BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54500.2
Length=967
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495531 jgi|Araly1|495531|fgenesh2_kg.8__1347__AT5G54500.1 952 0.0
> Ahg495531 jgi|Araly1|495531|fgenesh2_kg.8__1347__AT5G54500.1
Length=1009
Score = 952 bits (515), Expect = 0.0
Identities = 613/656 (93%), Gaps = 24/656 (4%)
Strand=Plus/Plus
Query 3 AATGGAAAAAGGATAAAGAGCACAGATCATCTTCT--AC-A-T---CTCTATAAATACGC 55
||||||||||||||||||| ||||||||||||||| || | | ||||||||||||||
Sbjct 1 AATGGAAAAAGGATAAAGAACACAGATCATCTTCTCCACGACTCCACTCTATAAATACGC 60
Query 56 TTTCTACATTTTCGGATCGTTGAACA----AC-Atctctctctctctctctctctctctc 110
||||| |||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 61 TTTCTGCATTTTCGGATCGTTGAACATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 120
Query 111 tAAACCCATTAAAGTAATTTAGCTCCTCATAGATTCTCGAGAAGAACACTTCCATGGCGA 170
||||||||||||||| |||||||| || | | ||||||||||||| |||||||
Sbjct 121 TAAACCCATTAAAGT-ATTTAGCT--TC----A---T--AGAAGAACACTTCGATGGCGA 168
Query 171 CTAAAGTATATATCGTGTACTACTCTATGTATGGTCATGTTGAGAAATTGGCTGAAGAAA 230
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 CTAAAGTGTATATCGTGTACTACTCTATGTATGGTCATGTTGAGAAATTGGCTGAAGAAA 228
Query 231 TAAGGAAAGGAGCTGCTTCTGTTGAAGGTGTTGAAGCTAAACTATGGCAGGTACCAGAGA 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 TAAGGAAAGGAGCTGCTTCTGTTGAAGGTGTTGAAGCTAAACTATGGCAGGTACCAGAGA 288
Query 291 CGCTTCACGAAGAGGCACTCTCTAAGATGAGCGCACCACCAAAGAGTGAATCCCCAATCA 350
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 CGCTTCACGAAGAAGCACTCTCTAAGATGAGCGCACCACCAAAGAGTGAATCCCCAATCA 348
Query 351 TAACCCCGAATGAGCTAGCTGAAGCTGATGGGTTTGTCTTTGGTTTCCCAACAAGATTTG 410
| ||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 TTACCCCCAACGAGCTAACTGAAGCTGATGGGTTTGTCTTTGGTTTCCCAACAAGATTTG 408
Query 411 GTATGATGGCTGCTCAGTTCAAAGCCTTTTTGGATGCAACCGGTGGACTCTGGAGGGCTC 470
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 409 GTATGATGGCTGCTCAGTTCAAAGCCTTTTTGGATGCAACCGGTGGACTCTGGAGGACTC 468
Query 471 AGGCACTCGCCGGTAAACCAGCTGGTATCTTCTACAGCACTGGCTCTCAAGGTGGTGGCC 530
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 AGTCACTCGCCGGTAAACCAGCTGGTATCTTCTACAGCACTGGCTCTCAAGGTGGTGGCC 528
Query 531 AAGAAACCACAGCATTGACGGCAATAACTCAGCTGGTTCACCACGGGATGTTATTTGTCC 590
|||||||||| ||||||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 529 AAGAAACCACCGCATTGACGGCGATAACTCAGCTGGTTCACCATGGGATGTTGTTTGTCC 588
Query 591 CAATCGGTTACACATTTGGCGCGGGAATGTTCGAAATGGAGAATGTGAAAGCTGGA 646
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 589 CAATCGGTTACACATTTGGTGCGGGAATGTTCGAAATGGAGAATGTGAAAGGTGGA 644
Score = 488 bits (264), Expect = 3e-137
Identities = 301/317 (95%), Gaps = 9/317 (3%)
Strand=Plus/Plus
Query 640 AGCTGGAGCTACAGCAAGCATTTCACCAAGGCCAGTACATTGCCAGCATCACCAAGAAGC 699
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 697 AGCTGGAGCTACAGCAAGCATTTCACCAAGGCAAGTACATTGCCACCATCACCAAGAAGC 756
Query 700 TCAAGGGATCTACTGCTTAGAGCTTAAAAAGATTATGGTATCAATAAGaaaaaaagaaaa 759
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 757 TCAAGGGATCTACTGCTTAGAGCTTGAAAAGATTATGGTATCAATAAGATAAAAAGAAAA 816
Query 760 aaaCAGTTTGGTTCTGC--ttt-t-t-tttatattctttctctttgaatttgggggcttt 814
||||||||||||||||| ||| | | |||||||||||||||||||||||||||||||||
Sbjct 817 AAACAGTTTGGTTCTGCTTTTTATATCTTTATATTCTTTCTCTTTGAATTTGGGGGCTTT 876
Query 815 tgtgatttttcgggtttAATTATCTTAAAATACATGATATTATTTCACAGCAATAATTCT 874
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 877 TGTGATTTTTCGGGTTTAATTATCTTAAAATACTTGATATTATTTCACAGCAATAATTCT 936
Query 875 TATCTTGGTTTTACGTATAGATGATAATGTATGATTTGTACTTGTGTTACACTCCAAACA 934
| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 937 TGTCTTGGTTTTACGTATAGAT-AT---GTATGATTTGTACTTGTGTTACACTCCAAACA 992
Query 935 AAAGATGCGTCGTCATT 951
|||||| ||||||||||
Sbjct 993 AAAGATTCGTCGTCATT 1009
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35911787814
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5