BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54310.1
Length=1866
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495516 jgi|Araly1|495516|fgenesh2_kg.8__1332__AT5G54310.1 2878 0.0
> Ahg495516 jgi|Araly1|495516|fgenesh2_kg.8__1332__AT5G54310.1
Length=1839
Score = 2878 bits (1558), Expect = 0.0
Identities = 1771/1869 (95%), Gaps = 34/1869 (2%)
Strand=Plus/Plus
Query 1 TCTCTCTCTCTTGGTCGCTCGTTCTCAAAGGGCAAAGAA--AAAAGGATTTTTAATTTTC 58
||||||||||||||||||||||||||||||| |||| || |||||||||||| |||||
Sbjct 1 TCTCTCTCTCTTGGTCGCTCGTTCTCAAAGGACAAA-AACCAAAAGGATTTTTCTTTTTC 59
Query 59 GGAGAGGAAGAAGAAGAGAGAGATATTGAAGAGCGCTGAAGGCGGAAAAGACTATTTTGA 118
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 60 -AAGAGGAAGAAGAAGAGAGAGATATTGAAGAGCGCTGAAGGCGGAAAAGACTGTTTTGA 118
Query 119 CCTCGTCGTCTCCGTAGATCAtttttcttcagctcttcttcttcctctttct-ccgattc 177
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 119 CCTCGTCGTCTCCGTAGATCATTTTTCTTCAGCTCTTCTTCTTCCTCTTT-TGCCGATTC 177
Query 178 tccttcttttgattttATCTATCCGCCATGAACGAGAAAGCCAACGTCTCTAAGGAGCTT 237
|||||| || ||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 178 TCCTTC-TTCGATTTTATCTACCCGCCATGAACGAGAAAGCCAACGTTTCTAAGGAGCTT 236
Query 238 AATGCCCGCCATAGAAAGATTCTTGAAGGGCTTCTTAAACATCCAGAGAACAGAGAATGT 297
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 237 AATGCCCGCCATAGAAAGATTCTTGAAGGGCTTCTTAAACATCCAGAGAACAGGGAATGT 296
Query 298 GCTGACTGCAAAACAAAAGGTCCAAGATGGGCTAGTGTTAATTTAGGTATCTTTATCTGC 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GCTGACTGCAAAACAAAAGGTCCAAGATGGGCTAGTGTTAATTTAGGTATCTTTATCTGC 356
Query 358 ATGCAATGTTCTGGGATTCACAGGAGTCTCGGGGTACACATATCGAAGGTTCGATCTGCC 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 ATGCAATGTTCTGGGATTCACAGGAGTCTCGGGGTACACATATCGAAGGTTCGATCTGCC 416
Query 418 ACTCTGGACACATGGCTCCCCGAGCAGGTTGCATTTATACAGTCAATGGGAAATGATAAA 477
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 417 ACTCTGGACACATGGCTCCCCGAGCAGGTTGCATTTATACAGTCGATGGGAAATGAGAAA 476
Query 478 GCAAATAGTTACTGGGAAGCAGAGCTACCCCCAAACTATGATAGAGTTGGAATTGAGAAT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GCAAATAGTTACTGGGAAGCAGAGCTACCCCCAAACTATGATAGAGTTGGAATTGAGAAT 536
Query 538 TTTATACGTGCAAAGTATGAAGAGAAGAGATGGGTTTCTAGAGGGGAAAAGGCTAGATCA 597
|| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 537 TTCATACGTGCAAAGTATGAAGAGAAGAGATGGGTTTCTAGAGGGGAAAAGGGAAGATCA 596
Query 598 CCTCCTAGAGTCGAGCAGGAACGGCGGAAATCTGTGGAGAGAAGTGGGCCGGGATATGAG 657
|| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 597 CCCCCTAGAGTTGAGCAGGAACGGCGGAAATCTGTGGAGAGAAGCGGGCCTGGATATGAG 656
Query 658 CATGGACATAGTAGTAGTCCTGTAAATTTGTTTGAGGAGAGGAAAACTATTCCAGCATCT 717
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CATGGGCACAGTAGTAGTCCTGTAAATTTGTTTGAGGAGAGGAAAACTATTCCAGCATCT 716
Query 718 AGAACAAGAAATAATGTTGCTGCAACGAGAATAAATCTTCCCGTGCCTCCCCAAGGACCC 777
||||||||||||||||||| |||||| || |||| |||||| ||||||||||||||||||
Sbjct 717 AGAACAAGAAATAATGTTGGTGCAACAAGGATAAGTCTTCCAGTGCCTCCCCAAGGACCC 776
Query 778 AGTCAGGTTATAAAGCCACAGCAGAAAATGGAGTCTGCAGCTACTCCAGTAGAGAGGGAG 837
||||||||||||||||||||| |||||||||||||||||| ||||||| |||| ||||
Sbjct 777 GGTCAGGTTATAAAGCCACAGCGGAAAATGGAGTCTGCAGCCGCTCCAGTGGAGACGGAG 836
Query 838 AAACAAGCAGTAAATGTTGCACCAGCATCAGATCCTCCAAAGGTGGATTTTGCTACTGAT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AAACAAGCAGTAAATGTTGCACCAGCATCAGATCCTCCAAAGGTGGATTTTGCTACTGAT 896
Query 898 CTGTTTAACATGCTATCAATGGATGATTCGACTACAAATACCTCAGAGGCAACTCCTGGC 957
|| ||||||||||||||||||||||| | ||| | | || || | | |||
Sbjct 897 CTCTTTAACATGCTATCAATGGATGAGGCAACTCC---TGCC---GATG-A------GGC 943
Query 958 GATACTCCTGCCGATGATAACTCATGGGCTGGCTTTCAGTCTGCTGGAAGTGGTCAAACG 1017
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 -A-ACTCCTGCCGATGATAACTCATGGGCTGGCTTTCAGTCTGCTGGAAGTGGTCAAACG 1001
Query 1018 GCAGAGAAAATTGTCACAGCCAAGCCTGCTGAGAGCAGTTCTCCTCCAGCTTCATCTTCT 1077
|||||||||||||||||||| |||||||||||||||||||||||||||||| || || ||
Sbjct 1002 GCAGAGAAAATTGTCACAGCGAAGCCTGCTGAGAGCAGTTCTCCTCCAGCTCCAGCTACT 1061
Query 1078 GACTTTGAGGATTTGTTTAAGGACACACCTAATTTAACAACTCAACAAGCACCAAAAGAT 1137
| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1062 GGGATTGAGGATTTGTTTAAAGACACACCTAATTTAACAACCCAACAAGCACCAAAAGAT 1121
Query 1138 GTGAAAGGCGATATCATGAGCCTGTTTGAGAAGACGAATATAGTATCGCCTTTTGCCATG 1197
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 GTGAAAGGTGATATCATGAGCCTGTTTGAGAAGACGAATATAGTATCGCCTTTTGCCATG 1181
Query 1198 CATCAGCAACAGGTTGCTATGCTCGCTCAGCAGCAAGCCCTTTACATGGCTGCAGCGAAA 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 CATCAGCAACAGGTTGCTATGCTCGCTCAGCAGCAAGCCCTTTACATGGCTGCAGCGAAA 1241
Query 1258 GCTGCTGGAGGCACTCCAAACGGCGTGAATCAACAAGCTATTGCTAATGCTCTTAACGTA 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 GCTGCTGGAGGCACTCCAAACGGCGTGAATCAACAAGCTATTGCTAATGCTCTTAACGTA 1301
Query 1318 GCTTCTGCAAATTGGTCAAACCCCGGCGGCTACCAGATCCCCGGAATGACTAACCCCGTA 1377
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1302 GCTTCTGCAAATTGGTCAAACACCGGTGGCTACCAGATCCCCGGAATGACTAACCCCGTA 1361
Query 1378 GGTGGTCAAGCTGATCTCCAGAAACTTATGCAAAACATGAATATGAACGCAAACATGAAC 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 GGTGGTCAAGCTGATCTCCAGAAACTTATGCAAAACATGAATATGAACGCAAACATGAAC 1421
Query 1438 ACGAGACCCGCACAACCGCAAGAGAACACTCTACAATACCCATCATCCAGTTTCTACACA 1497
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1422 ATGAGACCCGCACAACCGCAAGAGAACACTCTACAATACCCATCATCCAGTTTCTACACG 1481
Query 1498 ATGGGTCAAGCTAATCAAGTGAACGGTATGACCCCAAACTCAACCGGTAAACCTCAGTCA 1557
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1482 ATGGGCCAAGCTAATCAAGTAAACGGTATGACCCCAAACTCAACCGGTAAACCTCAGTCG 1541
Query 1558 TCATCCGCAACCCAACCAACAAGCACCACACCATCTTCACAATCAGGCAAAGACTTTGAT 1617
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1542 TCATCCGCAACACAACCAACAAGCACCACACCATCTTCACAATCGGGCAAAGACTTTGAT 1601
Query 1618 TTCTCTTCCTTGATGGATGGAATGTTCACAAAACATTGATCAAGAGAGAGAGACTTTTTC 1677
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1602 TTCTCTTCCTTGATGGATGGAATGTTCACAAAACATTGATCAAGAGAGAGA--CTTTTTC 1659
Query 1678 TGAATTTGCCTTTACATCTTTGTTCTAAATTTGAAGAACCAAAAGAATATATATACAATC 1737
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1660 CGAATTTGCCTTTTCATCTTTGTTCTAAATTTGAAGAACCAAAAGAATATATATACAATC 1719
Query 1738 ATCTCTGGACAGTTTTTCTCTGTTAAACATATATTTTCTTTTCTT-TGGAACTGTGTTGT 1796
|||||||||||||| ||||||||||| |||| ||| | | ||||||||||||||
Sbjct 1720 ATCTCTGGACAGTT-------GTTAAACATAT-TTTT-TTTCCCTATGGAACTGTGTTGT 1770
Query 1797 AGCCGAGCTTTGATTTATGATTTTACTCGATTGTCGAAAAATTAATAGATGTAATTCTTG 1856
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1771 AGCCGGGCTTTGATTTATGATTTTACTCGATTGTCGAAAAATTAATAGATGTAATTCTTG 1830
Query 1857 CTAAGAAAG 1865
|||||||
Sbjct 1831 AGAAGAAAG 1839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70086050800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5