BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54260.1
Length=2574
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495511 jgi|Araly1|495511|fgenesh2_kg.8__1327__AT5G54260.1 2571 0.0
Ahg357625 jgi|Araly1|357625|fgenesh1_pg.C_scaffold_8001412 490 2e-137
> Ahg495511 jgi|Araly1|495511|fgenesh2_kg.8__1327__AT5G54260.1
Length=2447
Score = 2571 bits (1392), Expect = 0.0
Identities = 1480/1524 (97%), Gaps = 0/1524 (0%)
Strand=Plus/Plus
Query 144 TTACTGAGCTGCAAACACTTGGCATCATGTCTAGGGAGGATTTTAGTGATACACTTCGAG 203
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2 TTACTGAGCTGCAAACACTTGCCATCATGTCTAGGGAGGATTTTAGTGATACACTTCGAG 61
Query 204 TACTTGTTGCAACTGATTGCCACTTGGGCTACATGGAGAAGGATGAAATTAGGCGGCATG 263
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 62 TACTTGTTGCAACTGATTGCCACTTGGGTTACATGGAGAAGGATGAAATAAGGCGGCATG 121
Query 264 ATTCATTTAAGGCTTTCGAAGAGATATGTTCTATAGCTGAGGAGAAACAGGTGGACTTCT 323
|||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 122 ATTCGTTTAAGGCTTTTGAAGAGATATGTTCTATAGCGGAGGAAAAACAGGTGGACTTCT 181
Query 324 TACTCCTCGGAGGTGATCTTTTTCATGAGAATAAACCCTCTAGAACTACGTTAGTTAAAG 383
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 182 TACTCCTTGGAGGTGATCTTTTTCATGAGAATAAACCCTCTAGAACTACGCTAGTTAAAG 241
Query 384 CCATTGAAATTCTTCGTCGCCACTGTCTGAATGATAAACCAGTGCAGTTTCAAGTAGTCA 443
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 242 CCATTGAAATTCTTCGCCGCCACTGTCTTAATGATAAACCAGTGCAGTTTCAAGTAGTCA 301
Query 444 GCGACCAGACAGTAAATTTTCAGAATGCGTTTGGTCAAGTCAATTACGAGGATCCACACT 503
|||||||||| ||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 302 GCGACCAGACTGTAAATTTTCAAAATGCGTTTGGTCATGTAAATTACGAGGATCCACACT 361
Query 504 TCAATGTAGGCTTGCCCGTGTTCAGTATTCATGGAAACCATGATGATCCAGCCGGAGTGG 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TCAATGTAGGCTTGCCCGTGTTCAGTATTCATGGAAACCATGATGATCCAGCCGGAGTGG 421
Query 564 ACAATCTTTCTGCAATTGATATTCTTTCCGCATGCAACCTTGTGAACTATTTTGGAAAGA 623
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 ACAACCTTTCTGCAATTGATATTCTTTCCGCATGCAACCTTGTGAACTATTTTGGAAAGA 481
Query 624 TGGTTCTTGGTGGTTCTGGTGTTGGCCAGATTACTCTCTACCCTATACTTATGAAGAAGG 683
|||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||
Sbjct 482 TGGTTCTTGGTGGTTCAGGTGTTGGCCAGATTTCCCTCTACCCTATACTTATGAAGAAGG 541
Query 684 GCTCAACAACCGTGGCTCTCTATGGTTTAGGAAACATCAGGGATGAACGTCTCAATAGAA 743
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 542 GTTCAACAACCGTGGCTCTCTATGGTTTAGGAAACATCAGGGATGAACGTCTTAATAGAA 601
Query 744 TGTTTCAGACCCCACATGCTGTCCAATGGATGAGGCCTGAAGTTCAAGAAGGATGTGATG 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TGTTTCAGACCCCACATGCTGTCCAATGGATGAGGCCTGAAGTTCAAGAAGGATGTGATG 661
Query 804 TTTCTGACTGGTTCAACATTCTGGTGCTTCATCAAAATAGGGTGAAATCAAACCCCAAAA 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 TTTCTGACTGGTTCAACATTCTGGTGCTTCATCAAAATAGGGTGAAATCAAACCCCAAAA 721
Query 864 ATGCAATAAGTGAGCACTTTCTTCCACGTTTCCTCGACTTCATTGTGTGGGGCCATGAGC 923
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 722 ATGCAATAAGTGAGCACTTTCTTCCACGGTTCCTCGACTTCATTGTGTGGGGCCATGAGC 781
Query 924 ATGAATGCCTAATCGACCCCCAGGAGGTATCTGGAATGGGCTTCCACATCACACAACCAG 983
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 782 ATGAATGCCTTATCGACCCCCAGGAGGTATCTGGGATGGGCTTCCACATCACACAACCAG 841
Query 984 GATCTTCTGTGGCAACATCACTTATTGATGGGGAATCGAAGCCAAAACATGTTCTTCTCT 1043
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 842 GATCTTCTGTGGCAACATCACTTATTGATGGGGAATCAAAGCCAAAACATGTTCTTCTCT 901
Query 1044 TAGAAATCAAGGGAAATCAATATCGTCCTACGAAGATACCTTTGACATCTGTGAGGCCTT 1103
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 902 TAGAAATCAAGGGAAATCAATATCGTCCTACGAAGATACCTTTGACATCTGCGAGGCCTT 961
Query 1104 TTGAGTATACAGAGATTGTTTTAAAGGATGAAAGTGATATTGATCCCAATGATCAAAACT 1163
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 962 TCGAGTATACAGAGATTGTTTTAAAGGATGAAGGTGATATTGATCCCAATGATCAAAACT 1021
Query 1164 CAATTCTGGAACACTTGGATAAAGTGGTCAGAAATCTAATAGAGAAAGCTAGCAAAAAAG 1223
|||| || || |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1022 CAATCCTCGAGCACTTGGATAAAGTGGTCAGAAATCTAATAGAGAAAGCCAGCAAAAATG 1081
Query 1224 CTGTTAACAGATCAGAGATCAAACTCCCATTGGTTCGAATCAAGGTAGATTATTCTGGAT 1283
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||
Sbjct 1082 CTGTTAACAGATCAGAGATCAAGCTCCCGTTGGTTCGAATCAAGGTAGATTACTCAGGAT 1141
Query 1284 TTATGACGATAAATCCTCAAAGATTTGGACAGAAATATGTGGGAAAGGTTGCAAATCCCC 1343
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1142 TTATGACGATAAATCCTCAAAGGTTTGGACAGAAATATGTGGGAAAGGTTGCAAATCCCC 1201
Query 1344 AGGACATTTTGATATTTTCCAAGGCTTCTAAGAAGGGTCGGAGCGAAGCCAACATCGATG 1403
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 AGGACATTTTAATATTTTCCAAGGCTTCTAAGAAGGGTCGGAGCGAAGCCAACATCGATG 1261
Query 1404 ATTCTGAGCGGCTTCGTCCAGAAGAACTGAACCAGCAGAATATAGAAGCTTTAGTAGCTG 1463
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1262 ATTCTGAGCGGCTTCGTCCAGAGGAACTGAACCAGCAGAATATAGAAGCTTTAGTAGCTG 1321
Query 1464 AAAGCAACCTGAAAATGGAGATCCTTCCAGTTAACGATCTGGATGTTGCTCTTCACAATT 1523
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1322 AAAGCAACCTGAAAATGGAGATCCTGCCAGTTAACGATCTGGATGTTGCTCTTCACAATT 1381
Query 1524 TTGTGAACAAGGATGATAAACTAGCCTTCTACTCATGCGTTCAGTACAATCTTCAAGAGA 1583
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1382 TTGTGAACAAGGATGATAAACTAGCTTTCTACTCATGCGTTCAGTACAATCTTCAAGAGA 1441
Query 1584 CTCGTGGTAAACTTGCAAAGGATTCAGATGCCAAGAAATTTGAGGAAGATGACTTGATTC 1643
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1442 CTCGTGGTAAACTTGCAAAGGATTCAGTTGCCCAGAAATTTGAGGAAGATGACTTGATTC 1501
Query 1644 TTAAAGTGGGAGAGTGCTTAGAGG 1667
||||||||||||||||||||||||
Sbjct 1502 TTAAAGTGGGAGAGTGCTTAGAGG 1525
Score = 1275 bits (690), Expect = 0.0
Identities = 843/911 (93%), Gaps = 34/911 (4%)
Strand=Plus/Plus
Query 1667 GAACGCTTGAAAGATAGGTCCACTCGACCCACTGGTTCCTCACAGTTTTTATCCACTGGA 1726
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1564 GAACGTTTGAAAGATAGGTCCACTCGACCCACTGGTTCCTCGCAGTTTTTATCCACAGGA 1623
Query 1727 TTGACTTCAGAGAATTTGAC-AAAAGGAAGCAGTGGCATCGCGAATGCTTCGTTCAGTGA 1785
||||| |||||||||||||| |||| ||||||||||||||||| ||||||||||||||||
Sbjct 1624 TTGACATCAGAGAATTTGACGAAAA-GAAGCAGTGGCATCGCGGATGCTTCGTTCAGTGA 1682
Query 1786 TGATGAAGACACAACTCAGATGTCTGGTTTAGCT-CCTCCCACTAGAGGACGAAGAGGTT 1844
|||||||||||| ||||||||||||||||||| | ||| ||||||||||||| |||||||
Sbjct 1683 TGATGAAGACACGACTCAGATGTCTGGTTTAG-TGCCTGCCACTAGAGGACGGAGAGGTT 1741
Query 1845 CATCCACTGCTAATACAACTCGTGGTAGAGCTAAAGCCCCAACCAGAGGACGAGGCCGTG 1904
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1742 CATCCACTGCTAATACATCTCGTGGTAGAGCTAAAGCCCCAACCAGAGGAAGAGGCCGTG 1801
Query 1905 GTAAGGCCTCAAGTGCGATGAAGCAAACCACTCTTGATAGTTCTCTTGGTTTCCGCCAGT 1964
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1802 GTAAGGCCTCAAGTGCGATGAAGCAAACCACTCTTGATGGTTCTCTTGGTTTTCGCCAGT 1861
Query 1965 CTCAAAGATCTGCTTCGGCTGCTGCTTCAGCTGCCTTCAAAAGTGCTTCCACCATTGGAG 2024
|||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||| |
Sbjct 1862 CTCAAAGATCTGCTTCAGCTGCTGCTTCAGCTTCCTTCAAAAATGCTTCCACCATTGGTG 1921
Query 2025 AAGATGATGTAGATTCTCCTTCAAGCGAAGAAGTC-GAGCCTGAAGATTTTAACAAACCT 2083
|||||||||||||||||||||||||||| |||| | |||||||||||||||| ||||| |
Sbjct 1922 AAGATGATGTAGATTCTCCTTCAAGCGAGGAAG-CAGAGCCTGAAGATTTTACCAAACTT 1980
Query 2084 GACAGCAGTTCGGAGGACGATGAGAGCACTAAAGGCAAAGGACGTAAAAGACCAGCTACT 2143
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1981 GACAGCACTTCGGAGGACGATGAGAGCACTAAAGGCAAAGGACGTAAAAGACCAGCTACT 2040
Query 2144 ACTAAGAGAGGCAGAGGTAGAGGTTCTGGGACTTCAAAACGTGGTAGAAAAAACGAAAGC 2203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2041 ACTAAGAGAGGCAGAGGTAGAGGTTCTGGGACTTCAAAACGTGGTAGAAAAAACGAAAGC 2100
Query 2204 TCTTCTTCACTTAATAGGCTACTCAGTAGCAAAGACGATGACGAGGACGAAGATGATGAA 2263
|||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 2101 TCTTCTTCACTTCATAGGCTACTCAGTAGCAAAGACAATGACGATGACGAAGATGATGAA 2160
Query 2264 GACAGAGAAAAGAAGCTTAACAAATCTCAGCCTCGGGTTACAAGGAACTATGGAGCTCTA 2323
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2161 GACATAGAAAAGAAGCTTAACAAATCTCAGCCTCGGGTTACAAGGAACTATGGAGCTCTA 2220
Query 2324 AGAAGATAAATACATATCAAACCCCAATCTCTGACATCACAACGAAGCTTCATTTTTCTG 2383
||||||||||| | || | | || ||| || |||||||||||||||||
Sbjct 2221 AGAAGATAAAT-C----CA--C---A-TC----ACA--AC---GAAGCTTCATTTTTCTG 2260
Query 2384 TTATTTTCTAGCGACCTCTCAAGCGGAACAACTTCTGAAGAAGAGAAATTAGTACTAACA 2443
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 2261 TTATTTTCTAGCGACCTCTCAAGCGAAACAACTTCTGAAGAAGAGAAATTAGT-CTAACA 2319
Query 2444 AGAGTTCTGTGAGATGATGTACAGAGAATTTTGTAGTGtt-tttt-ttt-CTTGCTCTTT 2500
|||||| | |||| || | ||||||||||| |||||||| |||| ||| ||||||||||
Sbjct 2320 AGAGTTTTTTGAGCTG-T--ACAGAGAATTTCGTAGTGTTCTTTTATTTTCTTGCTCTTT 2376
Query 2501 TTAAGGTTACGTTGTTGATGAATGAGGCAATATGATTAA-CGTCAGTAAGAAGTCTAAAA 2559
|||| ||| |||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 2377 TTAAAGTTTTGTTGTTGATGAATGCGGCAATATGATTACTCGTCAGTAAGAAGTCTAAAA 2436
Query 2560 CTGTAGTAACC 2570
|||||||||||
Sbjct 2437 CTGTAGTAACC 2447
> Ahg357625 jgi|Araly1|357625|fgenesh1_pg.C_scaffold_8001412
Length=663
Score = 490 bits (265), Expect = 2e-137
Identities = 311/333 (93%), Gaps = 3/333 (1%)
Strand=Plus/Plus
Query 236 ATGGAGAAGGATGAAATTAGGCGGCATGATTCATTTAAGGCTTTCGAAGAGATATGTTCT 295
||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||
Sbjct 1 ATGGAGAAGGATGAAATAAGGCGGCATGATTCATTTAAGGCTTTTAAAGAGATATGCTCT 60
Query 296 ATAGCTGAGGAGAAACAGGTGGACTTCTTACTCCTCGGAGGTGATCTTTTTCATGAGAAT 355
||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 61 ATAGCGGAGGAGAAACAGGTGAACTTCTTACTCCTCGGAGGTGATATTTTTCATGAGAAT 120
Query 356 AAACCCTCTAGAACTACGTTAGTTAAAGCCATTGAAATTCTTCGTCGCCACTGTCTGAA- 414
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 AAACCCTCTAGAACTACGCTAGTTAAAGCCATTGAAATTCTTCGTCGCCACTGTCTTAAC 180
Query 415 TGATAAACCAGTGCAGTTTCAAGTAGTCAGCGACCAGACAGTAAATTTTCAGAATGCGTT 474
| ||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 181 T-ATAAACCAGTGCATTTTCAAGTTGTCAGCGACCAGACTGTAAATTTTCAAAATGCGTT 239
Query 475 TGGTCAAGTCAATTACGAGGATCCACACTTCAATGTAGGCTTGCCCGTGTTCAGTATTCA 534
|||||| || || ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 240 TGGTCATGTAAACCACGAGGATCCACACTTCAATGTAGGTTTGCCCGTGTTCAGTATTCA 299
Query 535 TGGAAACCATGATGATCCAGCCGGAGTGG-ACA 566
|||||||||||||||||||||| |||||| |||
Sbjct 300 TGGAAACCATGATGATCCAGCCAGAGTGGTACA 332
Score = 156 bits (84), Expect = 9e-37
Identities = 98/105 (93%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 843 GGGTGAAATCAAACCCCAAAAATGCAATAAGTGAGCACTTTCTTCCACGTTTCCTCGACT 902
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 551 GGGTGAAATCAAAACCCAAAAATGCAATAAGTGAGCACTTTCTTCCACGGTTCCTTGACT 610
Query 903 TCATTGTGTGGGGCCATGAGCATGAATGCCTAATCGACCCCCAGG 947
||||||||| ||||||||||||||||||||| || |||| |||||
Sbjct 611 TCATTGTGTCGGGCCATGAGCATGAATGCCTTATTGACCGCCAGG 655
Score = 150 bits (81), Expect = 4e-35
Identities = 99/107 (93%), Gaps = 4/107 (4%)
Strand=Plus/Plus
Query 712 AGGAAACATCAGGGATGAACGTCTCAATAGAATGTTTCAGACCCCAC--A--TGCTGTCC 767
|||||||||||||||||||||||||||| |||||| ||||||||||| | ||||| ||
Sbjct 446 AGGAAACATCAGGGATGAACGTCTCAATTGAATGTCTCAGACCCCACCCACATGCTGCCC 505
Query 768 AATGGATGAGGCCTGAAGTTCAAGAAGGATGTGATGTTTCTGACTGG 814
||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 506 AATGGATGAGGCCTGAAGTTCAAGAAGGAGGTGATGTTTCTGACTGG 552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97053944260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5