BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54390.1
Length=1588
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495519 jgi|Araly1|495519|fgenesh2_kg.8__1335__AT5G54390.1 2316 0.0
> Ahg495519 jgi|Araly1|495519|fgenesh2_kg.8__1335__AT5G54390.1
Length=1550
Score = 2316 bits (1254), Expect = 0.0
Identities = 1462/1562 (94%), Gaps = 15/1562 (1%)
Strand=Plus/Plus
Query 21 aaaaaaaGGAGAGGAGAAGAAGCAGTGGAGAGAGAGCATGTGAATA-AAAAGCGTGAAGC 79
||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1 AAACAAAGGAGAGGAGAAGAAGCAGTGGAGAGAGAGCATGTGAA-AGAAAAGCGTGAAGC 59
Query 80 TTTTTGATATCTCTTTCTCTTCCTCTTCCTTTCTCCTCCGATAGATTTCGCCGGCGATGG 139
||||||||| |||||||||||||| || ||||||||| |||||||||||||||||
Sbjct 60 TTTTTGATA------TCTCTTCCTCTTCC-TT-TCCTCCGATCGATTTCGCCGGCGATGG 111
Query 140 CGGTGGACTCCTTAGAAACGGAGATTGACACGGCGGTGCGTGTTGTCCACCTCGCTTCTT 199
|||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 112 TGGTGGAATCCTTAGAAACGGAGATTGACACGGCGGTGCGTGTGGTTCACCTCGCTTCTT 171
Query 200 CTCTCTGTGTTAAAGTTCAAGAGAAGCTTCATCTTCCTAACGGTGGTCACGTTAAGTCTA 259
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 172 CTCTCTGTGTTAAAGTTCAAGAGAAGCTTCATCTTCCTAATGGTGGTCACGTTAAGTCTA 231
Query 260 AAGACGATGATTCCCCTGTCACCGTCGCTGATTTTGGTGTACAAGCAATTGTGAGCTGGG 319
||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 232 AAGACGATGATTCTCCTGTCACCGTCGCAGATTTTGGTGTTCAAGCAATTGTGAGCTGGG 291
Query 320 TTTTAGCTGAAGTGTTTGGTGATCAAAACCTTTCAATTGTTGCTGAAGAAGACACTGAGA 379
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TTTTAGCTGAAGTTTTTGGTGATCAAAACCTTTCAATTGTTGCTGAAGAAGACACTGAGA 351
Query 380 CACTCTCTGAGGCTGATTCTTTAGGTCTTTTAGGAGCTGTGTCGAATGCGGTTAATGAAG 439
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 352 CTCTCTCAGAGGCTGATTCTTTAGGTCTTTTAGGAGCTGTGTCGAATGCGGTTAATGATG 411
Query 440 CATTGTCCGAAGCTCAGAACTACGGGCTTCCGAAGCCAGTTAAGCCATTGGGGTCTAGTG 499
||||||| ||||||| ||| ||||||||||||||||||| ||| |||||||| || | ||
Sbjct 412 CATTGTCTGAAGCTCCGAAATACGGGCTTCCGAAGCCAGATAAACCATTGGGATCAACTG 471
Query 500 AAATTCTTAAGGCTATTAGTAGATGTAACTCTGTTGGAGGACCTAAAGGAAGGCATTGGG 559
|||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||
Sbjct 472 AAATTCTTAAGGCTATTAGTCGATGTAACTCCGTTGGAGGGCCTAAAGGAAGGCATTGGG 531
Query 560 TTCTTGATCCTGTTGATGGAACGTTAGGGTTTGTTCGTGGGGATCAGTATGCTGTTGCTT 619
| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 532 TGCTTGATCCTGTTGATGGAACATTAGGATTTGTTCGTGGGGATCAGTATGCTGTTGCTT 591
Query 620 TAGCTTTGATAGAGAATGGTAAAGTTCTTTTGGGTGTACTAGGATGTCCTAATTATCCGG 679
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 592 TAGCTTTGATAGAGAATGGTAAAGTTCTTTTGGGGGTGCTAGGATGTCCTAATTATCCGG 651
Query 680 TTAAGAAAGAATGTTTAAGTAATGGTTGTAACCAAGCTATGAAGACGAAAGCTGTTGCTG 739
||||||||||||| |||||||||||||| ||||||||||||||||||||| |||| | |
Sbjct 652 TTAAGAAAGAATGCTTAAGTAATGGTTGCAACCAAGCTATGAAGACGAAATCTGTACCGG 711
Query 740 GTTCAGTATCGAAAGGATGTGTTATGTATGCAAAGAGAGGTAGTGGTCAAGCTTGGATGC 799
| |||||||||||||||||||| |||||||||||| |||| ||||||||||| |||||||
Sbjct 712 GGTCAGTATCGAAAGGATGTGTCATGTATGCAAAGCGAGGAAGTGGTCAAGCGTGGATGC 771
Query 800 AACCTTTGATCGTTGGAGGAATACCAGAATCTGCAACACTTCTTAAGGTTTCTTCAGTTG 859
|||| ||||| |||| |||||| || || ||||||||||| ||||||||||| ||||| |
Sbjct 772 AACCGTTGATTGTTGCAGGAATCCCTGACTCTGCAACACTCCTTAAGGTTTCCTCAGTCG 831
Query 860 ATGATCCGGTTTTAGCTACAGTTTGTGAGCCAGTAGAGAGAGCAAACTCAAACCACTTGT 919
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 832 ATGATCCGGCTTTAGCTACGGTTTGTGAGCCAGTAGAGAGAGCAAACTCAAACCACTTGT 891
Query 920 TCACTGCAGGACTTGCCAATAGCATGGGAGTTAGAAAGCAGCCTATGCGAGTGTATAGCA 979
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 892 TCACCGCAGGACTTGCCAATAGCATGGGAGTTAGAAAGCAGCCGATGCGAGTGTATAGCA 951
Query 980 TGGTGAAATATGCAGCGATTGCACGTGGAGACGCTGAAGTGTTTATGAAGTTTGCACAGT 1039
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 952 TGGTTAAATATGCAGCGATTGCACGTGGAGACGCTGAAGTGTTCATGAAGTTTGCACAGT 1011
Query 1040 CAAGTTACAAAGAGAAGATATGGGATCACGCAGCTGGAGTTGTTATTGTGGAAGAAGCTG 1099
| ||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1012 CGAGTTACAAAGAAAAGATATGGGATCATGCTGCTGGAGTTGTTATTGTGGAAGAAGCTG 1071
Query 1100 GTGGTGTGGTGACTGATGCGGGAGGGAGAAACTTAGACTTCTCGAAAGGTGTTTACTTGG 1159
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1072 GTGGTGTGGTGACTGATGCGGGCGGGAGAAACTTAGACTTCTCGAAAGGAGTTTACTTGG 1131
Query 1160 AAGGTCTTGACCGTGGAATCATCGCATGTTCTGGTCAAGTTTTACATGAGAAGATTATAG 1219
|||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1132 AAGGTCTTGATCGTGGAATCATCGCGTGTTCTGGTCAAGTTTTACATGAGAAAATTATAG 1191
Query 1220 GTGCTGTTTATGCTAGTTGGGAATCTTCCAGTCTCTGAAAAAGCTTATCCACAATCCGT- 1278
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1192 GTGCTGTTTATGCTAGTTGGGAATCTTCCAGTCTCTGAAAAAGCTTGTCCACAATCC-TC 1250
Query 1279 AGTTTGGTGCAGCATCATCGAGCCAAAGCAAAGGAGGAACAAGGGCCATTACGGTTTAGG 1338
||||||||||||||||||| |||||||||||||| ||||||||||||| | |||||||||
Sbjct 1251 AGTTTGGTGCAGCATCATCAAGCCAAAGCAAAGGGGGAACAAGGGCCACTCCGGTTTAGG 1310
Query 1339 ATGAGCAAGGGCCAGTTTCAATGAATGTGAATGGCGGAGAAGTAAATATAGTCGAGGAAG 1398
|||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 1311 ATGAGCAAGGGCCAGTCTCTCTGAATGTGAATGGCGGAGAAGTAAATATAGTCAAGGAAG 1370
Query 1399 CAGCGGTAAAAGTAAGAATCTAGTTTATTTACCTATCTAAGAGTAATAAAGCTGCTGCAT 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 CAGCGGTAAAAGTAAGAATCTAGTTTATTTACCTATCTAAGAGTAATAAAGCTGCTGCAT 1430
Query 1459 TTCACGAACCCTTATGTTCTATGATCTTTAATGGATGATATCATTTTTAATCTTCGTCCT 1518
|||||||||| ||||||||||| ||||| |||| | |||||||||||||||||||||||
Sbjct 1431 TTCACGAACCTTTATGTTCTATAATCTT-AATGAACAATATCATTTTTAATCTTCGTCCT 1489
Query 1519 GTAATAATT-CACCTTCAAAACGCGGATTATACATGTCGTTTTCCTGACAAAAGACAAAA 1577
||||| || | ||||||||||||||||||| ||||||||||| |||||||||| ||||
Sbjct 1490 GTAATTTTTTCCCCTTCAAAACGCGGATTATGGATGTCGTTTTC-TGACAAAAGATAAAA 1548
Query 1578 AT 1579
||
Sbjct 1549 AT 1550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59496962690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5