BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54280.2
Length=4343
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917116 jgi|Araly1|917116|Al_scaffold_0008_1867 6063 0.0
Ahg492062 jgi|Araly1|492062|fgenesh2_kg.7__1495__AT4G27370.1 1832 0.0
Ahg495512 jgi|Araly1|495512|fgenesh2_kg.8__1328__AT5G54270.1 307 4e-82
> Ahg917116 jgi|Araly1|917116|Al_scaffold_0008_1867
Length=3660
Score = 6063 bits (3283), Expect = 0.0
Identities = 3543/3669 (97%), Gaps = 15/3669 (0%)
Strand=Plus/Plus
Query 464 ATGATGTTATCGGCATCGCCGAACACACTAGCGAAAAGTTCGTTAGAGGAGATGCTTGAG 523
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGATGTTATCGGCATCGCCGAACACACTAGCGAAAAGCTCGTTAGAGGAGATGCTTGAG 60
Query 524 TCTCTTCGTCAGAAAGATGAGTGTGATCGGCCTAAAGATATGCCTCCGGCGCTTCCTTCT 583
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 TCTCTTCGTCAGAAAGATGAGTGTGATCGGCCTAAAGATATGCCACCGGCGCTTCCTTCT 120
Query 584 CGGCCTAATTCAAGAGCTCGTCTTCCTTCTGCTCGTCGTTCGCTTCCGGCCAACTTTAAT 643
||||||||||| |||||||||||||| || ||||||||||| |||||||| || ||||||
Sbjct 121 CGGCCTAATTCTAGAGCTCGTCTTCCGTCGGCTCGTCGTTCACTTCCGGCGAAGTTTAAT 180
Query 644 GTTTCTAGTGTAATGGAAGATCAGAACGGAAGTGTTGTTTCTGTGACGCCTGCGGTGGAA 703
||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 181 GTTAGTAGTGTAATGGAAGATCAGAATGGAAGTGTTGTTTCTGCGACGCCTGCGGTGGAA 240
Query 704 GCTGAATCGGAAAGGAAAGAGGAAGG-GGTGAAGAGGAAAGAGAAGGATTTGGGTGTTAA 762
|||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct 241 GCTGAATCGGAAAGGAAAGAGGAAGGAGG-GAAGAGGAAAGAGAAGGATTTGGGTATTAA 299
Query 763 GAGGAATAGTTTTGGAAGCAAGAAAATGAGGACTGGTCTTAGGTCAGAGTCTCCGTATGC 822
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAGGAATAGTTTTGGAAGTAAGAAAATGAGGACTGGTCTTAGGTCAGAGTCTCCGTATGC 359
Query 823 AGCAGAGAAGGAAGAGGAGGGTGTGAAGATTAGTATC-GCTAAAGTTAGTTTGGTGGAGA 881
||| |||||||||||||| ||||||| |||||||| | |||||||||||| ||||||||
Sbjct 360 AGCTGAGAAGGAAGAGGATGGTGTGATGATTAGTA-CTGCTAAAGTTAGTCCGGTGGAGA 418
Query 882 ACACGGAGGAGCATAATAAGCCTGAGTCTGAGTGGAACAATAACGTTGAGTACTTCATCA 941
| |||||||||||| | || |||||||||||||||||||||||||||||||||||||| |
Sbjct 419 ATACGGAGGAGCAT-A-AA-CCTGAGTCTGAGTGGAACAATAACGTTGAGTACTTCATTA 475
Query 942 AGAAGAAACTTCGAGTTTGGTGTCGGGTATCTAATGGGCAGTGGCAACTGGGGAAGATAC 1001
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 476 AGAAGAAACTTCGAGTTTGGTGTCGGGTATCTAATGGGCTGTGGCAACTGGGGAAGATAC 535
Query 1002 AGTCTACTTCCGCTGATACGTCGCTTGTTATGTTGTCCACTGCAAATGTTGTGAAAGTGT 1061
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 536 AGTCTACTTCTGCTGATACGTCGCTTGTTATGTTGTCCACTGAAAATGTTGTGAAAGTGT 595
Query 1062 CTACTGAAGAGCTTTTTCCTGCAAACCCAGATATATTGGAAGGTGTTGAAGATCTTATAC 1121
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 CTACTGGAGAGCTTTTTCCTGCAAACCCAGATATATTGGAAGGTGTTGAAGATCTTATAC 655
Query 1122 AGCTCAGTTATCTAAATGAACCATCTGTTCTTTATAACCTTCGTGTCAGATATTTGCAAG 1181
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 656 AGCTCAGTTATCTAAATGAACCATCTGTTCTTTATAACCTTCGTGTCAGATATTCGCAAG 715
Query 1182 ACGTGATTTATAGTAAAGCAGGACCTGTATTGATTGCGGTCAATCCATTCAAGAATGTAG 1241
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 716 ACGTGATTTATAGTAAAGCAGGACCAGTATTGATTGCGGTCAATCCATTCAAGAATGTCG 775
Query 1242 AAATTTATGGAAATGATGTTATCTCAGCTTATCAGAAGAAGGTTATGGATGCTCCACATG 1301
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 776 AAATTTATGGAAATGATGTTATCTCAGCTTATCAGAAGAAGGCTGTGGATGCTCCACATG 835
Query 1302 TCTATGCTGTGGCGGATGCAGCTTATGATGAGATGATGAGAGAAGAGAAGAATCAGTCTC 1361
| ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 836 TTTATGCTGTGGCGGATGCCGCTTATGATGAGATGATGAGTGAAGAGAAGAACCAGTCTA 895
Query 1362 TTATAATAAGTGGAGAAAGTGGAGCTGGGAAAACTGAGACTGCAAAATTTGCAATGCAGT 1421
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TTATTATAAGTGGAGAAAGTGGAGCTGGGAAAACTGAGACTGCAAAATTTGCAATGCAGT 955
Query 1422 ACTTGGCAGCTCTCGGTGGAGGTAGCTGTGGAGTAGAGTATGAAATCCTAAAAACAACCT 1481
||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 956 ACTTGGCAGCTCTTGGTGGAGGTAGCTGTGGAGTAGAGTACGAAATCCTAAAGACAACCT 1015
Query 1482 GCATACTCGAAGCTTTTGGAAACGCTAAAACATCAAGAAATGCTAACTCTAGCCGATTTG 1541
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1016 GCATACTCGAAGCTTTTGGGAACGCTAAAACATCAAGGAATGCTAACTCTAGCCGATTTG 1075
Query 1542 GTAAACTCATAGAAATTCATTTTAGTGCAATGGGAAAGATATGTGGAGCCAAACTTGAAA 1601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 GTAAACTCATAGAAATTCATTTTAGTGCAATGGGAAAGATATGTGGAGCCAAACTTGAAA 1135
Query 1602 CTTTTC-TGCTAGAGAAGTCAAGAGTGGTTCAGCTGTTCAATGGCGAAAGATCCTATCAT 1660
| |||| || | || |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1136 C-TTTCTTGTTTGACCAGTCAAGAGTGGTTCAGCTGTTCAATGGCGAAAGATCCTACCAT 1194
Query 1661 ATATTTTATGAGCTGTGTGCAGGTGCTTCACCGATTCTTAAAGAGAGATTGAAGCTTAAA 1720
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1195 ATATTTTATGAGTTGTGTGCAGGTGCTTCGCCGATTCTTAAAGAGAGATTGAAGCTTAAA 1254
Query 1721 ACAGCAAGTGAGTATACCTACCTGAGCCAGAGTGATTGCTTGACCATTGCCGGTGTTGAT 1780
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 ACAGCCAGTGAGTATACGTACCTGAGCCAGAGTGATTGCTTGACCATTGCCGGTGTTGAT 1314
Query 1781 GATGCTCAGAAATTTCACAAACTACTGGAAGCTTTTGACATTGTTCAAATCCCTAAAGAG 1840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 GATGCTCAGAAATTTCACAAACTACTGGAAGCTTTTGACATTGTTCAAATCCCTAAAGAG 1374
Query 1841 CATCAAGAGAGGGCATTTGCATTGCTTGCAGCAGTGTTGTGGCTAGGAAATGTATCTTTT 1900
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1375 CATCAAGAGCGGGCATTTGCATTGCTTGCGGCAGTGTTGTGGCTAGGAAATGTATCTTTC 1434
Query 1901 CGAGTTACTGACAACGAAAATCATGTGGAGGTGGTAGCGGATGAAGCTGTCGCCAATGCC 1960
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 CGAGTTACTGACAATGAAAATCATGTGGAGGTGGTAGCGGATGAAGCTGTCGCCAATGCC 1494
Query 1961 GCTATGTTAATGGGCTGCAACACAGAAGAGCTTATGGTGGTTTTGTCCACCCGTAAACTT 2020
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1495 GCTATGTTAATGGGCTGCAACGCAGAAGAGCTTATGGTGGTTTTGTCCACCCGTAAACTT 1554
Query 2021 CAAGCTGGTACGGATTGTATTGCTAAAAAACTGACATTGCGGCAGGCAACTGACATGAGG 2080
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CAAGCTGGTACAGATTGTATTGCTAAAAAACTGACATTGCGGCAGGCAACTGACATGAGG 1614
Query 2081 GATGGAATAGCAAAATTTATTTATGCAAACCTATTT-GACTGGCTTGTTGAGCAAATAAA 2139
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1615 GATGGAATAGCAAAATTTATTTATGCAAACCT-TTTCGACTGGCTTGTTGAGCAAATAAA 1673
Query 2140 CATTGCATTGGAAGTCGGTAAATCACGTACAGGAAGATCTATAAGCATCCTTGATATATA 2199
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 CATTGCACTGGAAGTTGGTAAATCACGTACAGGAAGATCTATAAGCATCCTTGATATATA 1733
Query 2200 TGGGTTTGAATCATTTAAGAATAACAGCTTTGAACAATTCTGTATAAACTACGCAAATGA 2259
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1734 TGGGTTTGAATCATTTAAGAATAACAGCTTTGAACAATTCTGTATAAACTATGCAAATGA 1793
Query 2260 AAGATTGCAGCAACACTTCAACCGGCATTTATTTAAACTTGAACAAGAGGAATATGAAGA 2319
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1794 AAGATTGCAGCAACACTTCAACCGGCATTTATTCAAACTTGAACAAGAGGAATATGAAGA 1853
Query 2320 AGATGGAATTGATTGGACTAAGGTCGAATTTGTAGACAATCAAGAGTGCTTAGATCTAAT 2379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1854 AGATGGAATTGATTGGACTAAGGTCGAATTTGTAGACAATCAAGAGTGCTTAGATCTAAT 1913
Query 2380 TGAGAAGAAACCAATTGGTTTGTTGTCTCTACTAGACGAGGAATCAAATTTTCCAAAAGC 2439
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1914 TGAGAAGAAACCGATTGGTTTGTTGTCTCTACTAGACGAGGAATCAAATTTTCCAAAAGC 1973
Query 2440 AACTGATTTGACCTTTGCCAACAAGCTCAAGCAACATTTGAAGACCAACTCTTGCTTCAA 2499
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1974 AACTGATTTGACCTTTGCCAACAAGCTCAAGCAACACTTGAAGACCAACTCTTGCTTCAA 2033
Query 2500 AGGAGAGAGAGGTCGAGCCTTCAGAGTTAATCATTATGCTGGAGAGGTTCTCTATGATAC 2559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2034 AGGAGAGAGAGGTCGAGCCTTCAGAGTTAATCATTATGCTGGAGAGGTTCTCTATGATAC 2093
Query 2560 AAATGGCTTTTTGGAGAAGAACAGGGATCCGTTACCTGCTGATCTTATCAATCTTTTATC 2619
|||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2094 AAATGGGTTTTTGGACAAGAACAGGGATCCGTTGCCTGCTGATCTTATCAATCTTTTATC 2153
Query 2620 ATCATGCGACTGCCAGTTGCTGAAATTGTTTTCAACTAAAATGCGTGGCAAATCGCAAAA 2679
|||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||| ||
Sbjct 2154 ATCATGCGACTGCCAGCTGCTCAAATTGTTTTCAACTAAAATGCGTGACAAATCGCAGAA 2213
Query 2680 GCCACTTATGTTATCGGACTCCACGAACCAAACTGTTGGAACAAAGTTCAAGGGTCAACT 2739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2214 GCCACTTATGTTATCGGACTCCACGAACCAAACTGTTGGAACAAAGTTCAAGGGTCAACT 2273
Query 2740 TTTCAAATTGATGAACAAGTTAGAGAACACAAGTCCTCACTTCATTCGATGCATAAAGCC 2799
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2274 TTTCAAACTGATGAACAAGTTAGAGAACACAAGTCCTCACTTCATTCGATGCATAAAGCC 2333
Query 2800 GAATTCAAAGCAGCTTCCCAGAGTTTATGAAGAGGATCTTGTCTTACAACAGCTTAGATG 2859
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2334 GAATTCGAAGCAGCTTCCCAGAGTTTATGAAGAGGATCTTGTCTTACAACAGCTTAGATG 2393
Query 2860 TTGTGGCGTGTTGGAAGTTGTTAGAATATCAAGATCTGGATATCCTACTCGTTTGACACA 2919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2394 TTGTGGCGTGTTGGAAGTTGTTAGAATATCAAGATCTGGATATCCTACTCGTTTGACACA 2453
Query 2920 TCAAGAGTTTGCAGGAAGATATGGTTTCTTATTGTCAGACAAAAAGGTCGCTCAGGATCC 2979
|||||||||||| ||||||||||| ||| ||| |||||||||||||||| ||||||||||
Sbjct 2454 TCAAGAGTTTGCGGGAAGATATGGGTTCCTATCGTCAGACAAAAAGGTCTCTCAGGATCC 2513
Query 2980 TCTGAGCGTATCAATTGCTGTTCTGAAACAATATGACGTTCATCCTGAAATGTATCAAGT 3039
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2514 TCTGAGTGTATCAATTGCTGTTCTGAAACAATACGACGTTCATCCTGAAATGTATCAAGT 2573
Query 3040 GGGTTACACAAAATTGTACCTCCGAACTGGACAAATTGGGATCTTTGAGGATCGGAGGAA 3099
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 2574 GGGTTACACAAAATTGTATCTCCGAACTGGACAAATTGGTATCTTTGAGGATCGGAGAAA 2633
Query 3100 AAAGGTTCTTCAAGGCATAGTGGGCTTACAAAAGCATTTCCGTGGTCACTTGTCTCGTGC 3159
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2634 AAAAGTTCTTCAAGGCATAGTGGGCTTACAAAAGCATTTCCGTGGTCACTTGTCTCGTGC 2693
Query 3160 ATACTTCCAAAATATGCGGAAAGTAACATTGGTTCTTCAGTCATATATACGAGGTGAAAA 3219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2694 ATACTTCCAAAATATGCGGAAAGTAACATTGGTTCTTCAGTCATATATACGAGGTGAAAA 2753
Query 3220 TGCCCGAAGATTGTTTGACACTGAAGCAAAATTCCATGCGGATTCTGTTTCTGAAGCAAG 3279
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2754 TGCCCGAAGAATGTTTGACACTGAAGCAAAAATCCATGCGGATTCTGTTTCTGAAGCAAG 2813
Query 3280 CACAGATGAGTTGAGTGCAGTCATACACTTGCAATCTGCGGTTCGTGGATGGTTGGCTCG 3339
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2814 CACAGATGAGTTGACTGCAATCATACACTTGCAATCTGCGGTTCGTGGATGGTTGGCTCG 2873
Query 3340 CAAACATTTCAATAGTATGCAAAGACAAAAAGAACTACGCAATGTGGCGACAAAATCAAA 3399
|||| ||||||| ||||||||||||| |||||| ||| ||||||| |||||||||||||
Sbjct 2874 TAAACGTTTCAATGGTATGCAAAGACAGAAAGAATTACTCAATGTGACGACAAAATCAAA 2933
Query 3400 GAGGAAAGCTGGCAGGAGGATTTCAGAAGACAAGGATATTCCTCTGGAGCAG-CCACAAG 3458
||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 2934 GAGGAAAGCTGGCAGGAGGATTTCAGAAGACAAGGATATTCCTTTGGAGCAGTCC-CAAG 2992
Query 3459 TTCAACCAA-CATCTATGTCTGATCTCCAGAAACGGATTTTGAAATCTGAAGCAGCTTTA 3517
||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2993 TTCAA-CAACCATCTATGTCTGATCTCCAGAAACGGGTTTTGAAATCTGAAGCAGCTTTA 3051
Query 3518 TCGCAGAAGGAAGAAGAAAACACAGCTTTGAGAGAGCAGTTGAGGCAATTTGAGGAGAGA 3577
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3052 GCGCAGAAGGAAGAAGAAAACACAGCTTTGAGAGAGCAGTTGAGGCAATTTGAGGAGAGA 3111
Query 3578 TGGTCAGAGTATGATATAAAGATGAAGTCAATGGAGGAAACATGGCAAAAGCAAATGTCA 3637
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3112 TGGTCAGAGTATGATATAAAGATGAAGTCAATGGAGGAAACATGGCAAAAGCAAATGTCG 3171
Query 3638 TCATTGCAGATGAGTCTTGCCGCCGCTAGAAAGAGTCTAGCTGCAGAGAGCATTACGGGT 3697
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3172 TCATTGCAGATGAGTCTTGCCGCAGCTAGAAAGAGTCTAGCTGCAGAGAGCATTACGGGT 3231
Query 3698 CAAGCAGGAGGAAGACAAGACACATCGATATCACCTTTCGGTTATGACTCAGAGGACACG 3757
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3232 CAAGCAGGAGGAAGACAAGACACATCGATATCACCTTTCGGTTATGACTCAGAGGACACA 3291
Query 3758 ATGTCTACTGGAACTCCGGGAGTAAGAACTCCTACTAATAAGTTCACAAACGGAAACACT 3817
||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 3292 ATGTCTACTGGGACTCCGGGAGTAAGAACTCCTACTACTAAGTTCACTAACGGAAACACT 3351
Query 3818 CCTGAACTCAGAATCAGAGAGCTCAACGGAAGTTTGAATGCGGTTAATCATCTTGCAAGA 3877
||||| ||||||||||||||||| |||||||| |||||||||||||||||||| || |||
Sbjct 3352 CCTGAGCTCAGAATCAGAGAGCTTAACGGAAGCTTGAATGCGGTTAATCATCTCGCGAGA 3411
Query 3878 GAGTTTGACCAAAGGAGACTCAATTTCGATGAAGATGCAAGAGCTATTGTGGAGGTGAAG 3937
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3412 GAGTTTGACCAAAGGAGACTCAATTTCGATGAAGATGCAAGAGCTATCGTGGAGGTGAAG 3471
Query 3938 CTCGGACCTCAGGCAACTCCAAACGGGCAGCAACAGCAACATCCAGAAGATGAATTTAGG 3997
|| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 3472 CTTGGACCGCAGGCAACTCCAAACGGGCAGCAACAGCAGCATCCAGAAGATGAATTTAGG 3531
Query 3998 AGACTGAAGCTAAGATTTGAGACATGGAAGAAAGATTACAAAGCTAGATTAAGAGATACT 4057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3532 AGACTGAAGCTAAGATTTGAGACATGGAAGAAAGATTACAAAGCTAGATTAAGAGATACT 3591
Query 4058 AAAGCAAGACTCCATAGAGTAGATGGTGATAAAGGTCGTCACCGGAAATGGTGGGGAAAA 4117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3592 AAAGCAAGACTCCATAGAGTAGATGGTGATAAAGGTCGTCACCGGAAATGGTGGGGAAAA 3651
Query 4118 AGAGGCTAG 4126
|||||||||
Sbjct 3652 AGAGGCTAG 3660
> Ahg492062 jgi|Araly1|492062|fgenesh2_kg.7__1495__AT4G27370.1
Length=3468
Score = 1832 bits (992), Expect = 0.0
Identities = 1924/2364 (81%), Gaps = 104/2364 (4%)
Strand=Plus/Plus
Query 1370 AGTGGAGAAAGTGGAGCTGGGAAAACTGAGACTGCAAAATTTGCAATGCAGTACTTGGCA 1429
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
Sbjct 826 AGTGGAGAAAGTGGAGCTGGGAAAACTGAGACAGCAAAATATGCAATGCAGTACTTGGAA 885
Query 1430 GCTCTCGGTGGAGGTAGCTGTGGAGTAGAGTATGAAATCCTAAAAACAACCTGCATACTC 1489
||||| ||||||||||||| ||| || || ||||||||||||| |||| || || ||
Sbjct 886 GCTCTTGGTGGAGGTAGCTTTGGGGTGGAAAATGAAATCCTAAAGACAAATTGTATTCTT 945
Query 1490 GAAGCTTTTGGAAACGCTAAAACATCAAGAAATGCTAACTCTAGCCGATTTGGTAAACTC 1549
||||||||||| || ||||||||||||||||||| ||||||||||||||| || |||||
Sbjct 946 GAAGCTTTTGGGAATGCTAAAACATCAAGAAATGATAACTCTAGCCGATTCGGAAAACTG 1005
Query 1550 ATAGAAATTCATTTTAGTGCAATGGGAAAGATATGTGGAGCCAAACTTGAAACTTT-TCT 1608
|| || |||||||||||||||| |||||||||||| ||||| |||||||||||||| |||
Sbjct 1006 ATGGAGATTCATTTTAGTGCAAAGGGAAAGATATGCGGAGCTAAACTTGAAACTTTCTCT 1065
Query 1609 GCTAGAGAAGTCAAGAGTGGTTCAGCTGTTCAATGGCGAAAGATCCTATCATATATTTTA 1668
|| | |||||||||||| |||||||| ||||||||| |||||||| ||||| |||||
Sbjct 1066 T-TAAACCAGTCAAGAGTGGCTCAGCTGTGCAATGGCGAGAGATCCTACCATATCTTTTA 1124
Query 1669 TGAGCTGTGTGCAGGTGCTTCACCGATTCTTAAAGAGAGATTGAAGCTTAAAACAGCAAG 1728
| | |||||||||| |||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1125 TCAATTGTGTGCAGGAGCTTCACCAATTCTTAAAGAGAGATTGAAGCTTAAAGCAGCAAG 1184
Query 1729 TGAGTATACC-T-ACCTGAGCCAGAGTGATTGCTTGACCATTGC-CGGTGTTGATGATGC 1785
||| |||| | | ||| |||||| ||||||| | ||| | || | ||||||||
Sbjct 1185 TGA--ATACGATTATTTGAACCAGAGCAATTGCTTAATCATGGATCGCACT-GATGATGC 1241
Query 1786 TCAGAAATTTCACAAACT-ACTGGAAGCTTTTGACATTGTTCAAATCCCTAAAGAGCATC 1844
|||||||||||||||| | | |||||||||| ||||||||||||| ||| |||| | |
Sbjct 1242 TCAGAAATTTCACAAATTGA-TGGAAGCTTTCAACATTGTTCAAATTCCTCAAGAATACC 1300
Query 1845 AAGAGAGG-GCATTTGCATTGCTTGCAGCAGTGTTGTGGCTAGGAAATGTATCTTTTCGA 1903
|||| | | | ||||||| |||||||||| ||||| ||||||||||||||||||||| |
Sbjct 1301 AAGA-ACGTGTATTTGCACTGCTTGCAGCTGTGTTATGGCTAGGAAATGTATCTTTTAAA 1359
Query 1904 GTTACTGACAACGAAAATCATGTGGAGGTGGTAGCGGATGAAGCTGTCGCCAATGCCGCT 1963
|| |||||||| ||||| ||||| || |||||||| ||||||||||| | |||| |||
Sbjct 1360 GTGACTGACAATGAAAACCATGTCGAAGTGGTAGCAGATGAAGCTGTAACTAATGTAGCT 1419
Query 1964 ATGTTAATGGGCTGCAACACAGAAGAGCTTATGGTGGTTTTGTCCACCCGTAAACTTCAA 2023
| |||||||||||||||| || |||||||||||||||||||||| || | || || |||
Sbjct 1420 ACGTTAATGGGCTGCAACTCAAAAGAGCTTATGGTGGTTTTGTCTACATGCAAGCTCCAA 1479
Query 2024 GCTGGTACG-GATTGTATTGCTAAAAAACTGACATTGCGGCAGGCAACTGACATGAGGGA 2082
||||||| | ||||| |||||||||| ||||||| |||| ||||||||||| ||||||||
Sbjct 1480 GCTGGTA-GAGATTGCATTGCTAAAAGACTGACACTGCGACAGGCAACTGATATGAGGGA 1538
Query 2083 TGGAATAGC-AAAATTTATTTATGCAAACCTATTTGACTGGCTTGTTGAGCAAATAAACA 2141
| |||| ||||| || ||||| | |||||| |||||||||||||| |||||||||
Sbjct 1539 TTCCCTAGCGAAAATC-ATCTATGCGAGCCTATTCAACTGGCTTGTTGAGAAAATAAACA 1597
Query 2142 TTGCATTGGAAGTCGGTAAATCACGTACAGGAAGATCTATAAGCATCCTTGATATATATG 2201
|| || ||||||| ||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1598 TTTCACTGGAAGTTGGTAACTCACGTACAGGAAGATCTATTAGCATCCTTGATATATATG 1657
Query 2202 GGTTTGAATCATTTAAGAATAACAGCTTT-GAACAATTCTGTATAAACTACGCAAATGAA 2260
||||||| |||||| ||||||| || ||| |||||||| || |||||||| |||||||||
Sbjct 1658 GGTTTGAGTCATTTGAGAATAATAG-TTTCGAACAATTTTGCATAAACTATGCAAATGAA 1716
Query 2261 AGATTGCAGCAACACTTCAACCGGCATTTATTTAAACTTGAACAAGAGGAATATGAAGAA 2320
||| |||||||||| |||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1717 AGACTGCAGCAACATTTCAACCGTCATCTATTTAAACTTGAACAAGAGGAATATGAAGGG 1776
Query 2321 GATGGAATTGATTGGACTAAGGTCGAATTTGTAGACAATCAAGAGTGCTTAGATCTAATT 2380
||||||||||||||||||||||||||||| ||||||||||||||| ||| |||| |||
Sbjct 1777 GATGGAATTGATTGGACTAAGGTCGAATTCAAAGACAATCAAGAGTGTTTAAATCTGATT 1836
Query 2381 GAGAAGAAACCAATTGGTTTGTTGTCTCTACTAGACGAGGAATCAAATTTTCCAAAAGCA 2440
||||||||||| ||||||||| | || ||| |||| |||||||||||||||||||| ||
Sbjct 1837 GAGAAGAAACCCATTGGTTTGGTATCGCTATTAGATGAGGAATCAAATTTTCCAAAGGCT 1896
Query 2441 ACTGATTTGACCTTTGCCAACAAGCTCAAGCAACATTTGAA-GACCAACTCTTGCTTCAA 2499
|||||| ||| |||||||||||||||||||| |||||||| | | |||||||| |||||
Sbjct 1897 ACTGATACGACGTTTGCCAACAAGCTCAAGCAGCATTTGAATG-CTAACTCTTGTTTCAA 1955
Query 2500 AGGAGAGAGAGGTCGAGCCTT-CAGAGTTAATCATTATGCTGGAGAGGTTCTCTATGATA 2558
||||||||||||| || || |||| |||| |||||||| ||||||||||||||| |||
Sbjct 1956 GGGAGAGAGAGGTC-AGGGTTTCAGAATTAAGCATTATGCCGGAGAGGTTCTCTATAATA 2014
Query 2559 CAAATGGCTTTTTGGAGAAGAACAGGGATCCGTTACCTGCTGATCTTATC-AATCTTTTA 2617
|||||||||| |||| |||||||| |||||| ||| || |||||||||| || ||||||
Sbjct 2015 CAAATGGCTTCCTGGAAAAGAACAGAGATCCGCTACATGTTGATCTTATCCAA-CTTTTA 2073
Query 2618 TCATCATGCGACTGCCAGTTGCTGAAATTGTTTTCAACTAAAATGCGTGGCAAATCGCAA 2677
||||||||| | || || || |||| ||||||| ||||| |||||| | | | | |
Sbjct 2074 TCATCATGCAAATGTCAATTATTGAACCTGTTTTCTACTAAGATGCGTCACGAGTTTCTA 2133
Query 2678 AAGCCA-CTTATGTTATCGGACTCCACGAACCAAACTGTTGGA--ACAAAGTTCAAGGGT 2734
||||| | | || |||||||||| ||| |||| ||| | | ||||| || |||||
Sbjct 2134 AAGCCGGCA-ACCTTTTCGGACTCCATGAATCAAAGTGT-G-ATTACAAAATTTAAGGGC 2190
Query 2735 CAACTTTTCAAATTGATGAACAAGTTAGA-GAACACAAGTCCTCACTTCATTCGATGCAT 2793
||||||||||| ||||||||||||||||| || ||| | |||||| || |||||||||||
Sbjct 2191 CAACTTTTCAAGTTGATGAACAAGTTAGAAGA-CACCACTCCTCATTTTATTCGATGCAT 2249
Query 2794 AAAGCCGAATTCAAAGCAGCTTCCCAGAGTTTATGAAGAGGATCTTGT-CTTACAACAGC 2852
|||||| |||||||| |||||||| || |||| |||||| ||| ||| || ||||||||
Sbjct 2250 AAAGCCAAATTCAAATCAGCTTCCTGGACTTTACGAAGAGAATCATGTTCT-ACAACAGC 2308
Query 2853 TTAGATGTTGTGGCGTGTTGGAAGTTGTTAGAATATCAAGATCTGGATATCCTACTCGTT 2912
|||||||||||||||| |||||| |||||||||| |||||||| |||||||||||||| |
Sbjct 2309 TTAGATGTTGTGGCGTTTTGGAAATTGTTAGAATTTCAAGATCAGGATATCCTACTCGGT 2368
Query 2913 TGACACATCAAGAGTTTGCAGGAAGATATGGTTTCTTATTGTCAG-ACA-AA-AAGGTCG 2969
|||||||||||||| |||||| ||||||||| | | || || | | ||| || || ||
Sbjct 2369 TGACACATCAAGAGCTTGCAGTAAGATATGGATGCCTACTG-CTGGACACAAGAATCTC- 2426
Query 2970 CTCAGGATCCTCTGAGCGTATCAATTGCTGTTCTGAAACAATATGA-CGTTCATCCTGAA 3028
| ||||| || || ||| ||||| |||| |||||||||||| | | ||| |||||||
Sbjct 2427 C-CAGGAGCCGCTTAGCACATCAAATGCTATTCTGAAACAATGCAATC-TTCCTCCTGAA 2484
Query 3029 ATGTATCAAGTGGGTTACAC-AAAATTGTACCTCCGAACTGGACAAATTGG-GATCTTTG 3086
||||||||||| ||||| || ||||| |||||||||||||||| |||||| | || |||
Sbjct 2485 ATGTATCAAGTTGGTTATACGAAAATA-TACCTCCGAACTGGACTAATTGGCG-TCCTTG 2542
Query 3087 AGGATCGGAGGAAAA-AGGTTCTT-CAAGGCATAGTGGGCTTACAAAAGCA-TTTCCGTG 3143
|||| | || |||| | ||| || | |||||| | || ||||| ||||| |||| |||
Sbjct 2543 AGGAAAGAAG-AAAATATGTT-TTGCGTGGCATACTTGGATTACAGAAGCAATTTC-GTG 2599
Query 3144 GTCA-CTTGTCTCGTGCATACTTCCAAAATATGCGGAAAG-TAACATTGGTTCTTCAGTC 3201
|| | | | |||||| || ||| || |||||| |||| | | || || | ||||||||
Sbjct 2600 GTTATCAGG-CTCGTGAATGCTTTCACAATATGAGGAATGCTG-CAGTGATACTTCAGTC 2657
Query 3202 ATATATACGAGGTGAAAATGCCCGAAGATTGTTTGACACTGAAGCAAAAT--TCCATGCG 3259
|||||| || || ||||||||| | ||| | ||| || | |||| || | ||
Sbjct 2658 ATATATCCGCGGAGAAAATGCCAGGAGAAACT---ACATTGTGGTAAAAGAATC-A-GCT 2712
Query 3260 GATTCTGTTTCTGA-AGCAAGCACAGATGAG-TTGAGTGCAG-TCATACACTTGCAATCT 3316
||| ||||| | ||||| || || ||| |||| ||||| | ||||||||||||| |
Sbjct 2713 -ATT--GTTTCC-ACAGCAATAACTGAAGAGCTTGA-TGCAGCT-ATACACTTGCAATAT 2766
Query 3317 GCGGTTCGTGGATGGTTGGCTCGCAAACATTTCAATAGTATGCAA-AGACA-AAAAGAAC 3374
||| || |||| ||||||| ||||| || |||||||||||| ||| | |||| |||
Sbjct 2767 ATGGTACGCAAATGGCTGGCTCGTAAACACTTAAATAGTATGCAACAGA-AGAAAA-AAC 2824
Query 3375 TACGCAATGTGGCGACAA-AATCAAAGAGGAAAG-CTG-GCAGGAGGATTTCAGAAGACA 3431
|||||||| | || || || | | || ||||| | | |||||| |||| |||||||
Sbjct 2825 CACGCAATGAGAAGA-AACAACCGA-GAAGAAAGTCAACG-AGGAGGGTTTCCGAAGACA 2881
Query 3432 AGG-A-TATTCCTCTGGAGCAGCCACAAGTTCAACCAACA-T-CTATGTCTGATCTCCAG 3487
||| | |||| | | | | | | | ||| | || || ||||||||||
Sbjct 2882 AGGTAGTATTTTT-TCCTG-ATTTATGTGACCCACCTTGTGTTCT-TG-CTGATCTCCA- 2936
Query 3488 AAAC-GGATTTTGAAA-TCTGAAGCAGCTTTA-TCGCAGAAGGAAGAAGAAAACACAGCT 3544
|| | || || |||| || ||||||||| || | |||||||||||| |||||||| ||
Sbjct 2937 AAGCCGGGTTCAGAAAGTC-GAAGCAGCTATAAT-GCAGAAGGAAGATGAAAACACTGCA 2994
Query 3545 TTG-AGAGAGCAGTTG-AGGCAATTTGAGGAGAGATGGTCAGAGTATGATATAAAGA-TG 3601
||| || ||| ||||| | | ||||||||| ||||||| |||| | || | |||| ||
Sbjct 2995 TTGCAG-GAGGAGTTGCAA-CGATTTGAGGAAAGATGGTTAGAGAACGA-AGCAAGAATG 3051
Query 3602 AAGTCAATGGAGGAAACATGGCAAAAGCAAATGTCATCATTGCAGATGAGTCTTGCCGCC 3661
||||||||||||||||||||||||||||| ||||| ||| ||||||||||||| || ||
Sbjct 3052 AAGTCAATGGAGGAAACATGGCAAAAGCATATGTCGTCAATGCAGATGAGTCTCGCAGCT 3111
Query 3662 GC-TAGAAAGAGTCTAGCTGCAGA 3684
|| | | |||| ||| ||| ||||
Sbjct 3112 GCCT-GTAAGATTCTGGCTCCAGA 3134
Score = 379 bits (205), Expect = 8e-104
Identities = 371/448 (83%), Gaps = 23/448 (5%)
Strand=Plus/Plus
Query 909 CTGAGTGGAACAATAACGTTGAGTACTTCATCAAGA-AGAAACTTCGAGTTTGGTGTCGG 967
|||| |||| |||||||| |||||| || ||| ||| |||||||| | ||||||| ||||
Sbjct 320 CTGAATGGATCAATAACGCTGAGTATTTTATC-AGAGAGAAACTTTGTGTTTGGTTTCGG 378
Query 968 GTAT-CTAATGGGCAGTGGCAAC-TGGGGAAGATACAGTCTACTTC-CGCTGAT-ACGTC 1023
|| | ||||||||||||||| || ||||||||||||| |||||||| | |||| | ||
Sbjct 379 GT-TGCTAATGGGCAGTGGC-ACTTGGGGAAGATACATTCTACTTCTAG-TGATGATGT- 434
Query 1024 GCT-TGTTATGTTGTCCACT-GC-A-AATGTTGTGAAAGTGTCTACT-GAAGAGCTTTTT 1078
| | ||||||||| |||||| | | ||||||||||||| || | | || ||| ||||
Sbjct 435 G-TGTGTTATGTTATCCACTAACGACGATGTTGTGAAAGTATC-AATGGAGGAGATTTTC 492
Query 1079 CCTGCAAACCCAGATATATTGGAAGGTGTTGAAGATCTTATACAGCTCAGTTATCTAAAT 1138
||||| |||||||| || |||||||| |||||||| |||| |||||| |||||| | |||
Sbjct 493 CCTGCTAACCCAGAGATTTTGGAAGGAGTTGAAGACCTTACACAGCTTAGTTATTTGAAT 552
Query 1139 GAACCATCTGTTCTTTATAACCTTCGTGTCAGATATTTGCAAGACGTGATTTATAGTAAA 1198
||||||||| ||||||| ||||| || |||||||| | |||||| ||||||||||||||
Sbjct 553 GAACCATCTCTTCTTTACAACCTCCGGGTCAGATACTCGCAAGAATTGATTTATAGTAAA 612
Query 1199 GCAGGACCTGTATTGATTGCGGTCAATCCATTCAAGAATGTAGAAATTTATGGA-AATGA 1257
||||| || || |||||||| || ||||| || |||||||| | || |||||| || ||
Sbjct 613 GCAGGGCCAGTTTTGATTGCAGTAAATCCGTTTAAGAATGTCCAGATCTATGGAGAA-GA 671
Query 1258 TG-TTATCTCAGCTTATCAGAAGAA-GGTTATGGATGCTCCACATGTCTATGCTGTGGCG 1315
| || | ||||||||||||| ||| |||| |||||||||| ||||| ||||| |||||
Sbjct 672 -GTTTCTATCAGCTTATCAGACGAAGGGTT-TGGATGCTCCTCATGTTTATGCAGTGGCA 729
Query 1316 GATGCAGCTTATGATGAGATGATGAGAG 1343
||||||||||||||||||||||||||||
Sbjct 730 GATGCAGCTTATGATGAGATGATGAGAG 757
> Ahg495512 jgi|Araly1|495512|fgenesh2_kg.8__1328__AT5G54270.1
Length=1133
Score = 307 bits (166), Expect = 4e-82
Identities = 175/179 (98%), Gaps = 1/179 (1%)
Strand=Plus/Minus
Query 4164 CCACTTAGCTTTGTATTAGTATCACGATCCCAAAATGTTAGATTAAGAGCATTGTAGATT 4223
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1133 CCACTTAGCTTTGTATTAGTATCCCGATCCCAAAATGTTAGATTGAGAGCATTGTAGATT 1074
Query 4224 TAGCTGTGAGAGACATGTATTTTTGAGACTTCTTCTGTGCATAGCAAATAGAAGATTTGT 4283
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1073 TAGCTGTGAGAGACATGTATTTTTGAGACTTCTTCTGTGTATAGCAAATAG-AGATTTGT 1015
Query 4284 AATTTGAGAGGAACAAGAAAGGTTATGTTCATATCATTACAAGAATCACATCAAGACTT 4342
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 AATTTGAGAGGAACAAGAAAGGTTATGTTCATATCATTACAAGAATCACATCAAGACTT 956
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 164256485068
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5