BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54270.1
Length=1134
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495512 jgi|Araly1|495512|fgenesh2_kg.8__1328__AT5G54270.1 1932 0.0
Ahg473203 jgi|Araly1|473203|fgenesh2_kg.1__3157__AT1G29910.1 152 5e-36
Ahg473204 jgi|Araly1|473204|fgenesh2_kg.1__3158__AT1G29930.1 139 4e-32
> Ahg495512 jgi|Araly1|495512|fgenesh2_kg.8__1328__AT5G54270.1
Length=1133
Score = 1932 bits (1046), Expect = 0.0
Identities = 1106/1135 (97%), Gaps = 3/1135 (0%)
Strand=Plus/Plus
Query 1 ATATCCCATCTCTGATTCTCCCACCTCTCTTCTCATCCACAAAATACTAACATAAAAGTC 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATATCCCATCTCTGATTCTCCAACCTCTCTTCTCATCCACAAAATACTAACATAAAAGTC 60
Query 61 AAAGTCCCTGAGACCAATACTTTCACcaaacagcaaaacaagaagaacaacaacactaag 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 AAAGTCCCTGAGACCAATACTTTCACCAAACAGCAAAAGAAGAAGAACAACAACACTAAG 120
Query 121 caaaaaagaaaagctcaagcCGAGAGAGACAATGGCATCAACATTCACGAGCTCAAGCAG 180
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAAAAAAAAAAATCTCAAGCCGAGAGAGACAATGGCATCAACATTCACGAGCTCAAGCAG 180
Query 181 TGTTCT-TACCCCAACAACATTCCTTGGCCAGACTAAAGCCTCAAGCTTTAACCCCCTTC 239
|||||| | | || ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 TGTTCTGT-CTCCTACAACATTCCTTGGCCAGACTAAAGCCTCAAGCTTTAACCCTCTTC 239
Query 240 GTGATGTTGTCTCTCTCGGATCTCCCAAGTACACTATGGGAAATGATCTTTGGTATGGAC 299
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 240 GTGATGTTGTCTCTCTCGGATCTCCCAAATACACTATGGGAAATGATCTTTGGTATGGAC 299
Query 300 CTGACAGAGTGAAGTACTTAGGACCCTTTTCCGTTCAAACTCCGTCTTACCTCACCGGAG 359
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 300 CAGACAGAGTGAAGTACTTAGGACCCTTTTCCGTCCAAACTCCGTCTTACCTCACCGGAG 359
Query 360 AATTCCCTGGCGATTATGGTTGGGACACCGCCGGTTTATCCGCAGACCCTGAAGCCTTTG 419
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 360 AATTCCCCGGCGATTATGGTTGGGACACCGCCGGTTTATCTGCAGACCCTGAAGCCTTTG 419
Query 420 CCAAAAACAGAGCTCTTGAGGTGATCCATGGGAGATGGGCAATGTTGGGAGCTTTTGGTT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CCAAAAACAGAGCTCTTGAGGTGATCCATGGGAGATGGGCAATGTTGGGAGCTTTTGGTT 479
Query 480 GCATAACCCCTGAAGTTCTTCAAAAGTGGGTCCGTGTGGACTTCAAAGAACCAGTCTGGT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GCATAACCCCTGAAGTTCTTCAAAAGTGGGTCCGTGTGGACTTCAAAGAACCAGTCTGGT 539
Query 540 TCAAAGCCGGTTCACAAATCTTCTCCGAAGGCGGTTTGGACTACTTAGGCAACCCAAACC 599
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCAAGGCCGGTTCACAAATCTTCTCCGAAGGCGGTTTGGACTACTTAGGCAACCCAAACC 599
Query 600 TAGTCCATGCTCAGAGCATTTTAGCCGTCCTTGGCTTCCAAGTCATCCTCATGGGTTTGG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 600 TAGTCCATGCTCAGAGCATTTTAGCCGTCCTTGGCTTCCAAGTCATCCTCATGGGCTTGG 659
Query 660 TTGAAGGTTTCCGCATCAACGGTCTTGATGGTGTTGGCGAAGGCAACGACTTGTACCCCG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTGAAGGTTTCCGCATCAACGGTCTTGATGGTGTTGGCGAAGGCAACGACTTGTACCCCG 719
Query 720 GTGGGCAATACTTTGACCCGTTGGGTCTCGCTGATGATCCAGTTACTTTTGCTGAGCTTA 779
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 720 GTGGACAATACTTTGACCCGTTGGGTCTCGCTGATGATCCAGTTACTTTTGCCGAGCTCA 779
Query 780 AGGTGAAAGAGATCAAGAACGGAAGATTGGCTATGTTCTCTATGTTTGGCTTCTTTGTTC 839
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 780 AGGTGAAAGAGATCAAGAATGGAAGATTGGCTATGTTCTCAATGTTTGGCTTCTTTGTTC 839
Query 840 AAGCCATTGTTACTGGAAAAGGTCCTTTGGAGAATCTCCTTGACCATCTTGACAACCCTG 899
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 840 AAGCCATTGTTACTGGAAAAGGTCCTTTGGAGAATCTCCTTGACCATCTCGACAACCCCG 899
Query 900 TTGCTAACAATGCGTGGGCTTTCGCAACTAAGTTTGCACCTGGAGCTTAAATTTTCAAGT 959
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 900 TTGCTAACAATGCATGGGCTTTCGCAACTAAGTTTGCACCTGGAGCTTAAATTTTTAAGT 959
Query 960 CTTGATGTGATTCTTGTAATGATATGAACATAACCTTTCTTGTTCCTCTCAAATTACAAA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CTTGATGTGATTCTTGTAATGATATGAACATAACCTTTCTTGTTCCTCTCAAATTACAAA 1019
Query 1020 TCTTCTATTTGCTATGCACAGAAGAAGTCTCAAAAATACATGTCTCTCACAGCTAAATCT 1079
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TCT-CTATTTGCTATACACAGAAGAAGTCTCAAAAATACATGTCTCTCACAGCTAAATCT 1078
Query 1080 ACAATGCTCTTAATCTAACATTTTGGGATCGTGATACTAATACAAAGCTAAGTGG 1134
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1079 ACAATGCTCTCAATCTAACATTTTGGGATCGGGATACTAATACAAAGCTAAGTGG 1133
> Ahg473203 jgi|Araly1|473203|fgenesh2_kg.1__3157__AT1G29910.1
Length=1008
Score = 152 bits (82), Expect = 5e-36
Identities = 309/415 (74%), Gaps = 30/415 (7%)
Strand=Plus/Plus
Query 536 TGGTTCAAAGCCGGTTCACAAATCTTCTCCGAAGGCGGTTTGGACTACTTAGGCAACCCA 595
|||||||| ||||||||||| |||||| ||| || || | || ||||| || |||||
Sbjct 443 TGGTTCAAGGCCGGTTCACAGATCTTCAGCGATGGAGGGCTCGATTACTTGGGAAACCCT 502
Query 596 AACCTAGTCCATGCTCAGAGCATTTTAGCCGTCCTT-GGCTTC-CAAGTCATCCTCATGG 653
| | ||||||| ||||||||||| || | || || ||| | ||||| ||| | ||||
Sbjct 503 AGCTTAGTCCACGCTCAGAGCATCTT-GGCG-ATTTGGGCCACTCAAGTTATCTTGATGG 560
Query 654 GTTTGGTTGAAGGTTTCCGCA-TCAAC-GGTCTTGATGG-TGTTGGCGA-AGG-CAACGA 708
| |||||||| | | | | || | || || || |||| || ||| | | ||
Sbjct 561 GAGCCGTTGAAGGCTACAG-AGTC-GCAGGAAATG--GGCCATTGG-GAGAGGCCGAGGA 615
Query 709 CTTG---TACCCCGGTGGGCAATA-CTTTGACCCGTTGGGTCTCGCTGA-TGATCCAGTT 763
|||| ||||||||| || || ||| ||||| |||||| | ||| | || ||||
Sbjct 616 CTTGCTTTACCCCGGT-GG---TAGCTTCGACCCATTGGGTTTGGCT-ACCGACCCAGAG 670
Query 764 ACTTTTGCTGAGCTT-AAGGTGAAAGAGATCAAGAACGGAAGATTGGCTATGTTCTCTAT 822
| || |||||| || |||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 671 GCCTTCGCTGAG-TTGAAGGTGAAGGAGCTCAAGAACGGAAGATTGGCTATGTTCTCTAT 729
Query 823 GTTTGGCTTCTTTGTTCAAGCCATTGTTACTGGAAAAGGTCCTTTGGAGAATCTC-CTTG 881
|||||| ||||| |||||||||||||| ||||| || || || | ||||| || || |
Sbjct 730 GTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGGACCGATAGAGAACCTTGCT-G 788
Query 882 ACCATCTTGACA-ACCCTGTTGCTAACAATGCGTGGGCTTTCGCAACTAAGTTTG 935
||||| ||| | | || ||| | ||||| || ||||| ||||| || || ||||
Sbjct 789 ACCAT-TTGGCCGATCCAGTTACCAACAACGCATGGGCCTTCGCCACCAACTTTG 842
> Ahg473204 jgi|Araly1|473204|fgenesh2_kg.1__3158__AT1G29930.1
Length=1002
Score = 139 bits (75), Expect = 4e-32
Identities = 182/232 (78%), Gaps = 14/232 (6%)
Strand=Plus/Plus
Query 709 CTTGTACCCCGGTGGGCAATA-CTTTGACCCGTTGGGTCTCGCTGA-TGATCCAGTTACT 766
||| ||||||||| || || ||| ||||| |||||| | ||| | || |||| |
Sbjct 631 CTT-TACCCCGGT-GG---TAGCTTCGACCCATTGGGTTTGGCT-ACCGACCCAGAGGCC 684
Query 767 TTTGCTGAGCTT-AAGGTGAAAGAGATCAAGAACGGAAGATTGGCTATGTTCTCTATGTT 825
|| |||||| || |||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 685 TTCGCTGAG-TTGAAGGTGAAGGAGCTCAAGAACGGAAGATTGGCTATGTTCTCTATGTT 743
Query 826 TGGCTTCTTTGTTCAAGCCATTGTTACTGGAAAAGGTCCTTTGGAGAATCTC-CTTGACC 884
||| ||||| |||||||||||||| ||||| || || || | ||||| || || ||||
Sbjct 744 TGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGGACCGATAGAGAACCTTGCT-GACC 802
Query 885 ATCTTGACA-ACCCTGTTGCTAACAATGCGTGGGCTTTCGCAACTAAGTTTG 935
|| ||| | | || ||| | ||||| || ||||| ||||| || || ||||
Sbjct 803 AT-TTGGCCGATCCAGTTACCAACAACGCATGGGCCTTCGCCACCAACTTTG 853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42278314953
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5