BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G54360.1

Length=813
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg331780 jgi|Araly1|331780|fgenesh1_pm.C_scaffold_8001123           213    2e-54
  Ahg950073 jgi|Araly1|950073|scaffold_801960.1                        115    5e-25


> Ahg331780 jgi|Araly1|331780|fgenesh1_pm.C_scaffold_8001123
Length=861

 Score =  213 bits (115),  Expect = 2e-54
 Identities = 181/211 (86%), Gaps = 11/211 (5%)
 Strand=Plus/Plus

Query  7    AACCAATCTATGTCTTCTTCAAG---CTCCTCCTCCCCACACAAACATGATCAAAAACTC  63
            |||||||||||||||||||||||   ||||||||||||||| |||| |||||||||||||
Sbjct  7    AACCAATCTATGTCTTCTTCAAGCTCCTCCTCCTCCCCACAAAAACCTGATCAAAAACTC  66

Query  64   AAAAGTGCCC-TTGTGGCCGTGGAGGAGAAGGAGACAATAAACAATCCGAAACAAAGGTC  122
            |||||| ||| ||||  |||||||||||||||||||||  ||||||||| ||||||||||
Sbjct  67   AAAAGT-CCCGTTGTAACCGTGGAGGAGAAGGAGACAAGGAACAATCCGGAACAAAGGTC  125

Query  123  TCCTCAAGAGATTGTGTCTGAAAGGACAAACCTTGAGATGCCTAGTTTCAGATT--AAGT  180
            |||||||||| ||||| ||||||  || | ||||||| |||||| |||| ||||  ||||
Sbjct  126  TCCTCAAGAGGTTGTGGCTGAAAACACGATCCTTGAGTTGCCTACTTTCGGATTTGAAGT  185

Query  181  TTTTTCCGAAAGAAAAGAGA-TACCGTGCTA  210
            | |  ||||| ||||| | | ||||||||||
Sbjct  186  TGT--CCGAACGAAAA-ACAATACCGTGCTA  213


 Score =  102 bits (55),  Expect = 4e-21
 Identities = 101/120 (84%), Gaps = 15/120 (13%)
 Strand=Plus/Plus

Query  403  GGCCC-TTGTAAGTATGGCCAAGGTGGTAGCTCACATGCTTTATCAACTGATGGTATTAA  461
            ||||| || || |||||||||||| |||||    || ||  || |||  |||| ||||||
Sbjct  310  GGCCCGTT-TATGTATGGCCAAGGCGGTAG----CA-GC--TA-CAA--GATGATATTAA  358

Query  462  TCTTGATCTAACTCTTGGTCCATC--C-AAGTCCACAGGAGGCAGCAACAATAGCACTAA  518
            ||||||||| ||||||||||||||  | ||||||||||||||||||||||||||||||||
Sbjct  359  TCTTGATCTCACTCTTGGTCCATCGTCTAAGTCCACAGGAGGCAGCAACAATAGCACTAA  418


 Score = 75.0 bits (40),  Expect = 8e-13
 Identities = 53/59 (90%), Gaps = 2/59 (3%)
 Strand=Plus/Plus

Query  690  GGGCTCTAGTCACTCAAAAAGTCTCATCTCAAAGGGGAAA-AACAAAGTCATGGTGCCT  747
            |||||||||||||||||||||||||||||||| ||  ||| |||| || ||||||||||
Sbjct  594  GGGCTCTAGTCACTCAAAAAGTCTCATCTCAATGGA-AAAGAACATAGCCATGGTGCCT  651


> Ahg950073 jgi|Araly1|950073|scaffold_801960.1
Length=778

 Score =  115 bits (62),  Expect = 5e-25
 Identities = 76/82 (93%), Gaps = 3/82 (4%)
 Strand=Plus/Plus

Query  7    AACCAATCTATGTCTTCTTCAAGCTCCTCCTCCCCACACAAACATGATCAAAAACTCAAA  66
            |||||||||||||||||||||||||||| | ||  |||||||||||||||||||||||||
Sbjct  30   AACCAATCTATGTCTTCTTCAAGCTCCTGC-CC--ACACAAACATGATCAAAAACTCAAA  86

Query  67   AGTGCCCTTGTGGCCGTGGAGG  88
            ||| || |||||||||||||||
Sbjct  87   AGTTCCGTTGTGGCCGTGGAGG  108



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30040858596


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5