BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54430.1
Length=1101
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950087 jgi|Araly1|950087|scaffold_801974.1 1186 0.0
Ahg889422 jgi|Araly1|889422|Al_scaffold_0007_1408 582 1e-165
Ahg932872 jgi|Araly1|932872|scaffold_400860.1 239 4e-62
> Ahg950087 jgi|Araly1|950087|scaffold_801974.1
Length=786
Score = 1186 bits (642), Expect = 0.0
Identities = 716/750 (95%), Gaps = 12/750 (2%)
Strand=Plus/Plus
Query 46 AACAACATCTGaaaaaaaTCATGAATCCAGCAGATTCCGATCATCCACAGCTTCCAAACA 105
|||||||||||||||||||||||||| | |||||||||||||||| |||||||| ||||
Sbjct 1 AACAACATCTGAAAAAAATCATGAAT-C--CAGATTCCGATCATCCTCAGCTTCCCAACA 57
Query 106 TCAAGatccatcaccctccatctccacgtcactctcaccatcaccactcctcatctactc 165
|||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 58 TCAAGATCCATCACCCTCCATCTCCACGTCACTCTCACCACCACCACTCCTCTTCCACTC 117
Query 166 cctcctccGCCGCAACTCCAACACCAACCGCCGGAGCTCGTCGTAAAATCGGAGTCGCAG 225
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 118 CCTCCTCCGCCGCAACTCCAACTCCAACTGCCGGAGCTCGTCGTAAAATCGGAGTCGCCG 177
Query 226 TTGATCTCTCCGAAGAAAGCTCTTTCGCCGTTCGTTGGGCTGTAGATCACTACATCCGTC 285
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 178 TTGATCTCTCTGAAGAAAGCTCCTTCGCCGTTCGTTGGGCTGTAGATCACTACATCCGTC 237
Query 286 CCGGAGACGCCGTTGTTCTTCTCCACGTTTCTCCAACCTCCGTCCTCTTCGGTGCCGATT 345
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 238 CCGGAGACGCCGTTGTTCTTCTCCACGTTTCTCCAACTTCCGTCCTCTTCGGTGCCGATT 297
Query 346 GGGGACCTCTCCCTCTGAAAACTCAA----AT-T-GAAGATCCAAACGCTCAACCTCAAC 399
|||||||||||||||||||||||||| | | |||||||||||||||||| |||| |
Sbjct 298 GGGGACCTCTCCCTCTGAAAACTCAACCTTCTGTGGAAGATCCAAACGCTCAATCTCAGC 357
Query 400 CTAGTCAAGAGGATTTTGATGCTTTTACTTCAACAAAAGTTGCGGATCTAGCTAAACCGT 459
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 358 CTAGTCAAGAAGATTTTGATGCTTTTACTTCAACAAAAGTTGCGGATCTAGCTAAGCCGT 417
Query 460 TGAAGGAGTTAGGGTTTCCTTATAAGATCCATATAGTGAAAGATCATGATATGAGAGAGA 519
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 418 TGAAGGAATTAGGGTTTCCTTATAAGATCCATATAGTGAAAGATCATGATATGAGGGAGA 477
Query 520 GATTATGTCTTGAGATTGAGAGGCTTGGTCTTAGTGCTGTGATTATGGGAAGTAGAGGTT 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GATTATGTCTTGAGATTGAGAGGCTTGGTCTTAGTGCTGTGATTATGGGAAGTAGAGGTT 537
Query 580 TTGGTGCTGAGaaaaaaaGAGGAAGTGATGGCAAGCTTGGCTCTGTTAGTGATTACTGTG 639
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TTGGTGCTGAGAAAA---GAGGAAGTGATGGCAAGCTTGGCTCTGTTAGTGATTACTGTG 594
Query 640 TTCATCACTGTGTTTGTCCTGTTGTTGTGGTTAGATATCCTGATGATCGTGATGGACCTG 699
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TTCATCACTGTGTTTGTCCCGTTGTTGTGGTTAGATATCCTGATGATCGTGATGGACCTG 654
Query 700 TGCCTATTGTTACTGTCAAGTCTGGTGGAGATGATGATGGAGATGTTGTTGCTGCTTCTG 759
| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 655 TTCCTGTTGTTACTGTCAAGTCTGGTGGAGATGATGATGAAGATGTTGTTGCTGCTTCTG 714
Query 760 CTTCTGCTCATCATGAACACATCAAAGATG 789
||||||||||||||||||||||||||||||
Sbjct 715 CTTCTGCTCATCATGAACACATCAAAGATG 744
> Ahg889422 jgi|Araly1|889422|Al_scaffold_0007_1408
Length=795
Score = 582 bits (315), Expect = 1e-165
Identities = 541/645 (84%), Gaps = 36/645 (6%)
Strand=Plus/Plus
Query 76 CAGATTCCGATCATCCACAGCTTCCAAACATCAAGatccatcaccctccatctccacgtc 135
||||||||||| |||| || || || |||||||||||||| || ||| ||||||| ||||
Sbjct 8 CAGATTCCGATTATCCTCATCTCCCTAACATCAAGATCCACCATCCTTCATCTCCTCGTC 67
Query 136 actctcaccatcaccactcctcatctactccctcctccGCCGCAACTCCAACACCAACCG 195
||||||| | |||||||| || || ||| ||| |||||||| ||||| || |||||||
Sbjct 68 ACTCTCA-C--CACCACTCTTCCTCCACT-CCT--TCCGCCGCTACTCCTACCCCAACCG 121
Query 196 CCGGAGCTCGTCGTAAAATCGGAGTCGCAGTTGATCTCTCCGAAGAAAGCTCTTTCGCCG 255
|||| ||||| ||||| ||||||||||| ||||| ||||||||||||||| ||||||| |
Sbjct 122 CCGGTGCTCGCCGTAAGATCGGAGTCGCCGTTGACCTCTCCGAAGAAAGCGCTTTCGCTG 181
Query 256 TTCGTTGGGCTGTAGATCACTACATCCGTCCCGGAGACGCCGTTGTTC-TTCTCCACGTT 314
|||| |||||||| ||||| |||||||||||||| ||||| || | || |||||||||||
Sbjct 182 TTCGCTGGGCTGTCGATCATTACATCCGTCCCGGTGACGCGGTCG-TCATTCTCCACGTT 240
Query 315 TCTCCAACCTCCGTCCTCTTCGGTGCCGATTGGGGACCTCTCCCTCT-GAAA-----ACT 368
|||||||||||||| |||||||| |||||||||||||||||||| || ||| ||
Sbjct 241 TCTCCAACCTCCGTTCTCTTCGGCGCCGATTGGGGACCTCTCCCACTCCAAACTCCTCCT 300
Query 369 -CAAATT-----G--A-AGAT-CCAAACGCTCAACCTCAACCTAGTCAAGAGGATTTTGA 418
| || | | ||| || || |||||||| |||||||||| || ||||| ||
Sbjct 301 CCTCCTTCCGCCGCTACCGATCCCGAA-GCTCAACCGAAACCTAGTCAGGAAGATTTCGA 359
Query 419 TGCTTTTACTTCAACAAAAGTTGCGGATCTAGCTAAACCGTTGAAGG-AGTTAGGGTTTC 477
||| |||||||| | ||||| ||||||||||| || || ||||||| || | ||||| |
Sbjct 360 TGCGTTTACTTCTTCCAAAGTAGCGGATCTAGCGAAGCCATTGAAGGAAGCT-GGGTTCC 418
Query 478 CTTATAAGATCCATATAGTGAAAGATCATGATATGAGAGAGA-GATTATGTCTT-GAGAT 535
|| ||||||||||||||||||||||||| ||||||||||||| | || ||| || ||||
Sbjct 419 CTCATAAGATCCATATAGTGAAAGATCACGATATGAGAGAGAGGCTT-TGT-TTAGAGAC 476
Query 536 TGAGA-GGCTTGGTCTTAGTGCTGTGATTATGGGAAGTAGAGGTTTTGGTGCTGAGaaaa 594
||| | ||||| ||| || |||||||| |||||||| ||||| |||||||||||| |
Sbjct 477 TGA-ACGGCTTAATCTAAGCGCTGTGATAATGGGAAGCAGAGGATTTGGTGCTGAG---A 532
Query 595 aaaGAGGAAGTGATGGCAAGCTTGGCTCTGTTAGTGATTACTGTGTTCATCACTGTGTTT 654
| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 533 AGAGAGGAAGTGATGGCAAGCTTGGCTCTGTTAGTGATTATTGTGTTCATCATTGTGTTT 592
Query 655 GTCCTGTTGTTGTGGTTAGATATCCTGATGATCGTGATGGACCTG 699
|||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 593 GTCCTGTTGTTGTGGTTAGATATCCTGATGATCGTGATGGTCCTG 637
> Ahg932872 jgi|Araly1|932872|scaffold_400860.1
Length=267
Score = 239 bits (129), Expect = 4e-62
Identities = 147/156 (94%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 357 CCTCTGAAAACTCAAATTGAAGATCCAAACGCTCAACCTCAACCTAGTCAAGAGGATTTT 416
||||| | ||||||||||||||||||||||||||| |||| |||||||||||| |||||
Sbjct 79 CCTCTCAGAACTCAAATTGAAGATCCAAACGCTCAGTCTCAGCCTAGTCAAGAGCATTTT 138
Query 417 GATGCTTTTACTTCAACAAAAGTTGCGGATCTAGCTAAACCGTTGAAGGAGTTAGGGTTT 476
||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 139 GATGCTTTTACTTCAACCAAAGTTGCGGATCTAGCTAAGCCGTTGAAGGAATTAGGGTTT 198
Query 477 CCTTATAAGATCCATATAGTGAAAGATCATGATATG 512
||||||||||||||||||||||||||||||||||||
Sbjct 199 CCTTATAAGATCCATATAGTGAAAGATCATGATATG 234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41020258692
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5