BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54400.1
Length=1154
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917125 jgi|Araly1|917125|Al_scaffold_0008_1876 1485 0.0
> Ahg917125 jgi|Araly1|917125|Al_scaffold_0008_1876
Length=879
Score = 1485 bits (804), Expect = 0.0
Identities = 855/880 (97%), Gaps = 2/880 (0%)
Strand=Plus/Plus
Query 148 ATGGGGAAGACAACGAATGGAACAAGAGACTGGGCTCAGATCTACGCAATCTACGGGATC 207
||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 1 ATGGGGAAGACAACGAATGGAACAAGAGATTGGGCTCAGATCTACGCGATTTACGGGATC 60
Query 208 GAGCAAAAACACACACTCATCTTCCTGATAC-TCAACGCGATTGCTTTCTCTATACTCTC 266
|||||||||||||||||||||||||| || | |||||||||||||||||||| | |||||
Sbjct 61 GAGCAAAAACACACACTCATCTTCCTCAT-CATCAACGCGATTGCTTTCTCTGTTCTCTC 119
Query 267 CACCGTCTTTGTCATCTACTTTAACCCGATCTGCGTCTTCTTTCAATCGTTTCTCTTCTC 326
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 120 CACCGTCTTTTTCATCTACTTTAACCCGATCTGCGTCCTCTTTCAATCGTTTCTCTTCTC 179
Query 327 TAACGCCGCGGCAGCTAGATTCTCGGCTGGATTCTTTGGAGCTGTTACGGCGCTTTCCGC 386
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 180 TAACGCCGCCGCAGCTAGATTCTCGGCTGGATTCTTTGGAGCTGTTACGGCGATTTCCGC 239
Query 387 CGTGTGTTTGTTTTTCGCGGCGGCGAAttttttttACTCTGCTGTGCCGCTTAGGTATGA 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CGTGTGTTTGTTTTTCGCGGCGGCGAATTTTTTTTACTCTGCTGTGCCGCTTAGGTATGA 299
Query 447 GATGGCGCAGAGGATGGTTGGATCTGTTGGAGATTGGTCGAGTGTGAAGACCGCTCTTGA 506
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 300 GATGGCGCAGAGGATGGTTGGATCTGTTGGAGATTGGTCGAGTGTGAAGACGGCTCTTGA 359
Query 507 CTTAGGTTGTGGTCGTGGGATTTTGCTTAATGCCGTTGCGACGCAGCTCAAGAAAACTGG 566
||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 360 TTTAGGATGTGGTCGTGGGATTTTGCTTAATGCGGTGGCGACGCAGCTCAAGAAAACTGG 419
Query 567 TAGCTCGGGTCGGGTCGTTGGGTTGGATCGGTCCATGACTACTACTCTCTCTACTCTACG 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TAGCTCGGGTCGGGTCGTTGGGTTGGATCGGTCCATGACTACTACTCTCTCTACTCTACG 479
Query 627 TACAGCTCACATCGAAGGAGTACAAGAGTACGTGACATGCCGTGAAGGAGACGTAAGAAG 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TACAGCTCACATCGAAGGAGTACAAGAGTACGTGACATGCCGTGAAGGAGACGTAAGAAG 539
Query 687 GCTTCCGTTTAGTGATAACTACTTTGACGTGGTGGTTTCTGCAGTGTTTCTCCATACCAT 746
||||||||||||||||||||||||||||||||||||||| || |||||||| |||||| |
Sbjct 540 GCTTCCGTTTAGTGATAACTACTTTGACGTGGTGGTTTCAGCCGTGTTTCTTCATACCGT 599
Query 747 TGGGAAAGAATACGGTCAGAAGACGGTGGAGGCGGCGGCAGAGAGGATGAGAGTACTTGG 806
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 TGGGAAAGAATACGGTCAGAAGACGGTGGAGGCAGCGGCAGAGAGGATGAGAGTACTTGG 659
Query 807 AGAAGCGGTGAGAGTGTTGAAACCAGGAGGAGTTGGAGTGGTTTGGGACTTAGTGCACGT 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGAAGCGGTGAGAGTGTTGAAACCAGGAGGAGTTGGAGTGGTTTGGGACTTAGTGCACGT 719
Query 867 GCCGGAGTATGTGCGGCGGTTACAGGAGCTGAGGATGGAGGAGATTAGAGTTTCGAAACG 926
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 720 GCCGGAGTATGTGCGGCGGTTACAGGAGCTGAGGATGGAGGAGATTAGGGTTTCGAAGCG 779
Query 927 AGTCACTGCGTTTATGGTTAAGAGCCATATGGTCTCGTTTAAGAAACCTAGTCAGCATTT 986
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 780 AGTCACTGCGTTTATGGTTAAGAGCCATATGGTCTCGTTTAAAAAACCTAGTCAGCATTT 839
Query 987 TGTGGGATCTGGTGAAGTACGTTTAGATTGGAGATGTTAA 1026
||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGTGGGATCTGGTGAAGTACGTTTAGATTGGAGATGTTAA 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43040773293
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5