BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G54480.1 Length=2163 Score E Sequences producing significant alignments: (Bits) Value Ahg950090 jgi|Araly1|950090|scaffold_801977.1 2287 0.0 > Ahg950090 jgi|Araly1|950090|scaffold_801977.1 Length=2236 Score = 2287 bits (1238), Expect = 0.0 Identities = 1539/1677 (92%), Gaps = 49/1677 (3%) Strand=Plus/Plus Query 498 TGATATACTCGGTTTCTACAAAT-CCGTGTATAACATGCAGCAGTGCGAAATTATCGAA- 555 ||||||||||||||| ||| | |||||||||||| ||||||||||||| ||||| || Sbjct 548 TGATATACTCGGTTTGTAC-GGTCCCGTGTATAACACGCAGCAGTGCGAATTTATCAAAC 606 Query 556 CTGGATCATAGAGATGATGAGGTTGAGAGTGATGGATTTAGAGAAATTAGGGAGAGAGAA 615 || ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 607 CT-GATCAAAGAGATGATGAGGTTGAGAGTGATGGATTTAGAGAAGTTAGGGAGAGAGAA 665 Query 616 GGGATTCCTGATTTGGAACCTGAAAGTGATTATAATAGTCTGATAAGgaagaataaaaag 675 |||||||||||||||||||||||||||||| |||||||||| | || || | Sbjct 666 GGGATTCCTGATTTGGAACCTGAAAGTGATCATAATAGTCT--T--------AT-AAGA- 713 Query 676 aagaataaaaagaagaagaagaagaagaatgttagagaaagCTCTTCTGTTGCAAGTGAA 735 ||||| |||||||| | | |||||||| | | || ||| |||||||||||| Sbjct 714 AAGAACCAAAAGAAG-A-CA-AAGAAGAA-G--A-AG-AAG-------GTTGCAAGTGAA 758 Query 736 ATTGATAAGCGAGATGTTGAAGCGAATACTTGTAATGGTCAAGTTGCAGATGAGACTGAT 795 |||||||||| |||||||||||| || ||||||||||| | |||||||||||||||||| Sbjct 759 ATTGATAAGCAAGATGTTGAAGCAAACACTTGTAATGGAGATGTTGCAGATGAGACTGAT 818 Query 796 AATTCTAATGAAGCTTGTGCGCAAGAGACAG-AAAACACTCCAGAGATTGTTACGGAAGA 854 ||||||| || |||||| | || |||||||| |||| ||||||||||||||||| ||||| Sbjct 819 AATTCTAGTGGAGCTTGCGAGCGAGAGACAGCAAAA-ACTCCAGAGATTGTTACTGAAGA 877 Query 855 AGTGACGAGATCAGATGAGGAAGTTGAAGTAGTGGCAAGATCAGATGAGGAAGTTTCTGA 914 |||||| |||||||||||||||||||||| || | ||||||||||||||||||||||||| Sbjct 878 AGTGACAAGATCAGATGAGGAAGTTGAAGAAGAGACAAGATCAGATGAGGAAGTTTCTGA 937 Query 915 TGAAGCGTATGAGTCTTCTTCTTCTTGTTTTTCGGAATCTTCTGGTTCGGGTTTGACGGA 974 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 938 TGAAGCGTATGAGTCTTCTTCTTCTTGTTTTTCGGAATCTTCTGGTTCGGGTTTGACTGA 997 Query 975 TCTAAGGAAGGTAGTGGAAAGGATCAATAGTATATGCGGGAAAGCTGCGGGTAATAGTGA 1034 ||||||||| || || |||||||||| | ||||||||| |||||||| |||| ||||||| Sbjct 998 TCTAAGGAATGTTGTAGAAAGGATCACTCGTATATGCGAGAAAGCTGTGGGTGATAGTGA 1057 Query 1035 AGTCTCTGAGTTGCTTGAAGTAAGCAGAGTTGTTTATCATCAACCTTTAGGATCTCAATT 1094 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1058 AGTCTCTGAGTTGCTTGAAGTAAGCAGAGTTGTTCATCATCAACCTTTAGGATCTCAATT 1117 Query 1095 CAAGGGATTTGCTTCAAGAGTAATTGGTAGTTCCGGGACTACGACTCGTGATTTGGTTTT 1154 |||||||||||||||||| ||| ||||| || |||||| | |||||||||||||| |||| Sbjct 1118 CAAGGGATTTGCTTCAAGGGTACTTGGTGGTACCGGGAATTCGACTCGTGATTTGATTTT 1177 Query 1155 AAAGCGCCGTTTTCGCTTAGATGATCTCGCTGTTTCACTCTCTATGACATTAGAGAAGCT 1214 ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 1178 AAAGCGCCGTTTTCGCTTAGATGATGTTGCTGTTTCACTCTCTATGACATTAGAGAAGCT 1237 Query 1215 TTATATGTGGGAAAAGAAGCTTCACGCAGAAGTTACAGCT-GAAGAAAAGCTTAGGGTTG 1273 |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 1238 TTATATGTGGGAAAAGAAGCTTCACGCAGAAGTTACAG-TAGAAGAAAAGCTTAGGGTTT 1296 Query 1274 CTTATGAAAAAGCGTACAAGATTCTGAACAATCTTGATCAAAACGGAGCAGAATCTAGTG 1333 ||||||| |||||||||||||||||||||||||||||||||| |||||||||||| || | Sbjct 1297 CTTATGATAAAGCGTACAAGATTCTGAACAATCTTGATCAAACCGGAGCAGAATCGAGCG 1356 Query 1334 AGCTTTACGAGGCGGAAACTTTGGTTAAACTCCATTTATCTAAGGTTAATGTTTCGGTTC 1393 || ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| Sbjct 1357 AGATTTACGAGGCGGAAACTGTGGTTAAACTCTATTTATCTAAGATTAATGTTTCGGTTC 1416 Query 1394 GAGCGGTTGAATCGATTTCGATGAGAATTCATAAGATAAGAGACGAAGAGCTTTCGTTTC 1453 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1417 GAGCGGTTGAATCGATTTCCATGAGAATTCATAAGATAAGAGACGAAGAGCTTTCGTTTC 1476 Query 1454 AAGTGATTGAGATCATTAACGGATTCAAAACAATGTGGAGATTCTTGGCGAAATGTCACC 1513 | |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1477 AGGTGATTGAGATCATAAACGGATTCAAAAGAATGTGGAGATTCTTGGCGAAATGTCACC 1536 Query 1514 ATAAGCAGTTTCGAGTGATTGCGAGAAGCAAGTCTTGTGTTCACATTGTTGAAAACGGAT 1573 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1537 ATAAGCAGTTTCGAGTGATTGCGAGAAGCAAGTCTTGTGTTCACATTGTTGAAAATGGAT 1596 Query 1574 CGAGCTCCAGGAAAGCCACGCAGCAAGTCGAAAAACAGATTAGAAGATACAGAGAATCTT 1633 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1597 CGAGCTCGAGGAAAGCTACGCAGCAAGTCGAAAAACAGATTAGAAGATACAGAGAATCTT 1656 Query 1634 TGAAAGGTTACATTGATGCACACAGAGGTTTCGTTAAGCTTTTAAACGAATGGCTTAACC 1693 ||||||||||||||||| | || ||||||||||||||||| |||||||||||||||| || Sbjct 1657 TGAAAGGTTACATTGATTCTCAGAGAGGTTTCGTTAAGCTCTTAAACGAATGGCTTAGCC 1716 Query 1694 GAATCATCATGGAGGACGATGAAACCGAGA-CTGAAGCTCCTGAGATATTTAGGGTTTGC 1752 ||| |||||||||||| ||||||||||||| | || |||||||||||||||||||||||| Sbjct 1717 GAAACATCATGGAGGATGATGAAACCGAGATC-GAGGCTCCTGAGATATTTAGGGTTTGC 1775 Query 1753 AGCGAGTGGTTAAGAGAGATTGAGAATGTGGAT-ACGATTAAAGTGTTGAGTGTTGTTGA 1811 ||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||| Sbjct 1776 AGCGAGTGGTTAAGAGAGATTGAGAATGTGGATGA-GATTAAAGTGTTGAGTGCTGTTGA 1834 Query 1812 AGAAATGAGATTAAGATTTCAAGGGTTAGGGTTTAAGCAAGTagaggaagagaaacagag 1871 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1835 AGAAATGAGATTAAGATTTCGAGGGTTAGGGTTTAAGCAAGTAGAGGAAGAGAAACAGAG 1894 Query 1872 gatgagaacagagagattgtctaaggagttagagaagaagaCGAAGGAGTTGGAGGAGAT 1931 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1895 GTTGAGAACAGAGAGATTGTCTAAGGAGTTAGAGAAGAAGACGAAGGAGTTGGAGGAGAT 1954 Query 1932 TCGGGGAACGA-G-A-GGTTCTAGTCCGACGTCGAATATGGT--TGA-ACCGGAGTTGTT 1985 ||||||||| | | |||||| |||||||| |||||||| | || ||| |||||||| Sbjct 1955 CCGGGGAACGGCGCATGGTTCTGGTCCGACGGCGAATATGATGGTGGGACCTGAGTTGTT 2014 Query 1986 GTTTTTGAGAGAGAGTGTGACGCAAGAAACAGAAAAACATGAGAGATTGATAAGAGAGTT 2045 |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| | Sbjct 2015 GTTTTTGAGAGAGAGTGTGACGCAAGAAACAGAAAAGCATGAGAGAATGATAAGAGAGCT 2074 Query 2046 AAACGACGCCGTATCGATGAGTTTGCAAGAGTGTATGGTTCCTGTCTTTGAGGCTTTGGG 2105 |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 2075 AAACGACGCCGTATCGATGAGTATGCAAGAGTGTTTGGTTCCTGTCTTTGAGGCTTTGG- 2133 Query 2106 AG-ATTTTTGTTTTGCTAATTTTAAAGCATATCAGAACATT-GTAATCGTTACCACA 2160 || |||||||||||||||||||||||||||||||||||||| | | ||||| ||||| Sbjct 2134 AGGATTTTTGTTTTGCTAATTTTAAAGCATATCAGAACATTAGCA-TCGTTTCCACA 2189 Score = 726 bits (393), Expect = 0.0 Identities = 459/491 (93%), Gaps = 4/491 (1%) Strand=Plus/Plus Query 1 ATGGGTATCGTTGCTTCCAAGGGAGATAGTAATACTCCATTGTTGAATCTATGTAAGGAG 60 ||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 21 ATGGGAATCGTTGCTTCCAAGGGAGATAGTAACACTCCATTGTTGAATCTGTGTAAGGAG 80 Query 61 AGGAAGGAATTGATCAAAGCAGCTAGAGATGCTCGTTATCACTTAGCGAGATCTCATCTT 120 ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 81 AGGAAAGAATTGATCAGAGCAGCTAGAGATGGTCGTTATCACTTAGCGAGATCTCATCTT 140 Query 121 CTTTACTTTAAATCTCTTTTAGATTTCAGCAAAGCTCTTAAACAGTTTCTTCATAAGGAT 180 |||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||| Sbjct 141 CTTTACTTTAAATCTCTTTTAGATTTTAGCAAAGCTCTTAATCAGTTTGTTCATAAGGAT 200 Query 181 TTGGTTGTGATTCCGTATTCCGATGATGATTCGTCTAGTAGTGATATAATTTGTTCTGGA 240 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 201 TTGGTTGTGATTCCGTATTCGGATGATGATTCGTCTAGTAGTGATATAATTTGTTCTGGA 260 Query 241 TCAGATTCAGACTCGGATACGGATTCTGATTCAGATTCTGATTCTGATTGTATAGTCTGT 300 |||||||||||||||||||||||||||||||| | ||| |||||||||||| |||||||| Sbjct 261 TCAGATTCAGACTCGGATACGGATTCTGATTCGGGTTCAGATTCTGATTGTTTAGTCTGT 320 Query 301 GATCAACCTCAAACAGCTCCGTTGAGCAATAATGACGATCAGAGTCAGCGAAAACCCGTG 360 |||||| |||||||||||||||||||||| ||||| ||||||| || ||||| ||| || Sbjct 321 GATCAATCTCAAACAGCTCCGTTGAGCAACAATGAGGATCAGAATCCTCGAAA-CCC-TG 378 Query 361 -GTT-GGTGATGGAACTTGCGGTGCAAGTAACAATGGTCAAGAGGGTATGGAGAAGTCAA 418 ||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 379 AGTTTGGAGATGGAACTTGCGGTTCAAGTAACAATGGTCAAGAGGGTATGGAGAAGTCAA 438 Query 419 GAGAAGGTTTAGGGTTTGAGGGGACACAGTTCGTTAGTGATCCAAGTGAAGACGAGATGA 478 |||||| ||||||||||||| ||| ||||||||||||||||||||||||||| ||| ||| Sbjct 439 GAGAAGATTTAGGGTTTGAGTGGAAACAGTTCGTTAGTGATCCAAGTGAAGAAGAGGTGA 498 Query 479 AAAGTTCGCAA 489 || |||||||| Sbjct 499 AAGGTTCGCAA 509 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81398853565 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5