BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G54400.1 Length=1154 Score E Sequences producing significant alignments: (Bits) Value Ahg917125 jgi|Araly1|917125|Al_scaffold_0008_1876 1485 0.0 > Ahg917125 jgi|Araly1|917125|Al_scaffold_0008_1876 Length=879 Score = 1485 bits (804), Expect = 0.0 Identities = 855/880 (97%), Gaps = 2/880 (0%) Strand=Plus/Plus Query 148 ATGGGGAAGACAACGAATGGAACAAGAGACTGGGCTCAGATCTACGCAATCTACGGGATC 207 ||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| Sbjct 1 ATGGGGAAGACAACGAATGGAACAAGAGATTGGGCTCAGATCTACGCGATTTACGGGATC 60 Query 208 GAGCAAAAACACACACTCATCTTCCTGATAC-TCAACGCGATTGCTTTCTCTATACTCTC 266 |||||||||||||||||||||||||| || | |||||||||||||||||||| | ||||| Sbjct 61 GAGCAAAAACACACACTCATCTTCCTCAT-CATCAACGCGATTGCTTTCTCTGTTCTCTC 119 Query 267 CACCGTCTTTGTCATCTACTTTAACCCGATCTGCGTCTTCTTTCAATCGTTTCTCTTCTC 326 |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 120 CACCGTCTTTTTCATCTACTTTAACCCGATCTGCGTCCTCTTTCAATCGTTTCTCTTCTC 179 Query 327 TAACGCCGCGGCAGCTAGATTCTCGGCTGGATTCTTTGGAGCTGTTACGGCGCTTTCCGC 386 ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 180 TAACGCCGCCGCAGCTAGATTCTCGGCTGGATTCTTTGGAGCTGTTACGGCGATTTCCGC 239 Query 387 CGTGTGTTTGTTTTTCGCGGCGGCGAAttttttttACTCTGCTGTGCCGCTTAGGTATGA 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 CGTGTGTTTGTTTTTCGCGGCGGCGAATTTTTTTTACTCTGCTGTGCCGCTTAGGTATGA 299 Query 447 GATGGCGCAGAGGATGGTTGGATCTGTTGGAGATTGGTCGAGTGTGAAGACCGCTCTTGA 506 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 300 GATGGCGCAGAGGATGGTTGGATCTGTTGGAGATTGGTCGAGTGTGAAGACGGCTCTTGA 359 Query 507 CTTAGGTTGTGGTCGTGGGATTTTGCTTAATGCCGTTGCGACGCAGCTCAAGAAAACTGG 566 ||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 360 TTTAGGATGTGGTCGTGGGATTTTGCTTAATGCGGTGGCGACGCAGCTCAAGAAAACTGG 419 Query 567 TAGCTCGGGTCGGGTCGTTGGGTTGGATCGGTCCATGACTACTACTCTCTCTACTCTACG 626 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 TAGCTCGGGTCGGGTCGTTGGGTTGGATCGGTCCATGACTACTACTCTCTCTACTCTACG 479 Query 627 TACAGCTCACATCGAAGGAGTACAAGAGTACGTGACATGCCGTGAAGGAGACGTAAGAAG 686 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 TACAGCTCACATCGAAGGAGTACAAGAGTACGTGACATGCCGTGAAGGAGACGTAAGAAG 539 Query 687 GCTTCCGTTTAGTGATAACTACTTTGACGTGGTGGTTTCTGCAGTGTTTCTCCATACCAT 746 ||||||||||||||||||||||||||||||||||||||| || |||||||| |||||| | Sbjct 540 GCTTCCGTTTAGTGATAACTACTTTGACGTGGTGGTTTCAGCCGTGTTTCTTCATACCGT 599 Query 747 TGGGAAAGAATACGGTCAGAAGACGGTGGAGGCGGCGGCAGAGAGGATGAGAGTACTTGG 806 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 600 TGGGAAAGAATACGGTCAGAAGACGGTGGAGGCAGCGGCAGAGAGGATGAGAGTACTTGG 659 Query 807 AGAAGCGGTGAGAGTGTTGAAACCAGGAGGAGTTGGAGTGGTTTGGGACTTAGTGCACGT 866 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 AGAAGCGGTGAGAGTGTTGAAACCAGGAGGAGTTGGAGTGGTTTGGGACTTAGTGCACGT 719 Query 867 GCCGGAGTATGTGCGGCGGTTACAGGAGCTGAGGATGGAGGAGATTAGAGTTTCGAAACG 926 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 720 GCCGGAGTATGTGCGGCGGTTACAGGAGCTGAGGATGGAGGAGATTAGGGTTTCGAAGCG 779 Query 927 AGTCACTGCGTTTATGGTTAAGAGCCATATGGTCTCGTTTAAGAAACCTAGTCAGCATTT 986 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 780 AGTCACTGCGTTTATGGTTAAGAGCCATATGGTCTCGTTTAAAAAACCTAGTCAGCATTT 839 Query 987 TGTGGGATCTGGTGAAGTACGTTTAGATTGGAGATGTTAA 1026 |||||||||||||||||||||||||||||||||||||||| Sbjct 840 TGTGGGATCTGGTGAAGTACGTTTAGATTGGAGATGTTAA 879 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43040773293 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5