BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54380.1
Length=2789
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495518 jgi|Araly1|495518|fgenesh2_kg.8__1334__AT5G54380.1 4281 0.0
> Ahg495518 jgi|Araly1|495518|fgenesh2_kg.8__1334__AT5G54380.1
Length=2778
Score = 4281 bits (2318), Expect = 0.0
Identities = 2642/2796 (94%), Gaps = 32/2796 (1%)
Strand=Plus/Plus
Query 1 ATGGTGTTCACAAAATCATTACTTGTTCTTCTTTGGTTCCTCTCTTGTTACACTACTACT 60
|||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 1 ATGGTGTTCACAAAATCATTACTTGTTCTTCTTTTGTTCCTCTCTTGTT--AC-ACTACT 57
Query 61 ACTTCATCAGCTTTGTTTAATCCGCCAGACAATTACTTGATCTCTTGTGGCTCATCACAA 120
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 58 ACTTCATCTGCTTTGTTTAATCCGCCAGACAATTACTTGATTTCTTGTGGCTCATCACAA 117
Query 121 AACATAACTTTCCAAAACAGAATCTTTGTTCCAGATTCACTCCACTCTTCTCTTGTACTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 AACATAACTTTCCAAAACAGAATCTTTGTTCCAGATTCACTCCACTCTTCTCTTGTACTC 177
Query 181 AAAATCGGAAACTCTTCTGTTGC-A-A-CATCAACTACTTCCAACAATTCAACCAATTCC 237
|||||||| ||||||||||| || | | |||||||||||| | ||||||||||||||||
Sbjct 178 AAAATCGGGAACTCTTCTGTAGCAACATCATCAACTACTT-C--CAATTCAACCAATTCC 234
Query 238 ATCTACCAAACCGCTCGTGTTTTCTCCAGTTTAGCTTCTTACAGATTCAAAATCACTTCT 297
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 235 ATCTACCAAACCGCTCGTGTTTTCTCCGGTTTAGCTTCTTACAGATTCAAAATCACTTCT 294
Query 298 TTAGGTCGACATTGGATCCGTCTTCATTTCTCACCTATCAACAACTCTACTTGGAACTTA 357
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 295 TTAGGTCGACATTGGATCCGTCTTCATTTCTCACCAATCAAGAACTCTACTTGGAACTTA 354
Query 358 ACCTCTGCTTCAATCACTGTCGTAACAGAAGACTTCGTGCTCTTGAACAACTTCTCCTTC 417
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 355 ACCTGTGCTTCAATCACTGTCGTAACAGACGACTTCGTGCTCTTGAACAACTTCTCTTTC 414
Query 418 AACAACTTCAACGGTTCTTACATCTTCAAAGAGTACACAGTCAATGTCACTTCAGAGTTC 477
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 415 AACAACTTCAACGGCTCTTACATCTTCAAAGAGTACACTGTCAATGTCACTTCAGAGTTC 474
Query 478 TTGACTTTAAGTTTCATTCCTTCAAACAATTCGGTGGTCTTTGTCAACGCTATTGAAGTT 537
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TTGACCTTAAGTTTCATTCCTTCAAACAATTCGGTGGTCTTTGTCAACGCTATTGAAGTT 534
Query 538 GTCTCTGTTCCGGATAATCTTATCCCTGATCAAGCTTTGGCGT-TAAACCCTTCAACACC 596
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 535 GTCTCTGTTCCGGATAATCTTATCCCTGATCAAGCTTTGGC-TCTAAACCCTTCAACACC 593
Query 597 ATTTAGTGGTCTCTCTCTGCTTGCATTTGAAACAGTCTACAGATTAAATATGGGAGGACC 656
||||||||||||||||| |||||| |||||||||||||| |||||||| |||||||||||
Sbjct 594 ATTTAGTGGTCTCTCTCAGCTTGCGTTTGAAACAGTCTATAGATTAAACATGGGAGGACC 653
Query 657 ATTGTTGACTTCTCAAAACGATACATTGGGGAGACAATGGGATAATGATGCAGAGTATCT 716
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 654 ATTGTTGACTTCTCAAAACGATACATTGGGAAGACAATGGGATAATGATGCAGAGTATCT 713
Query 717 TCATGTGAACAGCTCTGTTCTTGTTGTAACGGCGAATCCTTCTTCGATTAAGTACTCTCC 776
|||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 714 TCATGTTAATAGCTCTGTTCTTGTTGTAACAGCGAATCCTTCTTCGATTAAGTACTCTCC 773
Query 777 TTCTGTGACTCAAGAAACAGCTCCTAACATGGTTTATGCAACTGCTGATACAATGGGTGA 836
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 774 TTCTGTGACTCAAGAAACAGCTCCTAACATGGTTTATGCTACTGCTGATACAATGGGTGA 833
Query 837 TGCTAATGTTGCGAGTCCAAGTTTTAATGTTACTTGGGTTCTTCCTGTTGATCCAGACTT 896
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 834 GGCTAATGTTGCAAGTCCAAGTTTTAATGTTACTTGGGTTCTTCCTGTTGATCCAGAGTT 893
Query 897 CAGGTACTTTGTTCGTGTTCATTTCTGTGATATTGTGAGTCAAGCTTTGAACACGCTTGT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 CAGGTACTTTGTTCGTGTTCATTTCTGTGATATTGTGAGTCAAGCTTTGAACACGCTTGT 953
Query 957 TTTCAATCTTTATGTGAATGATGATCTTGCTCTTGGAAGTCTTGATCTCTCTACGTTGAC 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 TTTCAATCTTTATGTGAATGATGATCTTGCTCTTGGAAGTCTTGATCTCTCTACGTTGAC 1013
Query 1017 TAATGGTCTTAAAGTTCCTTACTTTAAGGATTTTATCTCCAATGGTTCTGTTGAATCTTC 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TAATGGTCTTAAAGTTCCTTACTTTAAGGATTTTATCTCCAATGGTTCTGTTGAATCTTC 1073
Query 1077 CGGTGTTTTAACCGTTAGCGTTGGACCTGATTCACAAGCTGATATCACTAATGCGACTAT 1136
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1074 CGGTGTTTTAACCGTTAGCGTTGGACCTGATTCGCAAGCTGATATCACGAATGCGACTAT 1133
Query 1137 GAATGGGTTAGAGGTTTTGAAGATTAGTAACGAAGCTAAGAGCTTAAGTGGTGTTTCTTC 1196
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1134 GAATGGGTTAGAGGTTTTGAAGATTAGTAATGAAGCTAAGAGCTTAAGCGGTGTTTCTTC 1193
Query 1197 GGTTAAGTCG-TTACTTCCGGGAGGATCAGGTTCTAAGAGCAAGAAGAAGGCAGTGATCA 1255
|||||||| || |||| |||||||||| | | || |||||||| || |||||||
Sbjct 1194 TGTTAAGTCACTTG-TTCCTGGAGGATCAGATA-TGGGA--AAGAAGAAAGCGGTGATCA 1249
Query 1256 TTGGTTCTTTGGTTGGTGCGGTTACAT-TGATTCTGCTGATTGCTGTTTGTTGCTATTGC 1314
| |||||| |||||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 1250 TCGGTTCTGCAGTTGGTGCGGTTAC-TGTGGTTCTGCTGATTGCTGTTTGTTGCTATTGC 1308
Query 1315 TGTTTGGTTGCTTCAAGGAAGCAGAGGTCGACGAGTCCTCAAGAAGGCGGTAATGGACAT 1374
||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1309 TGTTTGGCTGCTTCGAGGAAGAAGAGGTCGACGAGTCCTCAAGAAGGCGGTAATGGACAT 1368
Query 1375 CCGTGGTTGCCATTACCTTTATATGGACTCTCTCAGACTCTTACTAAATCAACCGCTTCT 1434
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1369 CCGTGGTTGCCATTACCTTTATATGGACTCTCTCAGACTCTTACCAAATCAACCGCTTCT 1428
Query 1435 CACAAGAGTGCCACAGCTAGTTGCATTTCATTAGCTTCTACTCATCTTGGACGTTGCTTT 1494
|| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1429 CATAAGAGTGCCACAGCTAGTTGCATTTCATTAGCTTCTACGCATCTTGGCCGTTGCTTT 1488
Query 1495 ATGTTTCAAGAAATCATGGACGCTACTAATAAGTTCGATGAGAGTTCGTTGCTTGGGGTT 1554
|||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| |||
Sbjct 1489 ATGTTTCAAGAAATCATGGATGCTACTAATAAATTCGATGAGAGCTCGTTGCTTGGTGTT 1548
Query 1555 GGTGGATTTGGCCGCGTTTATAAAGGAACTTTAGAAGACGGGACTAAAGTCGCGGTTAAA 1614
|| || ||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 GGCGGGTTTGGTCGGGTTTATAAAGGAACTTTAGAAGACGGGACTAAAGTCGCGGTTAAA 1608
Query 1615 AGAGGTAACCCGAGATCAGAACAAGGTATGGCTGAGTTCAGAACAGAGATTGAAATGCTG 1674
||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1609 AGAGGTAACCCGAGATCTGAACAAGGTATGGCTGAGTTCAGAACCGAGATCGAAATGCTG 1668
Query 1675 TCAAAACTCAGACATCGACATCTCGTCTCTCTTATCGGTTACTGCGACGAGAGGTCTGAA 1734
|| ||||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 1669 TCTAAACTAAGACATCGACATCTCGTCTCTCTAATCGGTTACTGCGATGAGAGGTCCGAA 1728
Query 1735 ATGATACTGGTCTATGAGTACATGGCGAATGGACCGTTGAGGAGTCATCTATATGGAGCT 1794
||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1729 ATGATTCTGGTCTATGAGTACATGGCGAATGGACCGTTGAGGAGTCATCTCTACGGAGCT 1788
Query 1795 GATCTTCCTCCATTGTCTTGGAAACAAAGACTCGAGATTTGCATCGGTGCAGCGAGAGGA 1854
||||||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 1789 GATCTTCCTCCATTGTCATGGAAACAAAGACTGGAGATATGCATCGGCGCAGCGAGAGGA 1848
Query 1855 TTACATTATCTACACACCGGTGCATCGCAGAGCATTATACACCGTGATGTTAAAACCACG 1914
||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1849 TTACATTATCTACACACTGGTGCATCGCAGAGCATTATACACCGCGATGTGAAAACCACG 1908
Query 1915 AATATCTTACTCGACGAGAATCTAGTCGCCAAAGTTGCAGACTTTGGACTATCCAAAACC 1974
|||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1909 AATATCCTACTGGACGAGAATCTAGTCGCTAAAGTTGCAGACTTTGGACTATCCAAAACC 1968
Query 1975 GGCCCTTCGCTCGATCAAACACACGTGAGCACGGCGGTTAAAGGAAGCTTTGGTTATCTA 2034
|||||||| ||||||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct 1969 GGCCCTTCACTCGATCAAACCCATGTGAGCACGGCGGTTAAAGGAAGCTTCGGTTATCTC 2028
Query 2035 GACCCGGAATACTTCAGGAGACAGCAGTTAACAGAGAAATCAGACGTTTATTCGTTTGGT 2094
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 2029 GACCCGGAATACTTCAGGAGACAGCAGTTAACAGAGAAATCCGACGTTTATTCGTTCGGT 2088
Query 2095 GTTGTACTAATGGAAGTACTCTGTTGTAGACCGGCTTTAAACCCGGTATTACCTAGAGAA 2154
||||| ||||||||||| |||||||| |||||||||||||||||||||||||| || |||
Sbjct 2089 GTTGTCCTAATGGAAGTTCTCTGTTGCAGACCGGCTTTAAACCCGGTATTACCGAGGGAA 2148
Query 2155 CAAGTGAACATAGCGGAATGGGCAATGGCGTGGCAGAAAAAGGGTCTGCTAGATCAAATC 2214
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 2149 CAAGTGAACATAGCGGAATGGGCAATGGCGTGGCAGAAGAAGGGTCTACTCGATCAAATC 2208
Query 2215 ATGGACAGTAACTTAACCGGGAAGGTGAACCCTGCCTCGTTGAAGAAATTTGGAGAAACC 2274
||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||
Sbjct 2209 ATGGACAGTAACTTAACCGGGAAAGTGAACCCTGCCTCGCTGAAGAAATTCGGAGAAACC 2268
Query 2275 GCAGAGAAATGTTTAGCGGAATACGGTGTGGACCGGCCTTCTATGGGAGATGTATTGTGG 2334
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 2269 GCAGAGAAATGTTTAGCAGAATACGGCGTGGACCGGCCTTCTATGGGAGATGTATTGTGG 2328
Query 2335 AATTTGGAGTACGCGTTACAGCTAGAAGAAACATCTTCGGCTTTGATGGAGCCTGATGAC 2394
||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 2329 AATTTGGAGTACGCGTTACAGCTCGAAGAAACATCTTCGGCTTTAATGGAACCTGATGAC 2388
Query 2395 AATAGTACAAACCACATTCCAGGGATTCCAATGGCGCCAATGGAACCGTTTGATAACAGT 2454
||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 2389 AATAGCACAAACCACATTCCAGGGATCCCAATGGCGCCAATGGAGCCGTTTGATAATAGT 2448
Query 2455 ATGAGTATAATCGATAGAGGAGGAGTAAATTCGGGGACCGGGACTGATGATGATGCGGAA 2514
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2449 ATGAGTATAATCGACAGAGGAG---TAAATTCGGGGACCGGGACTGATGATGATGCGGAA 2505
Query 2515 GACGCGACTACTAGTGCGGTGTTTTCGCAGCTTGTTCATCCTCGTGGAAGGTAGAAGAAG 2574
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2506 GATGCGACTACTAGTGCTGTGTTTTCGCAGCTTGTTCATCCTCGTGGAAGGTAGAAGAAG 2565
Query 2575 AACA-CAT-TT-GGTGAAAACAACAGCAGAGACAGA-CATTGTTTGTTTTTGAAAAATTT 2630
|| | ||| || ||||||| ||| | |||||||||| |||||||||||||||| ||||||
Sbjct 2566 AAAAACATATTTGGTGAAA-CAA-A-CAGAGACAGAGCATTGTTTGTTTTTGAGAAATTT 2622
Query 2631 ATAGAAAGAAAGTTATTTATTGAAGACTTTTGGGAAC-AAACAACAAAATGATTCATTCA 2689
| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2623 ACAGAAAGAAACATATTTATTGAAGACTTTTGGGTTGGAAACAACAAAATGATTCATTCA 2682
Query 2690 GCATTTATTTTCGATTTTTTACGGTGTATTTGTTTTGTAATATAGTGAGTACTGATGTTT 2749
| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2683 GAATTCATTTTCGAATTTTTACGGTGTATTTGTTTTGTAATATAGTGAGTACTGATGTTT 2742
Query 2750 T--AAA-GCAAATCATGAATCAGAATGTGATTATAT 2782
| ||| |||||||||||||||||||||||||||||
Sbjct 2743 TTTAAAAGCAAATCATGAATCAGAATGTGATTATAT 2778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105243346935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5