BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54330.1
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495521 jgi|Araly1|495521|fgenesh2_kg.8__1337__AT5G54330.1 1901 0.0
Ahg495522 jgi|Araly1|495522|fgenesh2_kg.8__1338__AT5G54320.1 706 0.0
Ahg495613 jgi|Araly1|495613|fgenesh2_kg.8__1429__AT5G55270.1 616 1e-175
> Ahg495521 jgi|Araly1|495521|fgenesh2_kg.8__1337__AT5G54330.1
Length=1071
Score = 1901 bits (1029), Expect = 0.0
Identities = 1057/1071 (99%), Gaps = 0/1071 (0%)
Strand=Plus/Plus
Query 1 ATGTCTCTGCTTCTAAACCAACCTTTGAAGCTACTATGCTTTCGGAGGAAACCTGTACTG 60
||||||||| |||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTCTGGTTCTCAACCAGCCCTTGAAGCTACTATGCTTTCGGAGGAAACCTGTACTG 60
Query 61 GTAAGATCCTCTCTGATGCAAACCCCTCCTTGTTCAATCGTCGGCGTTCAACCTTGTGGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTAAGATCCTCTCTGATGCAAACCCCTCCTTGTTCAATCGTCGGCGTTCAACCTTGTGGA 120
Query 121 GCTGATCATCTCGGGAGACTCGATGTTATGATGATGTCTCGACGCACTTGCTTGGAAAAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTGATCATCTCGGGAGACTCGATGTTATGATGATGTCTCGACGCACTTGCTTGGAAAAG 180
Query 181 AAGGTGCCTCTAGAGTTGGTGCACAGTGATCCCATGGTAACGATCGGGTCATCCCATGGT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGGTGCCTCTAGAGTTGGTGCACAGTGATCCCATGGTAACGATCGGGTCATCCCATGGT 240
Query 241 TGGGTAGCTACTTTGAAGGACGACGGTATATTGCGTCTCCAAGATGATTTTAACCCGGCT 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 TGGGTAGCTACTTTGAAGGACGACGGTATATTGCGTCTCCAAGATGATTTAAACCCGGCT 300
Query 301 GCATCGGATACGAACCCTAAACGCATTCCCTTGCCTCCTCTTGTAACTCTGCCCCATTGC 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCATCGGATATGAACCCTAAACGCATTCCCTTGCCTCCTCTTGTAACTCTGCCCCATTGC 360
Query 361 CAAACTCAAATCGTCACCAATGTGTCAATGTCTTCATCTTCTCCCGAGGATGAGGACTGT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CAAACTCAAATCGTCACCAATGTGTCAATGTCTTCATCTTCTCCCGAGGATGAGGACTGT 420
Query 421 GTCGTGGCTGTCAAGTTCTTAGGACCTCAGCTCAGCTTTTGCAGACCAGCTCAACGTAAA 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 GTCGTGGCTGTCAAGTTCTTAGGACCTCAGCTCAGCTTTTGCAGACCGGCTCAACGTAAA 480
Query 481 CCCGAGTGGATCAACGTCAGAATCGCAAACCCCTGTTTCTACTCCTCCAGTGTCATGTAT 540
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 481 CCCGAGTGGATCAACGTCAGAATCGCAAACCCCTGTTTCTACTCCTCCCGTGTCATGTAT 540
Query 541 TCGGAGAAAGATGACATGTTTCGCATTCCCGGATCTGGAGGCCATCTCATTGGATCATGG 600
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCGGAGAAACATGACATGTTTCGCATTCCCGGATCTGGAGGCCATCTCATTGGATCATGG 600
Query 601 GATCTCGGTACACACATGCACACACCCAAGATTCAGAAGCTGCGATTTAAAAAGTTTCCC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GATCTCGGTACACACATGCACACACCCAAGATTCAGAAGCTGCGATTTAAAAAGTTTCCC 660
Query 661 AATCTTGCAAAGACCACACGGAAGCTTCTGGATTCTTGCTGTACAAGCGAGCACTTGGTG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AATCTTGCAAAGACCACACGGAAGCTTCTGGATTCTTGCTGTACAAGCGAGCACTTGGTG 720
Query 721 GAATCACGATCCACTGGTGGTGAAATGTTCTTGGTTAAGTGGTACAAGAGAACCGCTGAG 780
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 721 GAATCACGATCCACTGGTGGTGAAATGTTCTTGGTTAAGTGGTATAAGAGAACCTCTGAG 780
Query 781 ATCGTCAATGGTGTTGCGAAAATGGGAACCGAAGCTTTGATGGTGTTCAAGCTTGACGAA 840
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 781 ATCGTCAATGGTGTTGCGAAAATGGGAACCGAAGCTTTAATGGTGTTCAAGCTTGACGAA 840
Query 841 CAAGGAAACGCGGTTTACACCCAAGACATTGGAGATCTCTGCATGTACCTCTCAAAATCT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CAAGGAAACGCGGTTTACACCCAAGACATTGGAGATCTCTGCATGTACCTCTCAAAATCT 900
Query 901 GAACCATTTTGTGTCCCTGCTAGTTCCTTTCCAGGTCTCCCCTCTAACCAGGTTATAATC 960
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GAACCTTTTTGTGTCCCTGCTAGTTCCTTTCCAGGTCTCCCCTCTAACCAGGTTATAATC 960
Query 961 TATGATTTCGACGAAGCAGGATTTTTCTTTCTGGATAATTTACGCTTCATTGGTGGTAAT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TATGATTTCGACGAAGCAGGATTTTTCTTTCTGGATAATTTACGCTTCATTGGTGGTAAT 1020
Query 1021 TCTACATTTAAGGCTCCTTTCCATATTCCACCTCCAAATATGAACAACTAG 1071
|||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TCTACATTTAGGGCTCCTTTCCATATTCCACCTCCAAATATGAACAACTAG 1071
> Ahg495522 jgi|Araly1|495522|fgenesh2_kg.8__1338__AT5G54320.1
Length=1110
Score = 706 bits (382), Expect = 0.0
Identities = 665/794 (84%), Gaps = 49/794 (6%)
Strand=Plus/Plus
Query 161 GAC-GCACTTGC-TTGGAAAAGAAGGTGCCTCTAGAGTTGGTGCACAG-TGATCCCA-TG 216
||| |||||| | ||||| |||||||||||| | | |||| || | | | || | |
Sbjct 202 GACTGCACTT-CTTTGGATAAGAAGGTGCCTATGGCGTTGTTGTA-TGATAAT-GAACTT 258
Query 217 GTAACGATCGGGTCATCCCATGGTTGGGTAGCTACTTTGA---AGGACGACGGTA-TATT 272
||||| ||||| ||||||||||| ||| |||||||||||| |||||||||| | || |
Sbjct 259 GTAACCATCGGTTCATCCCATGGCTGGATAGCTACTTTGAGTCAGGACGACGG-ACTACT 317
Query 273 GCGTCTCCAAGATGATTTTAACCCGGCTGCATCGGATACGAACCCTAAACGCATTCCCTT 332
|||||||||||| ||| | ||||||| |||||||||||| ||||| |||||||||||| |
Sbjct 318 GCGTCTCCAAGACGATCTAAACCCGGTTGCATCGGATACAAACCCGAAACGCATTCCCCT 377
Query 333 GCCTCCTCTTGTAACTCTGCCC-CATTGCCAAACTCAAATCGTCACCAATGTGTCAATGT 391
|||||||||||||||||| ||| |||||||||||||||||||| |||||||||||| |||
Sbjct 378 GCCTCCTCTTGTAACTCT-CCCTCATTGCCAAACTCAAATCGTTACCAATGTGTCATTGT 436
Query 392 CTTCATCTTCTCCCGAGGATGAGGACTGTGTCGTGGCTGTCAAGTTCTTAGGACCTCAGC 451
| ||||||||||| |||||||| |||||||| |||||||||||||| || ||||||||||
Sbjct 437 CCTCATCTTCTCCTGAGGATGAAGACTGTGTTGTGGCTGTCAAGTTTTTGGGACCTCAGC 496
Query 452 TCAGCTTTTGCAGACCAGCTCAACGTAAAC-CCGAGTGGATCAACGTCAGAATCGCAAAC 510
|||||||||||||||| |||||| || ||| |||||||||||||| ||||||||| ||||
Sbjct 497 TCAGCTTTTGCAGACCGGCTCAAAGT-AACTCCGAGTGGATCAACATCAGAATCGAAAAC 555
Query 511 CCCTGTTTCTACTCCTC-CAGTGTCATGTATTCGGAGAAAGATGACATGTTTCGCATTCC 569
|| ||||||||||| || | |||||||||| || |||||||| |||||||| |||||||
Sbjct 556 CCTTGTTTCTACTCATCTC-GTGTCATGTACTCCAAGAAAGATAACATGTTTTGCATTCC 614
Query 570 CGGATCTGGAGGCCATCTCATTGGATCATGGGATCTCGGTACACACATGCACACACCCAA 629
|||||||||||| || ||||||||| ||||||||||| | |||||| || | | ||
Sbjct 615 CGGATCTGGAGGACACCTCATTGGAACATGGGATCTCCG--CACACA--CA-A-GCATAA 668
Query 630 GATT-CAGAAG-CTGCGA-TTTAAAAAGTTTCCCAATCTTG-CAAAGACCACACGGAAGC 685
|| ||| || ||| | ||| |||| ||||||| | || ||||||||| || |||||
Sbjct 669 -TTTGCAG-AGTTTGC-AGTTTCAAAACCTTCCCAAGC-TGACAAAGACCAAACAGAAGC 724
Query 686 TTCTGGATTCTTGCTGTACA-AGCGAGCACTTGGTGGAATCACGATCCACTGGTGGTGAA 744
| |||||||| ||||| | | |||||||||||||| || | | | ||| | |||||||
Sbjct 725 TACTGGATTCATGCTGCA-AGAGCGAGCACTTGGTTGAGT--C-A-CCA--GCTGGTGAA 777
Query 745 A-TGTTCTTGGTTAAGTGGTACAAG-AGAACCGCT-G--AGATCGTCAATGGTGTTGCGA 799
| | ||||||||||||||||||||| || | || | ||||| |||| ||| |||||
Sbjct 778 ACT-TTCTTGGTTAAGTGGTACAAGAAG-TCTTCTGGCAAGATCATCAAGGGTATTGCGC 835
Query 800 AAATGGGAAC-CGAAGCTTTGATGGTGTTCAAGCTTGACGAACAAGGAAACGCGGTTTAC 858
||||| ||| | ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 836 AAATGAAAACAC-AAGCTTTAATGGTGTTCAAGCTTGACGAACAAGGAAACGCGGTTTAC 894
Query 859 ACCCAAGACATTGGAGATCTCTGCATGTACCTCTCAAAATCTGAACCATTTTGTGTCCCT 918
|| ||||||||||||||||||||||| | ||||||||| |||||||| ||||||||||||
Sbjct 895 ACTCAAGACATTGGAGATCTCTGCATTTTCCTCTCAAAGTCTGAACCTTTTTGTGTCCCT 954
Query 919 GCTAGTTCCTTTCC 932
||||| || |||||
Sbjct 955 GCTAGCTCTTTTCC 968
Score = 91.6 bits (49), Expect = 1e-17
Identities = 61/67 (91%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 7 CTGCTTCTAAACCAACCTTTGAAGCTACTATGCTTTCGGAGGAAACCTGTACTGGTAAGA 66
|||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 7 CTGCTTCTCAACCAACCCTTGAAGCTACTATGCTTTCGGAGGAAACCTGTGTTGGTAAGA 66
Query 67 TCCTCTC 73
| ||||
Sbjct 67 GCATCTC 73
> Ahg495613 jgi|Araly1|495613|fgenesh2_kg.8__1429__AT5G55270.1
Length=904
Score = 616 bits (333), Expect = 1e-175
Identities = 581/696 (83%), Gaps = 35/696 (5%)
Strand=Plus/Plus
Query 172 TTGGAAAAGAAGGTGCCTCTAGAGTTGGTGCACAGTGATCCCATGGTAACGATCGGGTCA 231
||||||||||||||| || | ||||||||| | | | ||| |||| |||||||||||||
Sbjct 234 TTGGAAAAGAAGGTGGCTATGGAGTTGGTGGATA-T--TCCAATGGCAACGATCGGGTCA 290
Query 232 TCCCATGGTTGGGTAGCTACTTTGAAGGACGACGGTATATTGCGTCTCCAAGATGATTTT 291
||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| |
Sbjct 291 TCCCATGGTTGGGTAGCTACTTTGAAGGAAGACGGAATACTGCGTCTCCAAGATGATCTA 350
Query 292 AACCCGGCTGCATCGGATAC-GAACCCTAAACGCATTCCCTTGCCTCCTCTTGTAACTCT 350
||||| ||||||| |||| ||||| ||||| |||||| |||||||||||||||||||
Sbjct 351 AACCCAAATGCATCGTATACAGAACCA-AAACGTATTCCCCTGCCTCCTCTTGTAACTCT 409
Query 351 GCCCCATTGCCAAACTCAAATCGTCACCAATGTGTCAATGTCTTCATCTTCTCCCGAGGA 410
||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct 410 GCCTCATTGCCAAACTCAAATCGTTACCAATGTGTCAATGTCCTCATCTTCTCCTGAGGA 469
Query 411 TGAGGACTGTGTCGTGGCTGTCAAGTTCTTAGGACCTCAGCTCAGCTTTTGCAGACCAGC 470
|||||||||||||||||||||||||||||| |||||||| | |||||||||||||| ||
Sbjct 470 TGAGGACTGTGTCGTGGCTGTCAAGTTCTTGGGACCTCAAATAAGCTTTTGCAGACCGGC 529
Query 471 TCAACGTAAACCCGAGTGGATCAACGTCAGAATCGCAAACCCCTGTTTCTACTCCTC-CA 529
| || |||| |||||||||||||| ||||||||||||||||||| ||||||||||| |
Sbjct 530 TAAAAGTAATTCCGAGTGGATCAACATCAGAATCGCAAACCCCTGCTTCTACTCCTCTC- 588
Query 530 GTGTCATGTATTCGGAGAAAGATGACATGTTTCGCATTCCCGGATCTGGAGGCCATCTCA 589
||||||||| ||||||||||||||| ||||||||||| | |||||||||||||||| |||
Sbjct 589 GTGTCATGTTTTCGGAGAAAGATGAGATGTTTCGCATACTCGGATCTGGAGGCCATATCA 648
Query 590 TTGGATCATGGGATCTCGGTACACACATGCACACACCCAAGATTCAGAAGCTGCGATTTA 649
||||||||||||||||| ||||| | ||| | ||||| |||||| | ||| | ||
Sbjct 649 TTGGATCATGGGATCTCCACACACAGAAGCAAA-ACCCAT--TTCAGAGGTTGC-AGTTC 704
Query 650 A-AAAGTTTCCCAATCTTG-CAAAGACCACACG-GAAGCTTCTGGATTCTTGCTGTACAA 706
||| ||||||| || | ||||||||| ||| || |||| ||||||| |||| | ||
Sbjct 705 CTAAACCTTCCCAAGCT-GACAAAGACCAAACGAGA-GCTTATGGATTCGTGCTACAAAA 762
Query 707 GCGAGCACTTGGTGGAATCACGATCCACTGGTGGTGAAA-TGTTCTTGGTTAAGTGGTAC 765
|||| |||||| |||| ||| || |||| |||| ||| | ||||| |||||||||||
Sbjct 763 GCGAACACTTGTTGGAGTCAAGAACCACCGGTG---AAACT-TTCTTAGTTAAGTGGTAT 818
Query 766 AAGAGAA-CCG-CTG-AGATCGTCAATGGTGTTGCGAAAATGGGAACCGAAGCTTTGATG 822
| || || ||| ||| ||| || | || | ||||| || ||| ||||||| |||
Sbjct 819 AGGA-AAGCCGTCTGGAGAG-GT-A-TG-T----CGAAACTGAAAACAAAAGCTTTAATG 869
Query 823 GTGTTCAAGCTTGACGA-ACAAGGAAACGCGGTTTA 857
||||||||||| ||| | | |||| ||||| |||||
Sbjct 870 GTGTTCAAGCTAGACTATA-AAGGGAACGCTGTTTA 904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39876571182
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5