BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54300.1
Length=1370
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495515 jgi|Araly1|495515|fgenesh2_kg.8__1331__AT5G54300.1 1596 0.0
> Ahg495515 jgi|Araly1|495515|fgenesh2_kg.8__1331__AT5G54300.1
Length=1282
Score = 1596 bits (864), Expect = 0.0
Identities = 1125/1241 (91%), Gaps = 58/1241 (5%)
Strand=Plus/Plus
Query 84 TCTCAATGCCTCTTCTTCTCCCTACCTCTTCCTTCAAAACGACGGCCACCGTCGTAATCG 143
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 64 TCTCAATGCCTCTTCTTCTCCCTAACTCTTCCTTCAAAACTACGGCCACCGTCGTAATCG 123
Query 144 CCGGCG-TTTCATCTATTGCCACGGCGATGATTCTCACGGTCCCTTCCGTTTCCCATTTC 202
|||||| |||| || ||||| |||||| |||||||||| || ||||| |||||||||||
Sbjct 124 CCGGCGTTTTC-TCCATTGCAACGGCGGTGATTCTCACCGTTCCTTCTGTTTCCCATTTT 182
Query 203 GTAGTCTCTTGCTTTCCGATTATTTACGATAACACCGTCTTCCTCTTAAAACCACCGTAT 262
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 GTGGTCTCTTGCTTTCCGATTATTTACGATAACACCGTCTTCCTCTTAAAACCACCGTAT 242
Query 263 CTTTACTTAGTCATCAACTCTATCATCGTCTGCATCATCGCTACTTCTAAACTCACTCAT 322
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 243 CTTTACTTAGTCATCAACTGTATCATCGTCTGCATCGTCGCTACTTCTAAACTCACTCAT 302
Query 323 AAATCGTCCTCCGTCGATGACTCTGAGATCTCGGAAGTAGTGACTCCAA-TACCGATACC 381
||||||||||||||||||| ||||||||||| |||||| | | || | ||| |
Sbjct 303 AAATCGTCCTCCGTCGATGGTTCTGAGATCTCTGAAGTA---A-T--AACT-CCGGTTTT 355
Query 382 GGTACCGGTTCATTTACCTTCTGATATCGATTCCGGTTATTTAAACGTGGTTCATGTGGT 441
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 356 GGTACCGGTTCATTTACCTTCTGATATCGATACCGGTTATTTAAACGTGGTTCATGTGGT 415
Query 442 TTCTGATTATACCGGATTTGTTGAGAAAATCGATGACGTGTCGATTAATCCAACGGTGGA 501
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 416 TTCTGATTATACCGGATTTGTTGAGAAAATCGATGACGTGTCGATTAATTCAACGGTGGA 475
Query 502 GGCTATCCGGAAGTTTCCAGAAGTTCAGGAGGCGGAGAAGTCGAAAGAGAGTAGCGATTC 561
|| | ||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||
Sbjct 476 GGATGTCCGGAAGTTTCCAGAAGTTCAGGAGGCGGAGAAGTCAAAACAGAGAAGCGATTC 535
Query 562 GCCGGAACCGGAGACGGAGAAGCCAAAATTGAAGAATGATTCGCCGGAGATTTCGATTCT 621
|||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 536 GCCGGAACTGGAGACGGAGAAGCCAACACTGAAGAATGATTCGCCGGAGATTTCGATTCT 595
Query 622 GAAGCACAGTACGAGAAAACCGCCGCGATTTAATCAGCAAAAATCTCTTAAATCTAATTC 681
|||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 596 TCAGCATAGTACGAGAAAACCGCCGAGATTTCATCAGCAAAAATCTCTTAAATCTAATTC 655
Query 682 AGAAGGTGGAAATAAAAAGACGGCGTTGGGAGT-G--ACGAAGCCACCGAGGAGACAAGA 738
||||||||||||||||||||||||||||||||| | || |||| |||||||||||||||
Sbjct 656 AGAAGGTGGAAATAAAAAGACGGCGTTGGGAGTAGTAACAAAGCAACCGAGGAGACAAGA 715
Query 739 CACGCTGGAGACGACGTGGAAGAAGATAACGGAAGGACGTTCAACGCCGTTAACTAAGCA 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CACGCTGGAGACGACGTGGAAGAAGATAACGGAAGGACGTTCAACGCCGTTAACTAAGCA 775
Query 799 CTTGACTAAATCCGACACGTGGCAAGAAAGAGCTCACGTGCAAAGCTCACCAGAAAATAA 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 776 CTTGACTAAATCCGACACGTGGCAAGAAAGAGCTCACGTGCAAAGCTCACCAGAAAACAA 835
Query 859 GGAGAAGATGACCAAGTCCGAGAATTTAAAGGACATAAATACCCC--C--ACG-G-AGGA 912
| | | |||||| ||||||||||||||||| |||||| ||||||| | | | | ||||
Sbjct 836 G-A-A-GATGACAAAGTCCGAGAATTTAAATGACATATATACCCCTGCGGAGGAGGAGGA 892
Query 913 GAAGACGGTGTTGAAACGCGAGCCGTCGCCGGGACAGGAGGAGTTGAATCGGCGCGTTGA 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 893 GAAGACGGTGTTGAAACGCGAGCCGTCGCCGGGACAGGAGGAGTTGAATCGGCGCGTGGA 952
Query 973 AGCGTTTATAAAGAAGTTTAACGAAGAGATGAGATTGCAAAGATTAGAATCTTTGGCTAA 1032
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 AGCGTTTATTAAGAAGTTTAACGAAGAGATGAGATTGCAAAGATTAGAATCTTTGGCTAA 1012
Query 1033 ATACAATGAAATGGTAAATGGAGGGACTCGTTTGTAAATTTTCGTGGTTTTTGCTTAGGC 1092
||| |||||||||||||||| ||||||||||||||||||||| | |||||||| |||||
Sbjct 1013 ATATAATGAAATGGTAAATGAAGGGACTCGTTTGTAAATTTTGG-GGTTTTTGTTTAGGT 1071
Query 1093 GTCGGTGAAGGAGAAAAATGACGGCACAGTCGCAAAAGTTGACTTGACTCTTTTTTACAA 1152
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1072 GTCGGTGATGGAGAAAA-TGACGGCACAGTCGCAAAAGTTGACTTGACTCTTTTTTAGAA 1130
Query 1153 CCACTTAAAAGAGtttttttttCCTTCTTCCGGGGAACAAAATTTCAAAATAATGCAAAA 1212
||||||||| ||| |||||| | || || | || | || |||
Sbjct 1131 CCACTTAAA-GAGGTTTTTT--C------------AA-AA--T---AA--T---GCGAAA 1164
Query 1213 ATTGTGTTTATGATTGTTATGTTTCTTTTGGGGTCGAGA----C--GTTAATCGTGTGGT 1266
||||||||||||||||||||||||||||||||| ||| | | |||| |||||||||
Sbjct 1165 ATTGTGTTTATGATTGTTATGTTTCTTTTGGGG-CGAAAAAATCACGTTACTCGTGTGGT 1223
Query 1267 TACAAGTGAAGGATTATATGTTAA-CAGTAGTGAGTAGTGA 1306
||||| ||||||||||| ||| || ||||||||| ||||||
Sbjct 1224 TACAAATGAAGGATTATCTGTAAAACAGTAGTGACTAGTGA 1264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51275323365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5