BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G54490.1

Length=528
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg495530 jgi|Araly1|495530|fgenesh2_kg.8__1346__AT5G54490.1         584    2e-166


> Ahg495530 jgi|Araly1|495530|fgenesh2_kg.8__1346__AT5G54490.1
Length=451

 Score =  584 bits (316),  Expect = 2e-166
 Identities = 368/392 (94%), Gaps = 8/392 (2%)
 Strand=Plus/Plus

Query  53   TAATGGCATCTCCTAAATCCTCAACAAGACCAAACCAAGAAAACCAAGAACCTC-AGTTC  111
            ||||||| || ||||||||| |||||||||||||||||||||| |||||||| | |||||
Sbjct  36   TAATGGCGTCGCCTAAATCCCCAACAAGACCAAACCAAGAAAATCAAGAACC-CAAGTTC  94

Query  112  CAAGATTTCTTCCCAACAATGGCAGGAAAACTCGGTGGAGAAGGTCTGATCGAAGAGATT  171
            ||||||||||||||||||||||| || |||||||||||||||||||| ||||||||| ||
Sbjct  95   CAAGATTTCTTCCCAACAATGGCCGGTAAACTCGGTGGAGAAGGTCTAATCGAAGAGCTT  154

Query  172  TGCAAAGGGTTCGAGCTTCTTATGGACAAAGACAAAGGAGTCATCACATTCGAGAGCTTA  231
            || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  155  TGTAAAGGGTTCGAGCTTCTTATGGATAAAGACAAAGGAGTCATCACATTCGAGAGCTTA  214

Query  232  CGAAGAAACGCATCGACGGTTCTTGGACTCGGAGATCTAACGGACGACGATGTTCGATAT  291
            ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||  
Sbjct  215  CGAAGAAACGCATCGACGGTTCTTGGACTTGGAGATCTAACGGATGACGATGTTCGATGC  274

Query  292  ATGATCAACGAAGGAGATTTTGATCGAGACGGTGCGTTGAATCAGATGGAGTTTTGTGTG  351
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  275  ATGATCAACGAAGGAGATTGTGATCGAGACGGTGCGTTGAATCAGATGGAGTTTTGTGTG  334

Query  352  CTCATGTTTAGACTTAGTCCTGAA-TTGATGGAAGCGTCACGGTGTGTTGTGACGGAGGT  410
            |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct  335  CTCATGTTTAGACTTAGTCCTGAACTT-ATGGAAGCGTCACGGTGTGTTGTGACGGAGGT  393

Query  411  GATCGAGGAAGAGTTTTACCGGCATTGATAGA  442
            |||| |||||||||||| |||  ||| |||||
Sbjct  394  GATCAAGGAAGAGTTTT-CCG--ATT-ATAGA  421



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19230416856


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5