BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54480.1
Length=2163
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950090 jgi|Araly1|950090|scaffold_801977.1 2287 0.0
> Ahg950090 jgi|Araly1|950090|scaffold_801977.1
Length=2236
Score = 2287 bits (1238), Expect = 0.0
Identities = 1539/1677 (92%), Gaps = 49/1677 (3%)
Strand=Plus/Plus
Query 498 TGATATACTCGGTTTCTACAAAT-CCGTGTATAACATGCAGCAGTGCGAAATTATCGAA- 555
||||||||||||||| ||| | |||||||||||| ||||||||||||| ||||| ||
Sbjct 548 TGATATACTCGGTTTGTAC-GGTCCCGTGTATAACACGCAGCAGTGCGAATTTATCAAAC 606
Query 556 CTGGATCATAGAGATGATGAGGTTGAGAGTGATGGATTTAGAGAAATTAGGGAGAGAGAA 615
|| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 607 CT-GATCAAAGAGATGATGAGGTTGAGAGTGATGGATTTAGAGAAGTTAGGGAGAGAGAA 665
Query 616 GGGATTCCTGATTTGGAACCTGAAAGTGATTATAATAGTCTGATAAGgaagaataaaaag 675
|||||||||||||||||||||||||||||| |||||||||| | || || |
Sbjct 666 GGGATTCCTGATTTGGAACCTGAAAGTGATCATAATAGTCT--T--------AT-AAGA- 713
Query 676 aagaataaaaagaagaagaagaagaagaatgttagagaaagCTCTTCTGTTGCAAGTGAA 735
||||| |||||||| | | |||||||| | | || ||| ||||||||||||
Sbjct 714 AAGAACCAAAAGAAG-A-CA-AAGAAGAA-G--A-AG-AAG-------GTTGCAAGTGAA 758
Query 736 ATTGATAAGCGAGATGTTGAAGCGAATACTTGTAATGGTCAAGTTGCAGATGAGACTGAT 795
|||||||||| |||||||||||| || ||||||||||| | ||||||||||||||||||
Sbjct 759 ATTGATAAGCAAGATGTTGAAGCAAACACTTGTAATGGAGATGTTGCAGATGAGACTGAT 818
Query 796 AATTCTAATGAAGCTTGTGCGCAAGAGACAG-AAAACACTCCAGAGATTGTTACGGAAGA 854
||||||| || |||||| | || |||||||| |||| ||||||||||||||||| |||||
Sbjct 819 AATTCTAGTGGAGCTTGCGAGCGAGAGACAGCAAAA-ACTCCAGAGATTGTTACTGAAGA 877
Query 855 AGTGACGAGATCAGATGAGGAAGTTGAAGTAGTGGCAAGATCAGATGAGGAAGTTTCTGA 914
|||||| |||||||||||||||||||||| || | |||||||||||||||||||||||||
Sbjct 878 AGTGACAAGATCAGATGAGGAAGTTGAAGAAGAGACAAGATCAGATGAGGAAGTTTCTGA 937
Query 915 TGAAGCGTATGAGTCTTCTTCTTCTTGTTTTTCGGAATCTTCTGGTTCGGGTTTGACGGA 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 938 TGAAGCGTATGAGTCTTCTTCTTCTTGTTTTTCGGAATCTTCTGGTTCGGGTTTGACTGA 997
Query 975 TCTAAGGAAGGTAGTGGAAAGGATCAATAGTATATGCGGGAAAGCTGCGGGTAATAGTGA 1034
||||||||| || || |||||||||| | ||||||||| |||||||| |||| |||||||
Sbjct 998 TCTAAGGAATGTTGTAGAAAGGATCACTCGTATATGCGAGAAAGCTGTGGGTGATAGTGA 1057
Query 1035 AGTCTCTGAGTTGCTTGAAGTAAGCAGAGTTGTTTATCATCAACCTTTAGGATCTCAATT 1094
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1058 AGTCTCTGAGTTGCTTGAAGTAAGCAGAGTTGTTCATCATCAACCTTTAGGATCTCAATT 1117
Query 1095 CAAGGGATTTGCTTCAAGAGTAATTGGTAGTTCCGGGACTACGACTCGTGATTTGGTTTT 1154
|||||||||||||||||| ||| ||||| || |||||| | |||||||||||||| ||||
Sbjct 1118 CAAGGGATTTGCTTCAAGGGTACTTGGTGGTACCGGGAATTCGACTCGTGATTTGATTTT 1177
Query 1155 AAAGCGCCGTTTTCGCTTAGATGATCTCGCTGTTTCACTCTCTATGACATTAGAGAAGCT 1214
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1178 AAAGCGCCGTTTTCGCTTAGATGATGTTGCTGTTTCACTCTCTATGACATTAGAGAAGCT 1237
Query 1215 TTATATGTGGGAAAAGAAGCTTCACGCAGAAGTTACAGCT-GAAGAAAAGCTTAGGGTTG 1273
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1238 TTATATGTGGGAAAAGAAGCTTCACGCAGAAGTTACAG-TAGAAGAAAAGCTTAGGGTTT 1296
Query 1274 CTTATGAAAAAGCGTACAAGATTCTGAACAATCTTGATCAAAACGGAGCAGAATCTAGTG 1333
||||||| |||||||||||||||||||||||||||||||||| |||||||||||| || |
Sbjct 1297 CTTATGATAAAGCGTACAAGATTCTGAACAATCTTGATCAAACCGGAGCAGAATCGAGCG 1356
Query 1334 AGCTTTACGAGGCGGAAACTTTGGTTAAACTCCATTTATCTAAGGTTAATGTTTCGGTTC 1393
|| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 1357 AGATTTACGAGGCGGAAACTGTGGTTAAACTCTATTTATCTAAGATTAATGTTTCGGTTC 1416
Query 1394 GAGCGGTTGAATCGATTTCGATGAGAATTCATAAGATAAGAGACGAAGAGCTTTCGTTTC 1453
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1417 GAGCGGTTGAATCGATTTCCATGAGAATTCATAAGATAAGAGACGAAGAGCTTTCGTTTC 1476
Query 1454 AAGTGATTGAGATCATTAACGGATTCAAAACAATGTGGAGATTCTTGGCGAAATGTCACC 1513
| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1477 AGGTGATTGAGATCATAAACGGATTCAAAAGAATGTGGAGATTCTTGGCGAAATGTCACC 1536
Query 1514 ATAAGCAGTTTCGAGTGATTGCGAGAAGCAAGTCTTGTGTTCACATTGTTGAAAACGGAT 1573
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1537 ATAAGCAGTTTCGAGTGATTGCGAGAAGCAAGTCTTGTGTTCACATTGTTGAAAATGGAT 1596
Query 1574 CGAGCTCCAGGAAAGCCACGCAGCAAGTCGAAAAACAGATTAGAAGATACAGAGAATCTT 1633
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1597 CGAGCTCGAGGAAAGCTACGCAGCAAGTCGAAAAACAGATTAGAAGATACAGAGAATCTT 1656
Query 1634 TGAAAGGTTACATTGATGCACACAGAGGTTTCGTTAAGCTTTTAAACGAATGGCTTAACC 1693
||||||||||||||||| | || ||||||||||||||||| |||||||||||||||| ||
Sbjct 1657 TGAAAGGTTACATTGATTCTCAGAGAGGTTTCGTTAAGCTCTTAAACGAATGGCTTAGCC 1716
Query 1694 GAATCATCATGGAGGACGATGAAACCGAGA-CTGAAGCTCCTGAGATATTTAGGGTTTGC 1752
||| |||||||||||| ||||||||||||| | || ||||||||||||||||||||||||
Sbjct 1717 GAAACATCATGGAGGATGATGAAACCGAGATC-GAGGCTCCTGAGATATTTAGGGTTTGC 1775
Query 1753 AGCGAGTGGTTAAGAGAGATTGAGAATGTGGAT-ACGATTAAAGTGTTGAGTGTTGTTGA 1811
||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||
Sbjct 1776 AGCGAGTGGTTAAGAGAGATTGAGAATGTGGATGA-GATTAAAGTGTTGAGTGCTGTTGA 1834
Query 1812 AGAAATGAGATTAAGATTTCAAGGGTTAGGGTTTAAGCAAGTagaggaagagaaacagag 1871
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1835 AGAAATGAGATTAAGATTTCGAGGGTTAGGGTTTAAGCAAGTAGAGGAAGAGAAACAGAG 1894
Query 1872 gatgagaacagagagattgtctaaggagttagagaagaagaCGAAGGAGTTGGAGGAGAT 1931
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1895 GTTGAGAACAGAGAGATTGTCTAAGGAGTTAGAGAAGAAGACGAAGGAGTTGGAGGAGAT 1954
Query 1932 TCGGGGAACGA-G-A-GGTTCTAGTCCGACGTCGAATATGGT--TGA-ACCGGAGTTGTT 1985
||||||||| | | |||||| |||||||| |||||||| | || ||| ||||||||
Sbjct 1955 CCGGGGAACGGCGCATGGTTCTGGTCCGACGGCGAATATGATGGTGGGACCTGAGTTGTT 2014
Query 1986 GTTTTTGAGAGAGAGTGTGACGCAAGAAACAGAAAAACATGAGAGATTGATAAGAGAGTT 2045
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
Sbjct 2015 GTTTTTGAGAGAGAGTGTGACGCAAGAAACAGAAAAGCATGAGAGAATGATAAGAGAGCT 2074
Query 2046 AAACGACGCCGTATCGATGAGTTTGCAAGAGTGTATGGTTCCTGTCTTTGAGGCTTTGGG 2105
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 2075 AAACGACGCCGTATCGATGAGTATGCAAGAGTGTTTGGTTCCTGTCTTTGAGGCTTTGG- 2133
Query 2106 AG-ATTTTTGTTTTGCTAATTTTAAAGCATATCAGAACATT-GTAATCGTTACCACA 2160
|| |||||||||||||||||||||||||||||||||||||| | | ||||| |||||
Sbjct 2134 AGGATTTTTGTTTTGCTAATTTTAAAGCATATCAGAACATTAGCA-TCGTTTCCACA 2189
Score = 726 bits (393), Expect = 0.0
Identities = 459/491 (93%), Gaps = 4/491 (1%)
Strand=Plus/Plus
Query 1 ATGGGTATCGTTGCTTCCAAGGGAGATAGTAATACTCCATTGTTGAATCTATGTAAGGAG 60
||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 21 ATGGGAATCGTTGCTTCCAAGGGAGATAGTAACACTCCATTGTTGAATCTGTGTAAGGAG 80
Query 61 AGGAAGGAATTGATCAAAGCAGCTAGAGATGCTCGTTATCACTTAGCGAGATCTCATCTT 120
||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 81 AGGAAAGAATTGATCAGAGCAGCTAGAGATGGTCGTTATCACTTAGCGAGATCTCATCTT 140
Query 121 CTTTACTTTAAATCTCTTTTAGATTTCAGCAAAGCTCTTAAACAGTTTCTTCATAAGGAT 180
|||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||
Sbjct 141 CTTTACTTTAAATCTCTTTTAGATTTTAGCAAAGCTCTTAATCAGTTTGTTCATAAGGAT 200
Query 181 TTGGTTGTGATTCCGTATTCCGATGATGATTCGTCTAGTAGTGATATAATTTGTTCTGGA 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 201 TTGGTTGTGATTCCGTATTCGGATGATGATTCGTCTAGTAGTGATATAATTTGTTCTGGA 260
Query 241 TCAGATTCAGACTCGGATACGGATTCTGATTCAGATTCTGATTCTGATTGTATAGTCTGT 300
|||||||||||||||||||||||||||||||| | ||| |||||||||||| ||||||||
Sbjct 261 TCAGATTCAGACTCGGATACGGATTCTGATTCGGGTTCAGATTCTGATTGTTTAGTCTGT 320
Query 301 GATCAACCTCAAACAGCTCCGTTGAGCAATAATGACGATCAGAGTCAGCGAAAACCCGTG 360
|||||| |||||||||||||||||||||| ||||| ||||||| || ||||| ||| ||
Sbjct 321 GATCAATCTCAAACAGCTCCGTTGAGCAACAATGAGGATCAGAATCCTCGAAA-CCC-TG 378
Query 361 -GTT-GGTGATGGAACTTGCGGTGCAAGTAACAATGGTCAAGAGGGTATGGAGAAGTCAA 418
||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 379 AGTTTGGAGATGGAACTTGCGGTTCAAGTAACAATGGTCAAGAGGGTATGGAGAAGTCAA 438
Query 419 GAGAAGGTTTAGGGTTTGAGGGGACACAGTTCGTTAGTGATCCAAGTGAAGACGAGATGA 478
|||||| ||||||||||||| ||| ||||||||||||||||||||||||||| ||| |||
Sbjct 439 GAGAAGATTTAGGGTTTGAGTGGAAACAGTTCGTTAGTGATCCAAGTGAAGAAGAGGTGA 498
Query 479 AAAGTTCGCAA 489
|| ||||||||
Sbjct 499 AAGGTTCGCAA 509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81398853565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5