BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54450.1
Length=1107
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495525 jgi|Araly1|495525|fgenesh2_kg.8__1341__AT5G54450.1 885 0.0
Ahg495522 jgi|Araly1|495522|fgenesh2_kg.8__1338__AT5G54320.1 697 0.0
> Ahg495525 jgi|Araly1|495525|fgenesh2_kg.8__1341__AT5G54450.1
Length=1071
Score = 885 bits (479), Expect = 0.0
Identities = 572/613 (93%), Gaps = 22/613 (4%)
Strand=Plus/Plus
Query 1 ATGTCTCTGCTTCTCAGACGGCTGTCGAAGCTCTGCCTTTCGAAACCTGCGTCCGTTAGG 60
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||
Sbjct 1 ATGTCTCTGCTTCTCAGACGGCTGTCGGAGCTTTGCCTTTCGAAACCTGCGTCCGTGAGG 60
Query 61 TCTTCTCTACTTCTCTCTAATGGCTTCTCATCATCGTCTTTGTTGCAAAGCCCTCCTTGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTTCTCTACTTCTCTCTAATGGCTTCTCATCATCGTCTTTGTTGCAAAGCCCTCCTTGT 120
Query 121 AACATAATCGGCGCTCGTCGTTGTGGACCGTATTTTGGAACACTCATCATTTTTAACGCT 180
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 ACCATAATCGGCGCTCGTCGTTGTGGACCGTATTTTGGAAGACTCATCATTTTTAACGCT 180
Query 181 AATGAAGATGACTCCACTTATTTGGAAAAGAAGGTGCC--T--A--T-G--G--A--G-- 225
|||||||||||||||||||||||||||||||||||||| | | | | | | |
Sbjct 181 AATGAAGATGACTCCACTTATTTGGAAAAGAAGGTGCCTATGGAGTTGGTAGCTAGTGAT 240
Query 226 -C--TGGTGGTGTATAATGATGCAACTGTAACAATAGGGGCATCTCATGGATGGGTAGCT 282
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCAATGGTGGTGTATAATAATGCAACTGTAACAATAGGGGCATCTCATGGATGGGTAGCT 300
Query 283 ACTGTGAACAAGGACGACGGCATTCTGCGTCTTCGAGATGATCTAAACCCAT-ATGCAT- 340
|||||||||||||||||||||||| ||||||| ||||||||| | ||||| | ||| |
Sbjct 301 ACTGTGAACAAGGACGACGGCATTATGCGTCTCCGAGATGATTTGAACCC-TGCTGCGTC 359
Query 341 CGTATACAGATCCGAGAAGCATTCGCCTGCCTCCTCTTGTTACTCTGCCTCATTGTCAAA 400
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 360 CG-ATACAGATCCGAGAAGCATTCGCCTGCCTCCTCTTGTCACTCTGCCTCATTGCCAAA 418
Query 401 CCCAAATCATCACCAACGTGGCCATGTCATGTTCTTCTCCCGAGGATGAAGACTGTGTTG 460
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 419 CCCAGATCATCACCAACGTGTCCATGTCATGTTCTTCTCCCGAGGATGAAGACTGTGTTG 478
Query 461 TTGCTGTCAAGTTCTTGGGACCTCAGCTCAGCTTTTGCAGACCCGCTCGAAGTCACTCCG 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTGCTGTCAAGTTCTTGGGACCTCAGCTCAGCTTTTGCAGACCCGCTCGAAGTCACTCCG 538
Query 521 ATTGGACCAACATCAGAATCGAAAACCCCTGCTTCTTCTCCTCCCGTGTCATGTTTTCCA 580
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AGTGGATCAACATCAGAATCGAAAACCCCTGCTTCTTCTCCTCCCGTGTCATGTTTTCCA 598
Query 581 AGAAATACGACAT 593
||||| |||||||
Sbjct 599 AGAAAGACGACAT 611
Score = 784 bits (424), Expect = 0.0
Identities = 448/460 (97%), Gaps = 0/460 (0%)
Strand=Plus/Plus
Query 648 ACACAAGCACGATCCCGTATTGCAGAGATTGCGATTCCGAAAACTCCCCGAGCTTCCCAA 707
||||||||||||||||| ||||||||||||||||||||||||||||||| || || ||||
Sbjct 612 ACACAAGCACGATCCCGAATTGCAGAGATTGCGATTCCGAAAACTCCCCAAGTTTTCCAA 671
Query 708 GACCAAACGGGAGCTTTTGGATTTTTGCTGCATCACCGAACACTTAGTGGAGTCCCCAGC 767
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 672 GACCAAACGGGAGCTTTTGGATTCCTGCTGCATCACCGAACACTTAGTGGAGTCCCCAGC 731
Query 768 TGGTGAAACATTCTTGGTTAAGTGGTACAGGAAAACTGCACCCGCACGCAAGACTATCAA 827
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 732 TGGTGAAACCTTCTTGGTTAAGTGGTACAGGAAAACTGCACCCGCACCCAAGACTATCAA 791
Query 828 TGGTATGGTGAAAATGCAAACAAAAACTGTGATGGTGTTCAAACTTGATGAAAAAGGAAA 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 TGGTATGGTGAAAATGCAAACAAAAACTGTGATGGTGTTCAAACTTGATGAAAAAGGAAA 851
Query 888 CGCTGTATACAGTCAAGACATTGGGGATCTCTACATTTTCCTCTCAAAGTCTGAACCTTT 947
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 CGCTGTTTACACTCAAGACATTGGGGATCTCTACATTTTCCTCTCAAAGTCTGAACCTTT 911
Query 948 CTGTGTCCCTGCTAGCTCTTTTCCCGGCATGTCCTCTAACCGCGTCGAGATCTTGGATGT 1007
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 912 CTGTGTCCCTGCTAGCTCCTTTCCCGGCATGTCCTCTAACCGCGTCGAGATCTTGGATGT 971
Query 1008 CAACGAAAACGTTGTTGTCGATCTGTCTGATTACTCCATGACCGGTGGAAATGCTCGTTT 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 CAACGAAAACGTTGTTGTCGATCTGTCTGATTACTCCATGACCGGTGGAAATGCTCGTTT 1031
Query 1068 TGGTGCACCTTACAGTATTCCACCCCAAAAACTAGACTAG 1107
|||||||||||||||||||||||||||||||||||||||
Sbjct 1032 CGGTGCACCTTACAGTATTCCACCCCAAAAACTAGACTAG 1071
> Ahg495522 jgi|Araly1|495522|fgenesh2_kg.8__1338__AT5G54320.1
Length=1110
Score = 697 bits (377), Expect = 0.0
Identities = 780/968 (81%), Gaps = 53/968 (5%)
Strand=Plus/Plus
Query 42 GAAACCTGCGTCCGTTAG-GTCTTCT-CTACTTCTCTCTAATGGCT-TCTCATCATCGTC 98
|||||||| || || || | | ||| || |||||||||||| | | || |||||| ||
Sbjct 48 GAAACCTGTGTTGGTAAGAG-CATCTCCT-CTTCTCTCTAAT-GATGGCTTATCATCTTC 104
Query 99 TTTGTTGCAAAGC-CCTCCTTGTAACATAATCGGCGCTCGTCGTTGT-G--GAC---CGT 151
|||| |||||| | ||||||||| ||| || ||||| |||||| | ||| ||
Sbjct 105 TTTGCTGCAAA-CTCCTCCTTGTTTCATCGTCAGCGCTAAACGTTGTGGAAGACTTGCGA 163
Query 152 ATTTTGGAACACTCATCATTTTTAA-CGCTAATGAAGATGACTCCACTTATTTGGAAAAG 210
| |||| |||| | ||||| || | || |||||||||||| ||||| |||||| |||
Sbjct 164 AAGAGGGAAAACTCGTGATTTTGAATC-CTTATGAAGATGACTGCACTTCTTTGGATAAG 222
Query 211 AAGGTGCCTATGGAGCTGGTGGTGTATAATGATGCAAC-TGTAACAATAGGGGCATCTCA 269
||||||||||| | || | || ||||| || ||| ||| |||||| || || |||| ||
Sbjct 223 AAGGTGCCTAT-G-GC-GTTGTTGTATGATAATG-AACTTGTAACCATCGGTTCATCCCA 278
Query 270 TGGATGGGTAGCTACTGTGA-ACAAGGACGACGGCA-TTCTGCGTCTTCGAGATGATCTA 327
||| ||| |||||||| ||| | |||||||||| | | |||||||| | ||| ||||||
Sbjct 279 TGGCTGGATAGCTACTTTGAGTC-AGGACGACGG-ACTACTGCGTCTCCAAGACGATCTA 336
Query 328 AACCC-ATATGCATCGTATACAGATCCGAGAA-GCATTCGCCTGCCTCCTCTTGTTACTC 385
||||| | ||||||| ||||| | |||| || |||||| ||||||||||||||| ||||
Sbjct 337 AACCCGGT-TGCATCGGATACAAACCCGA-AACGCATTCCCCTGCCTCCTCTTGTAACTC 394
Query 386 TGCCTCATTGTCAAACCCAAATCATCACCAACGTGGCCA-TGTCATGTTCTTCTCCCGAG 444
| |||||||| ||||| |||||| | ||||| || | || |||| | |||||||| |||
Sbjct 395 TCCCTCATTGCCAAACTCAAATCGTTACCAATGT-GTCATTGTCCTCATCTTCTCCTGAG 453
Query 445 GATGAAGACTGTGTTGTTGCTGTCAAGTTCTTGGGACCTCAGCTCAGCTTTTGCAGACCC 504
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 454 GATGAAGACTGTGTTGTGGCTGTCAAGTTTTTGGGACCTCAGCTCAGCTTTTGCAGACCG 513
Query 505 GCTCGAAGTCACTCCGATTGGACCAACATCAGAATCGAAAACCCCTGCTTCTTCTCCTCC 564
|||| |||| ||||||| |||| ||||||||||||||||||||| || |||| ||| ||
Sbjct 514 GCTCAAAGTAACTCCGAGTGGATCAACATCAGAATCGAAAACCCTTGTTTCTACTCATCT 573
Query 565 CGTGTCATGTTTTCCAAGAAATACGACATGTTTCGCATTCCTGGATCTGGAGGCCACATC 624
|||||||||| ||||||||| | |||||||| ||||||| ||||||||||| ||| ||
Sbjct 574 CGTGTCATGTACTCCAAGAAAGATAACATGTTTTGCATTCCCGGATCTGGAGGACACCTC 633
Query 625 ATCGGATCATGGGATCTCCGCAGACACAAGCACGATCCCGTATTGCAGAGATTGC-GATT 683
|| ||| ||||||||||||||| ||||||||| || | | |||||| |||| | ||
Sbjct 634 ATTGGAACATGGGATCTCCGCACACACAAGCATAAT----T-T-GCAGAGTTTGCAGTTT 687
Query 684 CCGAAAAC-TCCCCGAGCTTCCCAAGACCAAACGGGAGCTTTTGGATTTTTGCTGCATCA 742
| ||||| | ||| |||| | |||||||||| | |||| |||||| ||||||| |
Sbjct 688 C--AAAACCTTCCCAAGCTGACAAAGACCAAACAGAAGCTACTGGATTCATGCTGCAAGA 745
Query 743 CCGAACACTTAGTGGAGTCCCCAGCTGGTGAAACATTCTTGGTTAAGTGGTACAGGAAAA 802
||| ||||| || ||||| |||||||||||||| ||||||||||||||||||| |||
Sbjct 746 GCGAGCACTTGGTTGAGTCACCAGCTGGTGAAACTTTCTTGGTTAAGTGGTACAAGAAGT 805
Query 803 CTGCACCCGCACGCAAGA-CTATCAATGGTATGGTGAAAATGCAAACAAAAACTGTGATG 861
|| | | |||||| | ||||| ||||| | | ||||| ||||| || || | |||
Sbjct 806 CTTCT---G---GCAAGATC-ATCAAGGGTATTGCGCAAATGAAAACACAAGCTTTAATG 858
Query 862 GTGTTCAAACTTGATGAAAAAGGAAACGCTGTATACAGTCAAGACATTGGGGATCTCTAC 921
|||||||| ||||| ||| |||||||||| || |||| |||||||||||| ||||||| |
Sbjct 859 GTGTTCAAGCTTGACGAACAAGGAAACGCGGTTTACACTCAAGACATTGGAGATCTCTGC 918
Query 922 ATTTTCCTCTCAAAGTCTGAACCTTTCTGTGTCCCTGCTAGCTCTTTTCCCGG-CATGT- 979
|||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||
Sbjct 919 ATTTTCCTCTCAAAGTCTGAACCTTTTTGTGTCCCTGCTAGCTCTTTTCCCGGAC-TGTG 977
Query 980 CCTCTAAC 987
|| |||||
Sbjct 978 CC-CTAAC 984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41248996194
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5