BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54340.1
Length=735
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495523 jgi|Araly1|495523|fgenesh2_kg.8__1339__AT5G54340.1 946 0.0
Ahg950073 jgi|Araly1|950073|scaffold_801960.1 721 0.0
Ahg331780 jgi|Araly1|331780|fgenesh1_pm.C_scaffold_8001123 69.4 3e-11
> Ahg495523 jgi|Araly1|495523|fgenesh2_kg.8__1339__AT5G54340.1
Length=696
Score = 946 bits (512), Expect = 0.0
Identities = 573/599 (96%), Gaps = 17/599 (3%)
Strand=Plus/Plus
Query 1 ATGGAGAACCAATCTATGTCTTCATCAAGCTCCTCCACACACAAACATGATCAAAAACTC 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGAGAACCAATCTATGTCTTCATCAAGCTCCTCCACACACAATCATGATCAAAAACTC 60
Query 61 AAAAGTTCCGTTGTGGCCATGGAGGTCCTGGAGGAGAAGGAGACAGTGAACAATCCGCCC 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAAGTTCCGTTGTGGTCATGGAGGTCCTGGAGGAGAAGGAGACAGTGAACAATCCGCCC 120
Query 121 CAGTATTATAATAAGATCTACATCTGTTACTTGTGCAAGAGAGCGTTCCCAACCCCTCAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 CAGTATTATAATAAGATCTACATCTGTTACTTGTGCAAGAGAGCGTTCCCAACCCATCAT 180
Query 181 GCCCTTGGCGGTCACGGAACCACCCACAAGGAGGACCGAGAATTGGAGAGGCAACAGATC 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 GCCCTTGGCGGTCACGGAACCACCCACAAGGAGGACCGAGAAATGGAGAGGCAACAGATC 240
Query 241 GAGTCAAGGCTTTCT-AACAAAGACAAGTCTAACTTGCTCTTTGGTGGGTCTTCACAAGA 299
||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 241 GAGTCAAGGCTTT-TGAACAAAGATAAGTCTAACTTGCTCTTTGGTGGGTCTTCACAAGA 299
Query 300 TGTTTTATCAAATGATAATCACCTTGGACTCTCTCTTGGTCCATTGAAGTCCATAGAAGG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGTTTTATCAAATGATAATCACCTTGGACTCTCTCTTGGTCCATTGAAGTCCATAGAAGG 359
Query 360 TAGCAGCAGCAGCAACAACGTTAACCCATTGCTTAATGTTGGAGTCCCTAGAGGAACCAC 419
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 360 TAGCAGCAGCAGCAGCAACGTTAACCCATTGCTTAATGTTGGAGTCCCTAGAGGACCCAC 419
Query 420 AGATATGAACATGAACA--A-C---TATAGCTCACATGCTTTATCAACTGATGATATTAA 473
||||||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 420 AGATATGAACATGAACATGAACAACTATAGCTCACATGCTTTATCAACTGATGATATTAA 479
Query 474 TCTTGATCTTACTCTTGGTCCATCTAAGTCCATAGGAGATAGCAACAATATCATTAATAA 533
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 480 TCTTGATCTTACTCTTGGTCCATCTAAGTCCATAGGAGGTAGCAACAATATCATTAATAA 539
Query 534 CAACACTAACTCATCCTTCGATGGGAATCTGATCATTCCCGTTCGTCCTCGTGTGTCTA 592
| | | ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 540 C-----T--C--ATCCTTCGATGGGAATCTGATCATTCCCGTTTGTCCTCGTGTGTCTA 589
Score = 174 bits (94), Expect = 7e-43
Identities = 98/100 (98%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 636 AAACATTCCTCCTTCTATTACTTTTCCTCATCTAAACATCAATCTTTCTCATGATTCGTT 695
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 597 AAACATTCCTCCTTCTATTACTCTTCCTCATCTAAACATCAATCTTTCTCATGATTCATT 656
Query 696 TTCTTTACAAGAGAATGGTTCGGGCTCTAGTCACTCATAA 735
||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TTCTTTACAAGAGAATGGTTCGGGCTCTAGTCACTCATAA 696
> Ahg950073 jgi|Araly1|950073|scaffold_801960.1
Length=778
Score = 721 bits (390), Expect = 0.0
Identities = 651/766 (85%), Gaps = 62/766 (8%)
Strand=Plus/Plus
Query 1 ATGGAGAACCAATCTATGTCTTCATCAAGCTCCT-CCACACACAAACATGATCAAAAACT 59
||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||
Sbjct 24 ATGGAGAACCAATCTATGTCTTCTTCAAGCTCCTGCC-CACACAAACATGATCAAAAACT 82
Query 60 CAAAAGTTCCGTTGTGGCCATGGAGGTCCTGGAGGAGAAGGAGACAGTGAACAATCCGCC 119
||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||
Sbjct 83 CAAAAGTTCCGTTGTGGCCGTGGAGGTCCTGGAGGAG--G-AGACAGTGAACAATCCGGA 139
Query 120 CCA-GTATTATAATAAGATCTACATCTGTTACTTGTGCAAGAGAGCGTTCCCA-ACCCCT 177
| | ||||||||||||||||||||||||||||||||||||| ||| ||||| | ||||||
Sbjct 140 C-ATGTATTATAATAAGATCTACATCTGTTACTTGTGCAAGGGAGTGTTCC-AGACCCCT 197
Query 178 CATGCCCTTGGCGGTCACGGAACCACCCACAAGGAGGACCGAGAATTGGAGAGGCA--A- 234
||||||||||||||||||||||||||| | ||||| || ||||||||||||||| |
Sbjct 198 CATGCCCTTGGCGGTCACGGAACCACCGAGAAGGA---CCAAGAATTGGAGAGGCAGCAG 254
Query 235 -----C-AGATCGAGTCAAGGCTTTCTAACAAAGACAAGTCTAACTTGCTCTTTGGTGGG 288
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 255 AAGATCCAGATCGAGTCAAGGCTTTCTAACAAAGACAAGTCTAACTTGATCTTTGGTGGG 314
Query 289 TCTTCACAAGATGTTTTATCAAATGATAATCACCTTGGACTCTCTCTTGGTCCATTGAAG 348
|||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
Sbjct 315 TCTTCACAAGATGTTTTATCAAATGATAATCATCTTGGACTCTCTCTTGGTC-A--G--- 368
Query 349 TCCATAGAAGGTAGCAGCAGCAGCAACAACGTTAACCCATTGCTTAATGTTGGAGTCCCT 408
||||||| ||||||||||||||||| ||||||| |||| ||| |||||||||||||| |
Sbjct 369 TCCATAGGAGGTAGCAGCAGCAGCAGCAACGTTTACCCGTTGGTTAATGTTGGAGTCAC- 427
Query 409 AGAGGAACCACAGATATGAACATGAACAACTATAGCTCACATGCTTTATCAACTGATGAT 468
||| | | | |||||||||||||||||||||||||| |||| ||| |||||
Sbjct 428 AGA----C-A----T--GAACATGAACAACTATAGCTCACATGATTTACCAA---ATGAT 473
Query 469 ATTAATCTTGATCTTACTCTTGGTCCATCTAAGTCCATAGGAGATAGCAACAATATCAT- 527
||||||||||| |||||||| ||||| ||||| |||||||||| |||||| ||| ||
Sbjct 474 ATTAATCTTGACCTTACTCTCGGTCCTTCTAACTCCATAGGAGGCAGCAACGATAACAAC 533
Query 528 -TAA-TAAC--A-A---CACTAACTCA-TC-CTTCGATGG-----GAATCTGATCATTCC 572
||| |||| | | || | | | || || || |||| ||||||||||
Sbjct 534 ATAACTAACTCATATGTCAATGAGGAAGTCACTA-GAAAAACCACGAATATGATCATTCC 592
Query 573 CGTTCGTCCTCGTGTGTCTAGATACCATTTTGTTGCTGGGAACCCCCTTGATTCAATCTC 632
||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||| |
Sbjct 593 CGTGCGTCCCCGTGTGTCTAGATACCATTTTGTTGCTGGAAACCCGCTTGATTCAATCAC 652
Query 633 TAGAAACATTCCT---CCTTCTATTACTTTTCCTCATCTAAACATCAATCTTTCTCATGA 689
|||||| |||||| ||||||||| || |||||||| ||||| | |||||| ||||||
Sbjct 653 TAGAAATATTCCTGATCCTTCTATTGCTCCTCCTCATCGAAACACCTATCTTTTTCATGA 712
Query 690 TTCGTTTTCTTTACAAGAGAATGGTTCGGGCTCTAGTCACTCATAA 735
|||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 713 TTCGTTTTCTTTACAAGAGAATGGCTCGGGCTCAAGTCACTCATAA 758
> Ahg331780 jgi|Araly1|331780|fgenesh1_pm.C_scaffold_8001123
Length=861
Score = 69.4 bits (37), Expect = 3e-11
Identities = 41/43 (95%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 690 TTCGTTTTCTTTACAAGAGAATGGTTCGGGCTCTAGTCACTCA 732
|||| |||||||||||||||||||||||||||||||| |||||
Sbjct 687 TTCGCTTTCTTTACAAGAGAATGGTTCGGGCTCTAGTAACTCA 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27067271070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5