BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54290.2
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495514 jgi|Araly1|495514|fgenesh2_kg.8__1330__AT5G54290.1 1650 0.0
> Ahg495514 jgi|Araly1|495514|fgenesh2_kg.8__1330__AT5G54290.1
Length=1181
Score = 1650 bits (893), Expect = 0.0
Identities = 1089/1179 (92%), Gaps = 32/1179 (3%)
Strand=Plus/Plus
Query 7 AAGACTGTGAAGCGAGAGGACCGTTAAGACGACGGACGCTTATCTGGAAGGAGAGTCATG 66
|||||||||||||||||| |||||| ||||||||||| ||||||| |||||| ||||
Sbjct 1 AAGACTGTGAAGCGAGAGAACCGTT-AGACGACGGACACTTATCT----GGAGAGCCATG 55
Query 67 AATCTGAGTGTGAACCGATGCATCACCGGTGGTTTCGTCGGTGGATTCTCTAGCTGCAGA 126
||||| ||||||||||||||||||| | |||||||||||| |||||||||
Sbjct 56 AATCTAAGTGTGAACCGATGCATCA----------C--CGGTGGATTCTCGAGCTGCAGA 103
Query 127 CTCAATCATGGTAAGAAAAGGTGGGTTCGTGCTGGCAAGCACTGTGAGCTTG-AGAGGGA 185
|||||||| | ||||||| ||||||||||||| |||| | ||||||| || |||| ||
Sbjct 104 CTCAATCA-AG--AGAAAAGATGGGTTCGTGCTGCCAAGAATTGTGAGC-TGCAGAGAGA 159
Query 186 GAGAAGTTTAGTGTCTGATGCTGTTTCTTTAGAGAGGTTAGAGAGCAAAAGCATTAAACT 245
|| ||||||||||||||||| ||||| ||| ||||| |||||||||||| || |||||
Sbjct 160 GACAAGTTTAGTGTCTGATGTTGTTTGTTTTCAGAGGAAAGAGAGCAAAAGTATGAAACT 219
Query 246 TGCGATGCTTGCTAGTGGTTTAGGAGTGGCGAACTTGGTAACTCTTAGCTCAGCAAAAGC 305
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 220 TGTGATGCTTGCTAGTGGTTTAGGAGTGGCAAACTTGGTAACTCTTAGCTCAGCAAAGGC 279
Query 306 CGCAGACTTGAAGATGATTGTCTTGGATCAAGCCACTTCCATTTACATCTTGGCTGAAGG 365
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 280 CGCAGACTTGAAGATGATTGTCTTGGATCAAGCCACTTCCCTTTACATTTTGGCTGAAGG 339
Query 366 AAGCCTTGGAGATTCGGTCGGGAACTTCTTGTATTCAGCTAACCAACAGGCTAACGAAGC 425
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 AAGCCTTGGTGATTCGGTCGGGAACTTCTTGTATTCAGCTAACCAACAGGCTAACGAAGC 399
Query 426 TGTTCAAGATCAACTATCAGCACTCAGTGTAACAAGTTTGGCAGTAATATTTGGGGCAGG 485
|||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 400 TGTTCAGGATCAGCTTTCAGCTCTCAGTGTAACAAGTTTGGCAGTAATATTTGGGGCAGG 459
Query 486 CCTTGTGACAAGTCTGTCTCCATGTACACTTAGTGTTTTGCCGTTGACACTTGGTTATAT 545
||||||||||||| |||||||||||||||| |||||| |||| ||||||||||| |||||
Sbjct 460 CCTTGTGACAAGTTTGTCTCCATGTACACTAAGTGTTCTGCCTTTGACACTTGGCTATAT 519
Query 546 TGGTGCATTTGGGTCTGGCAAAAGCAGAGGTCAGGTTATTGGAGATACAGTTGCTTTCGC 605
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 520 TGGTGCATTTGGGTCTGGCAAAAGCAGAGGGCAGGTTATTGGAGATACAGTTGCTTTCGC 579
Query 606 ACTGGGATTAGCAACTACCTTAGCCCTTCTTGGGATAGTAGCTTCTTTTGCCGGAAAAGC 665
|||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 580 ACTGGGATTAGCAACTACCTTAGCACTTCTTGGTATAGTAGCCTCTTTTGCCGGAAAAGC 639
Query 666 CTATGGACAAATAGGACAAGGATTACCAGTAGCTGCATCCGGTCTGGCTATTGTAATGGG 725
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 640 CTATGGACAAATAGGACAAGGGTTACCAGTAGCTGCATCCGGTCTGGCTATTGTAATGGG 699
Query 726 TCTCAATCTCCTTGAGATAATCGAACTTCAGCTTCCTTCTTTCTTTAACAACTTTGATCC 785
| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 700 TTTTAATCTCCTTGAGATAATCGAACTTCAGCTTCCATCTTTCTTTAACAACTTTGATCC 759
Query 786 TCGTGCTGCAGCAGCAAACTTCCCATCTAGTGTACAAGCATATCTAGCCGGTCTCACATT 845
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 760 TCGTGCTGCAGCAGCAAACTTCCCATCTAGTGTACAAGCGTATCTAGCCGGTCTCACATT 819
Query 846 CGCACTTGCTGCCTCACCTTGTAGTACTCCAGTTCTAGCCACTCTTCTTGGTTACGTGGC 905
|||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 820 CGCACTAGCTGCCTCACCTTGTAGTACTCCAGTTCTAGCCACCCTTCTTGGCTACGTGGC 879
Query 906 TACTTCCAGGGATCCAGTAATTGGTGGAAGCTTACTCTTAACCTATACAACAGGTTACGT 965
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 880 TACTTCCAGGGATCCAGTAATTGGTGGTAGCTTACTCTTAACCTATACAACAGGTTACGT 939
Query 966 CGCTCCACTTATCGTCGCTGCTTCTTTTGCCGGAGCTTTACAGAGCTTACTTTCGTTGCG 1025
|||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 940 TGCTCCACTCATCGTGGCTGCTTCTTTCGCCGGAGCTTTACAGAGCTTACTTTCCTTGCG 999
Query 1026 AAAGGTCTCTGCATGGATCAATCCCATAAGTGGTGCTCTTCTACTTGGAGGAGGTTTATA 1085
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1000 AAAGGTCTCTGCATGGATCAACCCCATAAGTGGTGCTCTTCTACTTGGAGGAGGTTTATA 1059
Query 1086 TACTTTCTTGGATAGGCTTTTTCCTGCTGCTACTATGGTCATGTAAAAACTTAACTTACA 1145
|||||||||||||||||||||||||||||| |||||||||||||||||| | || |||
Sbjct 1060 TACTTTCTTGGATAGGCTTTTTCCTGCTGCAACTATGGTCATGTAAAAA---A-CT-ACA 1114
Query 1146 A-ACTCATTTCGGCCAAAAA---CAAAG-TGTTTGTAAT 1179
||||||||| |||||||| |||| ||||||||||
Sbjct 1115 TTACTCATTTCTGCCAAAAAAAACAAAAATGTTTGTAAT 1153
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44108214969
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5