGAAGTCTCTCATTTTCACCAAAGGAGAAACAATTCAGAAAGAAGGAGATG 1618
Query 1675 CAGTACAGAGAATGTTATTCGTAGTGAGAGGTCATCTTCAAAGCAGTCAGTTACTAAGAG 1734
|||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1619 CAGTGCAGAGAATGTTGTTCGTAGTGAGAGGTCATCTTCAGAGCAGTCAGTTGTTAAGAG 1678
Query 1735 ACGGTGTCAAGAGCTGTTGCATGTTAGGTCCGGGAAATTTCAGCGGCGACGAGCTTCTCT 1794
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1679 ACGGTGTCAAGAGCTGTTGCATGTTAGGTCCGGGAAATTTTAGTGGCGACGAGCTTCTCT 1738
Query 1795 CGTGGTGTCTCCGACGACCCTTCGTGGAGAGGCTACCGCCTTCTTCTTCAACGCTTGTAA 1854
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1739 CGTGGTGTCTCCGACGACCCTTCGTGGAGAGGCTACCGCCGTCCTCTTCAACGCTTGTAA 1798
Query 1855 CACTCGAGACCACCGAAGCGTTTGGCCTCGACGCCGAAGACGTTAAGTACGTGACGCAGC 1914
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1799 CACTTGAGACCACCGAAGCGTTTGGCCTCGACGCCGAAGACGTTAAGTACGTGACGCAAC 1858
Query 1915 ATTTTCGTTACACTTTTGTTAACGAGAAAGTCAAACGTAGTGCTCGCTATTATTCTCCC- 1973
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 1859 ATTTTCGTTACACTTTTGTTAACGAGAAAGTCAAACGCAGTGCCCGCTATTATTC-CCCT 1917
Query 1974 GGATGGCGGACTTGGGCCGCGGTTGCGGTTCAGCTAGCTTGGCGAAGGTACAAGCATAGG 2033
||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1918 GGATGGCGGACTTGGGCTGCGGTTGCGGTTCAGCTCGCTTGGCGGAGGTACAAGCATAGG 1977
Query 2034 CTAACGTTGACATCACTGTCGTTCATAAGGCCGAGAAGACCATTGTCAAGATGTGCGTCC 2093
||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 1978 CTAACGTTGACGTCACTGTCGTTCATAAGACCGAGAAGACCGTTGTCAAGATGTGCATCG 2037
Query 2094 TTAGGAGAAGACAAATTGAGGCTCTATGCAGCAATATTAACCTCTCCTAAACCCAATCCC 2153
||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||
Sbjct 2038 TTAGGAGAAGACAAATTGAGGCTCTATACAGCAATTTTAACCTCTCCTAAACCTAATCCC 2097
Query 2154 GACGATTTTGATGATTATTGATT 2176
|||||||| ||||||||||||||
Sbjct 2098 GACGATTTCGATGATTATTGATT 2120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86807668355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5