BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G54260.1 Length=2574 Score E Sequences producing significant alignments: (Bits) Value Ahg495511 jgi|Araly1|495511|fgenesh2_kg.8__1327__AT5G54260.1 2571 0.0 Ahg357625 jgi|Araly1|357625|fgenesh1_pg.C_scaffold_8001412 490 2e-137 > Ahg495511 jgi|Araly1|495511|fgenesh2_kg.8__1327__AT5G54260.1 Length=2447 Score = 2571 bits (1392), Expect = 0.0 Identities = 1480/1524 (97%), Gaps = 0/1524 (0%) Strand=Plus/Plus Query 144 TTACTGAGCTGCAAACACTTGGCATCATGTCTAGGGAGGATTTTAGTGATACACTTCGAG 203 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2 TTACTGAGCTGCAAACACTTGCCATCATGTCTAGGGAGGATTTTAGTGATACACTTCGAG 61 Query 204 TACTTGTTGCAACTGATTGCCACTTGGGCTACATGGAGAAGGATGAAATTAGGCGGCATG 263 |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 62 TACTTGTTGCAACTGATTGCCACTTGGGTTACATGGAGAAGGATGAAATAAGGCGGCATG 121 Query 264 ATTCATTTAAGGCTTTCGAAGAGATATGTTCTATAGCTGAGGAGAAACAGGTGGACTTCT 323 |||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||| Sbjct 122 ATTCGTTTAAGGCTTTTGAAGAGATATGTTCTATAGCGGAGGAAAAACAGGTGGACTTCT 181 Query 324 TACTCCTCGGAGGTGATCTTTTTCATGAGAATAAACCCTCTAGAACTACGTTAGTTAAAG 383 ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 182 TACTCCTTGGAGGTGATCTTTTTCATGAGAATAAACCCTCTAGAACTACGCTAGTTAAAG 241 Query 384 CCATTGAAATTCTTCGTCGCCACTGTCTGAATGATAAACCAGTGCAGTTTCAAGTAGTCA 443 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 242 CCATTGAAATTCTTCGCCGCCACTGTCTTAATGATAAACCAGTGCAGTTTCAAGTAGTCA 301 Query 444 GCGACCAGACAGTAAATTTTCAGAATGCGTTTGGTCAAGTCAATTACGAGGATCCACACT 503 |||||||||| ||||||||||| |||||||||||||| || ||||||||||||||||||| Sbjct 302 GCGACCAGACTGTAAATTTTCAAAATGCGTTTGGTCATGTAAATTACGAGGATCCACACT 361 Query 504 TCAATGTAGGCTTGCCCGTGTTCAGTATTCATGGAAACCATGATGATCCAGCCGGAGTGG 563 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 362 TCAATGTAGGCTTGCCCGTGTTCAGTATTCATGGAAACCATGATGATCCAGCCGGAGTGG 421 Query 564 ACAATCTTTCTGCAATTGATATTCTTTCCGCATGCAACCTTGTGAACTATTTTGGAAAGA 623 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 422 ACAACCTTTCTGCAATTGATATTCTTTCCGCATGCAACCTTGTGAACTATTTTGGAAAGA 481 Query 624 TGGTTCTTGGTGGTTCTGGTGTTGGCCAGATTACTCTCTACCCTATACTTATGAAGAAGG 683 |||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||| Sbjct 482 TGGTTCTTGGTGGTTCAGGTGTTGGCCAGATTTCCCTCTACCCTATACTTATGAAGAAGG 541 Query 684 GCTCAACAACCGTGGCTCTCTATGGTTTAGGAAACATCAGGGATGAACGTCTCAATAGAA 743 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 542 GTTCAACAACCGTGGCTCTCTATGGTTTAGGAAACATCAGGGATGAACGTCTTAATAGAA 601 Query 744 TGTTTCAGACCCCACATGCTGTCCAATGGATGAGGCCTGAAGTTCAAGAAGGATGTGATG 803 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 602 TGTTTCAGACCCCACATGCTGTCCAATGGATGAGGCCTGAAGTTCAAGAAGGATGTGATG 661 Query 804 TTTCTGACTGGTTCAACATTCTGGTGCTTCATCAAAATAGGGTGAAATCAAACCCCAAAA 863 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 662 TTTCTGACTGGTTCAACATTCTGGTGCTTCATCAAAATAGGGTGAAATCAAACCCCAAAA 721 Query 864 ATGCAATAAGTGAGCACTTTCTTCCACGTTTCCTCGACTTCATTGTGTGGGGCCATGAGC 923 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 722 ATGCAATAAGTGAGCACTTTCTTCCACGGTTCCTCGACTTCATTGTGTGGGGCCATGAGC 781 Query 924 ATGAATGCCTAATCGACCCCCAGGAGGTATCTGGAATGGGCTTCCACATCACACAACCAG 983 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 782 ATGAATGCCTTATCGACCCCCAGGAGGTATCTGGGATGGGCTTCCACATCACACAACCAG 841 Query 984 GATCTTCTGTGGCAACATCACTTATTGATGGGGAATCGAAGCCAAAACATGTTCTTCTCT 1043 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 842 GATCTTCTGTGGCAACATCACTTATTGATGGGGAATCAAAGCCAAAACATGTTCTTCTCT 901 Query 1044 TAGAAATCAAGGGAAATCAATATCGTCCTACGAAGATACCTTTGACATCTGTGAGGCCTT 1103 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 902 TAGAAATCAAGGGAAATCAATATCGTCCTACGAAGATACCTTTGACATCTGCGAGGCCTT 961 Query 1104 TTGAGTATACAGAGATTGTTTTAAAGGATGAAAGTGATATTGATCCCAATGATCAAAACT 1163 | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 962 TCGAGTATACAGAGATTGTTTTAAAGGATGAAGGTGATATTGATCCCAATGATCAAAACT 1021 Query 1164 CAATTCTGGAACACTTGGATAAAGTGGTCAGAAATCTAATAGAGAAAGCTAGCAAAAAAG 1223 |||| || || |||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 1022 CAATCCTCGAGCACTTGGATAAAGTGGTCAGAAATCTAATAGAGAAAGCCAGCAAAAATG 1081 Query 1224 CTGTTAACAGATCAGAGATCAAACTCCCATTGGTTCGAATCAAGGTAGATTATTCTGGAT 1283 |||||||||||||||||||||| ||||| ||||||||||||||||||||||| || |||| Sbjct 1082 CTGTTAACAGATCAGAGATCAAGCTCCCGTTGGTTCGAATCAAGGTAGATTACTCAGGAT 1141 Query 1284 TTATGACGATAAATCCTCAAAGATTTGGACAGAAATATGTGGGAAAGGTTGCAAATCCCC 1343 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1142 TTATGACGATAAATCCTCAAAGGTTTGGACAGAAATATGTGGGAAAGGTTGCAAATCCCC 1201 Query 1344 AGGACATTTTGATATTTTCCAAGGCTTCTAAGAAGGGTCGGAGCGAAGCCAACATCGATG 1403 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1202 AGGACATTTTAATATTTTCCAAGGCTTCTAAGAAGGGTCGGAGCGAAGCCAACATCGATG 1261 Query 1404 ATTCTGAGCGGCTTCGTCCAGAAGAACTGAACCAGCAGAATATAGAAGCTTTAGTAGCTG 1463 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1262 ATTCTGAGCGGCTTCGTCCAGAGGAACTGAACCAGCAGAATATAGAAGCTTTAGTAGCTG 1321 Query 1464 AAAGCAACCTGAAAATGGAGATCCTTCCAGTTAACGATCTGGATGTTGCTCTTCACAATT 1523 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1322 AAAGCAACCTGAAAATGGAGATCCTGCCAGTTAACGATCTGGATGTTGCTCTTCACAATT 1381 Query 1524 TTGTGAACAAGGATGATAAACTAGCCTTCTACTCATGCGTTCAGTACAATCTTCAAGAGA 1583 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1382 TTGTGAACAAGGATGATAAACTAGCTTTCTACTCATGCGTTCAGTACAATCTTCAAGAGA 1441 Query 1584 CTCGTGGTAAACTTGCAAAGGATTCAGATGCCAAGAAATTTGAGGAAGATGACTTGATTC 1643 ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 1442 CTCGTGGTAAACTTGCAAAGGATTCAGTTGCCCAGAAATTTGAGGAAGATGACTTGATTC 1501 Query 1644 TTAAAGTGGGAGAGTGCTTAGAGG 1667 |||||||||||||||||||||||| Sbjct 1502 TTAAAGTGGGAGAGTGCTTAGAGG 1525 Score = 1275 bits (690), Expect = 0.0 Identities = 843/911 (93%), Gaps = 34/911 (4%) Strand=Plus/Plus Query 1667 GAACGCTTGAAAGATAGGTCCACTCGACCCACTGGTTCCTCACAGTTTTTATCCACTGGA 1726 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 1564 GAACGTTTGAAAGATAGGTCCACTCGACCCACTGGTTCCTCGCAGTTTTTATCCACAGGA 1623 Query 1727 TTGACTTCAGAGAATTTGAC-AAAAGGAAGCAGTGGCATCGCGAATGCTTCGTTCAGTGA 1785 ||||| |||||||||||||| |||| ||||||||||||||||| |||||||||||||||| Sbjct 1624 TTGACATCAGAGAATTTGACGAAAA-GAAGCAGTGGCATCGCGGATGCTTCGTTCAGTGA 1682 Query 1786 TGATGAAGACACAACTCAGATGTCTGGTTTAGCT-CCTCCCACTAGAGGACGAAGAGGTT 1844 |||||||||||| ||||||||||||||||||| | ||| ||||||||||||| ||||||| Sbjct 1683 TGATGAAGACACGACTCAGATGTCTGGTTTAG-TGCCTGCCACTAGAGGACGGAGAGGTT 1741 Query 1845 CATCCACTGCTAATACAACTCGTGGTAGAGCTAAAGCCCCAACCAGAGGACGAGGCCGTG 1904 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 1742 CATCCACTGCTAATACATCTCGTGGTAGAGCTAAAGCCCCAACCAGAGGAAGAGGCCGTG 1801 Query 1905 GTAAGGCCTCAAGTGCGATGAAGCAAACCACTCTTGATAGTTCTCTTGGTTTCCGCCAGT 1964 |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 1802 GTAAGGCCTCAAGTGCGATGAAGCAAACCACTCTTGATGGTTCTCTTGGTTTTCGCCAGT 1861 Query 1965 CTCAAAGATCTGCTTCGGCTGCTGCTTCAGCTGCCTTCAAAAGTGCTTCCACCATTGGAG 2024 |||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||| | Sbjct 1862 CTCAAAGATCTGCTTCAGCTGCTGCTTCAGCTTCCTTCAAAAATGCTTCCACCATTGGTG 1921 Query 2025 AAGATGATGTAGATTCTCCTTCAAGCGAAGAAGTC-GAGCCTGAAGATTTTAACAAACCT 2083 |||||||||||||||||||||||||||| |||| | |||||||||||||||| ||||| | Sbjct 1922 AAGATGATGTAGATTCTCCTTCAAGCGAGGAAG-CAGAGCCTGAAGATTTTACCAAACTT 1980 Query 2084 GACAGCAGTTCGGAGGACGATGAGAGCACTAAAGGCAAAGGACGTAAAAGACCAGCTACT 2143 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1981 GACAGCACTTCGGAGGACGATGAGAGCACTAAAGGCAAAGGACGTAAAAGACCAGCTACT 2040 Query 2144 ACTAAGAGAGGCAGAGGTAGAGGTTCTGGGACTTCAAAACGTGGTAGAAAAAACGAAAGC 2203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2041 ACTAAGAGAGGCAGAGGTAGAGGTTCTGGGACTTCAAAACGTGGTAGAAAAAACGAAAGC 2100 Query 2204 TCTTCTTCACTTAATAGGCTACTCAGTAGCAAAGACGATGACGAGGACGAAGATGATGAA 2263 |||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| Sbjct 2101 TCTTCTTCACTTCATAGGCTACTCAGTAGCAAAGACAATGACGATGACGAAGATGATGAA 2160 Query 2264 GACAGAGAAAAGAAGCTTAACAAATCTCAGCCTCGGGTTACAAGGAACTATGGAGCTCTA 2323 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2161 GACATAGAAAAGAAGCTTAACAAATCTCAGCCTCGGGTTACAAGGAACTATGGAGCTCTA 2220 Query 2324 AGAAGATAAATACATATCAAACCCCAATCTCTGACATCACAACGAAGCTTCATTTTTCTG 2383 ||||||||||| | || | | || ||| || ||||||||||||||||| Sbjct 2221 AGAAGATAAAT-C----CA--C---A-TC----ACA--AC---GAAGCTTCATTTTTCTG 2260 Query 2384 TTATTTTCTAGCGACCTCTCAAGCGGAACAACTTCTGAAGAAGAGAAATTAGTACTAACA 2443 ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 2261 TTATTTTCTAGCGACCTCTCAAGCGAAACAACTTCTGAAGAAGAGAAATTAGT-CTAACA 2319 Query 2444 AGAGTTCTGTGAGATGATGTACAGAGAATTTTGTAGTGtt-tttt-ttt-CTTGCTCTTT 2500 |||||| | |||| || | ||||||||||| |||||||| |||| ||| |||||||||| Sbjct 2320 AGAGTTTTTTGAGCTG-T--ACAGAGAATTTCGTAGTGTTCTTTTATTTTCTTGCTCTTT 2376 Query 2501 TTAAGGTTACGTTGTTGATGAATGAGGCAATATGATTAA-CGTCAGTAAGAAGTCTAAAA 2559 |||| ||| |||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct 2377 TTAAAGTTTTGTTGTTGATGAATGCGGCAATATGATTACTCGTCAGTAAGAAGTCTAAAA 2436 Query 2560 CTGTAGTAACC 2570 ||||||||||| Sbjct 2437 CTGTAGTAACC 2447 > Ahg357625 jgi|Araly1|357625|fgenesh1_pg.C_scaffold_8001412 Length=663 Score = 490 bits (265), Expect = 2e-137 Identities = 311/333 (93%), Gaps = 3/333 (1%) Strand=Plus/Plus Query 236 ATGGAGAAGGATGAAATTAGGCGGCATGATTCATTTAAGGCTTTCGAAGAGATATGTTCT 295 ||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||| Sbjct 1 ATGGAGAAGGATGAAATAAGGCGGCATGATTCATTTAAGGCTTTTAAAGAGATATGCTCT 60 Query 296 ATAGCTGAGGAGAAACAGGTGGACTTCTTACTCCTCGGAGGTGATCTTTTTCATGAGAAT 355 ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 61 ATAGCGGAGGAGAAACAGGTGAACTTCTTACTCCTCGGAGGTGATATTTTTCATGAGAAT 120 Query 356 AAACCCTCTAGAACTACGTTAGTTAAAGCCATTGAAATTCTTCGTCGCCACTGTCTGAA- 414 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct 121 AAACCCTCTAGAACTACGCTAGTTAAAGCCATTGAAATTCTTCGTCGCCACTGTCTTAAC 180 Query 415 TGATAAACCAGTGCAGTTTCAAGTAGTCAGCGACCAGACAGTAAATTTTCAGAATGCGTT 474 | ||||||||||||| |||||||| |||||||||||||| ||||||||||| |||||||| Sbjct 181 T-ATAAACCAGTGCATTTTCAAGTTGTCAGCGACCAGACTGTAAATTTTCAAAATGCGTT 239 Query 475 TGGTCAAGTCAATTACGAGGATCCACACTTCAATGTAGGCTTGCCCGTGTTCAGTATTCA 534 |||||| || || ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 240 TGGTCATGTAAACCACGAGGATCCACACTTCAATGTAGGTTTGCCCGTGTTCAGTATTCA 299 Query 535 TGGAAACCATGATGATCCAGCCGGAGTGG-ACA 566 |||||||||||||||||||||| |||||| ||| Sbjct 300 TGGAAACCATGATGATCCAGCCAGAGTGGTACA 332 Score = 156 bits (84), Expect = 9e-37 Identities = 98/105 (93%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 843 GGGTGAAATCAAACCCCAAAAATGCAATAAGTGAGCACTTTCTTCCACGTTTCCTCGACT 902 ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 551 GGGTGAAATCAAAACCCAAAAATGCAATAAGTGAGCACTTTCTTCCACGGTTCCTTGACT 610 Query 903 TCATTGTGTGGGGCCATGAGCATGAATGCCTAATCGACCCCCAGG 947 ||||||||| ||||||||||||||||||||| || |||| ||||| Sbjct 611 TCATTGTGTCGGGCCATGAGCATGAATGCCTTATTGACCGCCAGG 655 Score = 150 bits (81), Expect = 4e-35 Identities = 99/107 (93%), Gaps = 4/107 (4%) Strand=Plus/Plus Query 712 AGGAAACATCAGGGATGAACGTCTCAATAGAATGTTTCAGACCCCAC--A--TGCTGTCC 767 |||||||||||||||||||||||||||| |||||| ||||||||||| | ||||| || Sbjct 446 AGGAAACATCAGGGATGAACGTCTCAATTGAATGTCTCAGACCCCACCCACATGCTGCCC 505 Query 768 AATGGATGAGGCCTGAAGTTCAAGAAGGATGTGATGTTTCTGACTGG 814 ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 506 AATGGATGAGGCCTGAAGTTCAAGAAGGAGGTGATGTTTCTGACTGG 552 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 97053944260 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5