BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54510.1
Length=2181
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950094 jgi|Araly1|950094|scaffold_801981.1 3291 0.0
Ahg492072 jgi|Araly1|492072|fgenesh2_kg.7__1505__AT4G27260.1 1764 0.0
> Ahg950094 jgi|Araly1|950094|scaffold_801981.1
Length=1967
Score = 3291 bits (1782), Expect = 0.0
Identities = 1905/1965 (97%), Gaps = 6/1965 (0%)
Strand=Plus/Plus
Query 95 ttAAACACAAAACCTAAACGATGCCTGAGGCACCAAAGATCGCAGCTTTGGAGGTTTCTG 154
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 6 TTAAACAC-AAACCTAAACGATGCCTGAGGCACCAAAGATCGTAGCTTTGGAGGTTTCTG 64
Query 155 ATGAGAGCCTCGCTGAGAAGAACAAGAACAAACTCCAATTCATCGAAGACGTGACCACGA 214
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 ATGAGAGCCTCGCGGAGAAGAACAAGAACAAACTCCAATTCATCGAAGACGTGACCACGA 124
Query 215 ACGCAGATGATGTTCAGAGACGAGTTCTTGAAGAGATCCTTTCACGTAATGCTGATGTGG 274
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 125 ACGCAGATGATGTTCAGAGACGAGTTCTTGAGGAGATCCTTTCACGTAATGCTGACGTGG 184
Query 275 AGTATCTTAAACGACACGGGCTCGAAGGACGAACCGATCGTGAGACTTTCAAACATATCA 334
||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| |||
Sbjct 185 AGTATCTCAAACGACACGGGCTCGATGGACGAACCGACCGTGAGACTTTCAAACATGTCA 244
Query 335 TGCCTGTCGTAACTTACGAAGATATTCAACCTGAGATCAACAGAATCGCCAATGGTGATA 394
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 245 TGCCTGTCGTAACTTACGAAGATATTCAACCTGAGATCAACAGAATCGCTAATGGTGATA 304
Query 395 AGTCTCAAGTCCTCTGTTCTAACCCCATCTCTGAGTTCCTCACAAGTTCTGGGACTTCTG 454
| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 AATCCCAAATCCTCTGTTCTAACCCCATCTCTGAGTTCCTCACAAGTTCTGGGACTTCTG 364
Query 455 GTGGAGAGAGGAAACTGATGCCAACAATCGAAGAGGAACTAGACAGAAGATCACTTCTCT 514
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 365 GTGGAGAGAGGAAACTGATGCCAACAATAGAAGAGGAACTAGACAGAAGATCACTTCTCT 424
Query 515 ACAGTCTCTTGATGCCTGTGATGGACCAGTTTGTTCCTGGTCTTGACAAAGGCAAAGGGA 574
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 425 ACAGTCTCTTGATGCCTGTGATGAACCAGTTTGTTCCTGGTCTTGACAAAGGCAAAGGAA 484
Query 575 TGTATTTTCTGTTTATCAAATCAGAATCCAAGACACCAGGTGGTCTCCCTGCTCGTCCTG 634
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 485 TGTATTTTCTGTTTATCAAATCCGAATCCAAGACACCAGGTGGTCTCCCTGCTCGTCCTG 544
Query 635 TTTTAACCAGTTACTACAAATCCTCTCACTTCAAAAACAGACCTTATGATCCTTACACCA 694
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 545 TTTTAACCAGTTACTACAAATCCTCTCACTTCAAAAACAGACCTTTTGATCCTTACAATA 604
Query 695 ACTACACAAGTCCCAACCAAACCATCCTTTGTTCTGACTCTTACCAGAGCATGTACTCTC 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 ACTACACAAGTCCCAACCAAACCATCCTTTGTTCTGACTCTTACCAGAGCATGTACTCTC 664
Query 755 AAATGCTTTGTGGTTTATGCCAACACAAAGAGGTTCTTCGTGTTGGTGCTGTTTTTGCCT 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 AAATGCTTTGTGGTTTATGCCAACACAAAGAGGTTCTTCGTGTTGGTGCTGTTTTTGCCT 724
Query 815 CTGGTTTCATTAGAGCCATCAAGTTTCTTGAGAAACATTGGCCTGAGCTAGCTCGTGACA 874
|||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||
Sbjct 725 CTGGTTTCATTAGAGCCATCAAATTTCTTGAGAAACATTGGTCTGAGCTAGCCCGTGACA 784
Query 875 TTAGAACCGGTACTCTCAGTTCCGAGATAACCGATTCTT-CGGTTCGTGAGGCGGTCGGG 933
||||||||||||| ||||||||||||||||||||| ||| | ||||||||||| ||||||
Sbjct 785 TTAGAACCGGTACCCTCAGTTCCGAGATAACCGAT-CTTTCAGTTCGTGAGGCAGTCGGG 843
Query 934 GAGATTCTTAAACCGGATCCTAAGCTTGCTGATTTCGTCGAATCTGAATGCAGGAAGACT 993
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 844 GAGATTCTTAAACCGGATCCTAAGCTTGCTGATTTCGTCGAATCGGAATGCAGGAAGACC 903
Query 994 TCTTGGCAAGGGATCATCACTAGGCTTTGGCCAAACACTAAGTATGTGGATGTGATTGTG 1053
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 904 TCTTGGCAAGGGATCATCACTAGGCTTTGGCCAAACACCAAGTATGTGGATGTGATTGTG 963
Query 1054 ACTGGAACAATGTCACAGTATATTCCAACTCTGGATTATTACAGCAATGGTTTGCCTCTT 1113
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 964 ACCGGAACAATGTCACAGTATATTCCAACTCTGGATTATTATAGCAATGGTTTGCCTCTT 1023
Query 1114 GTCTGCACAATGTATGCTTCTTCGGAGTGTTACTTCGGTGTGAATCTCAGGCCACTCTGC 1173
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1024 GTCTGCACAATGTATGCTTCTTCGGAGTGTTACTTTGGTGTGAATCTCAGGCCTCTCTGC 1083
Query 1174 AAACCAAGTGAAGTCTCTTACACTCTCATACCGAACATGGCGTATTTCGAGTTCTTGCCT 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 AAACCAAGTGAAGTCTCTTACACTCTCATACCGAACATGGCGTATTTCGAGTTCTTGCCT 1143
Query 1234 GTTCATAGGAACAGTGGAGTTACTAGCTCTATCAGTCTTCCAAAAGCACTCACTGAGAAA 1293
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct 1144 GTTCATAGGAACAGTGGAGTCACTAGCTCAATCAGTCTTCCGAAAGCACTCACTGAGAAA 1203
Query 1294 GAACAACAAGAGCTTGTTGATCTCGTCGATGTCAAGCTTGGTCAGGAGTACGAGCTTGTT 1353
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1204 GAACAACAAGAGCTTGTTGATCTCGTTGATGTCAAGCTTGGTCAGGAGTACGAGCTTGTT 1263
Query 1354 GTCACCACCTATGCTGGGCTTTACAGGTACAGAGTGGGTGATGTCCTAAGCGTGGCTGGT 1413
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 GTCACCACCTATGCTGGACTTTACAGGTACAGAGTGGGTGATGTCCTAAGCGTGGCTGGT 1323
Query 1414 TTCAAGAACAATGCGCCTCAGTTCAGCTTCATATGCCGCAAGAACGTGG-TCTTAAGCAT 1472
||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||
Sbjct 1324 TTCAAGAACAATGCGCCTCAGTTCAGCTTCATATGCCGCAAGAACGTTGCTCT-AAGCAT 1382
Query 1473 TGACTCGGACAAAACCGATGAGGTTGAGCTTCAAAACGCAGTTAAAAACGCGGTAACACA 1532
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 TGACTCAGACAAAACCGATGAGGTTGAGCTTCAAAACGCAGTTAAAAACGCGGTAACACA 1442
Query 1533 CCTTGTTCCGTTTGATGCTTCACTCTCCGAGTACACTAGCTATGCGGACACATCATCTAT 1592
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 CCTTGTTCCGTTCGATGCCTCACTCTCCGAGTACACTAGCTATGCGGACACATCATCTAT 1502
Query 1593 CCCGGGCCACTATGTCTTATTCTGGGAGCTCTGCTTGAACGGTAACACGCCAATTCCTCC 1652
||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1503 CCCAGGCCACTATGTCTTGTTCTGGGAGCTCTGCTTGAATGGTAACACGCCAATTCCTCC 1562
Query 1653 CTCGGTCTTCGAGGATTGCTGTTTAACCATAGAGGAATCACTTAACAGTGTGTATAGACA 1712
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1563 CTCGGTCTTCGAGGATTGCTGTTTAACCATAGAAGAATCACTTAACAGTGTGTATAGACA 1622
Query 1713 AGGAAGGGTCAGTGATAAGTCCATTGGACCATTGGAGATCAAGATGGTCGAGTCAGGGAC 1772
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1623 AGGAAGGGTCAGTGACAAGTCCATTGGACCATTGGAGATCAAGATGGTCGAGTCAGGGAC 1682
Query 1773 TTTCGATAAGCTCATGGATTATGCGATAAGCTTGGGTGCATCGATCAATCAGTACAAGAC 1832
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1683 TTTCGATAAGCTCATGGATTATGCGATAAGCTTGGGGGCATCGATCAATCAGTACAAGAC 1742
Query 1833 ACCAAGGTGTGTGAAGTTTGCTCCGATCATTGAGCTTTTAAACTCTAGGGTTGTTGATAG 1892
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1743 ACCAAGGTGTGTGAAGTTTGCTCCGATCATTGAGCTTTTGAACTCTAGGGTTGTTGATAG 1802
Query 1893 TTACTTCAGCCCCAAGTGTCCTAAATGGTCCCCTGGTCACAAGCAATGGGGGAGTAACTA 1952
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1803 TTACTTCAGCCCCAAGTGTCCTAAATGGGCCCCTGGTCACAAGCAATGGGGGAGTAACTA 1862
Query 1953 AAGAGGAAACTTTGGGGAAGAAGAAAGACTCTCTATGAAGTAGAAGGTTCTGTTTT-GTA 2011
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1863 AAGAGGAAACTTTGAGGAAGAAGAGAGACTCTCTATGAAGTAGAAGGTTCTGTTTTTGTA 1922
Query 2012 ATCAAATGAATATCGAGAAAAGTGATAAATTATTATGTCtgtttg 2056
||||||||||||||| |||||||||| ||| ||||||||||||||
Sbjct 1923 ATCAAATGAATATCGGGAAAAGTGATTAATCATTATGTCTGTTTG 1967
> Ahg492072 jgi|Araly1|492072|fgenesh2_kg.7__1505__AT4G27260.1
Length=2227
Score = 1764 bits (955), Expect = 0.0
Identities = 1606/1918 (84%), Gaps = 53/1918 (3%)
Strand=Plus/Plus
Query 109 TAAACGATGCCTGAGGCACCAAAGATCGCAGCTTTGGAGGTTTCTGATGAGAGC-CTCG- 166
||||| ||||||||||||||||||| | | |||| ||||||| |||| || | || |
Sbjct 77 TAAACCATGCCTGAGGCACCAAAGAAGGTATCTTTAGAGGTTTTTGATCTGA-CGCTTGA 135
Query 167 CTGAGAAGAACAAG-AACAAACTCCAATTCATCGAAG-ACGTGACCACGAACGCAGA-TG 223
| | || |||||| || || || || || ||||||| || | ||| | ||||| ||
Sbjct 136 C-CAAAAAAACAAGCAA-AAGCTTCAGTTGATCGAAGAAC-TTACCTCTAACGCCGACCA 192
Query 224 ATGTTCAGAGACGAGTTCTT-GAAGAGATCCTT-TCACGTAATGCTGATGTGGAGTATCT 281
|| | |||||||| | |||| || ||||| ||| || || |||||||| |||||||||||
Sbjct 193 AT-TCCAGAGACGTG-TCTTGGAGGAGAT-CTTGTCCCGCAATGCTGACGTGGAGTATCT 249
Query 282 TAAACGACACGGGCTCGAA-GGACGAACCGATCGTGAGACTTTCAAACATATCATGCCTG 340
||||||| ||| || || || || || || ||||| |||||| | ||||||| |
Sbjct 250 CCGGCGACACGACCTC-AACGGTCGCACTGACCGAGAGACCTTCAAAAACGTCATGCCGG 308
Query 341 TCGTAACTTACGAAGATATTCAACCTGAGATCAACAGAATCGCCAATGGTGATAAGTC-T 399
| | || |||||||||||||| |||||||||||||| ||||| ||||||||||| ||
Sbjct 309 TTATCACCTACGAAGATATTCAGCCTGAGATCAACAGGATCGCTAATGGTGATAAATCAC 368
Query 400 CAAGTCCTCTGTTCTAACCCCATCTCTGAGTTCCTCACAAGTTCTGGGACTTCTGGTGGA 459
| | |||||| ||| || |||||||||||||| |||||||| |||||||| ||||||||
Sbjct 369 CTA-TCCTCTCTTCAAAACCCATCTCTGAGTTTCTCACAAGCTCTGGGACATCTGGTGGG 427
Query 460 GAGAGGAAACTGATGCCAACAATCGAAGAGGAACTAGACAGAAGATCACTTCTCTACAGT 519
|||||||| || ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 428 GAGAGGAAGCTAATGCCAACAATCGAAGAGGAACTAGACAGAAGATCTCTCCTCTACAGT 487
Query 520 CTCTTGATGCCTGTGATG-GACCAGTTTGTTCCTGGTCTTGACAAA-GGCAAAGGGATGT 577
|||||||||||||||||| | |||||||||||||||||| || ||| |||||||| ||||
Sbjct 488 CTCTTGATGCCTGTGATGAG-CCAGTTTGTTCCTGGTCTCGA-AAATGGCAAAGGAATGT 545
Query 578 ATTTTCT-GTTTATCAAATCAGAATCCAAGACACCAGGTGGTCTCCCTGCTCGTCCTGTT 636
|||| || ||| ||||| || ||||||||||||||||| || |||||||||||||| ||
Sbjct 546 ATTT-CTTGTTCATCAAGTCCGAATCCAAGACACCAGGAGGCCTCCCTGCTCGTCCCGTC 604
Query 637 TTAACCAGTTACTACAAATCCTCTCACTTCAAA-AACAGACCTTATGATCCTTACACCAA 695
|||||||| |||||||| || || || |||||| || ||||| |||||||||||||||||
Sbjct 605 TTAACCAGCTACTACAAGTCTTCCCATTTCAAAGAA-AGACCCTATGATCCTTACACCAA 663
Query 696 CTACACAAGTCCC-AACCAAACCATCCTTTGTTCTGACTCTTACCAGAGCATGTACTCTC 754
||||||||| ||| ||| | ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 664 CTACACAAG-CCCTAACGAGACCATCCTTTGCTCTGACTCTTACCAGAGCATGTATTCTC 722
Query 755 AAATGCTTTGTGGTTTATGCCAACACAAAGAGGTTCTTCGTGTTGGTGCTGTTTTTGCCT 814
| ||||| ||||| ||||| |||||| | ||||||||||| || || ||||| || ||||
Sbjct 723 AGATGCTCTGTGGCTTATGTCAACACCAGGAGGTTCTTCGAGTCGGCGCTGTCTTCGCCT 782
Query 815 CTGGTTTCATTAGAGCCATCAAGTTTCTTGAGAAACATTGGCCTGAGCTAGCTC-GTGAC 873
|||| ||||| ||||||||||||||||| |||||||| ||| | ||| | | || |||||
Sbjct 783 CTGGATTCATCAGAGCCATCAAGTTTCTAGAGAAACACTGGACAGAGTTGG-TCCGTGAC 841
Query 874 ATTAGAACCGGTACTCTCAGTTCCGAGATAACCGATTCTTCGGTTCGTGAGGCGGTCGGG 933
|| |||||||||||||| |||||| ||||| ||| |||| ||||| |||||||||
Sbjct 842 ATCAGAACCGGTACTCTGAGTTCCCTCATAACTGATCCTTCCGTTCGCGAGGCGGTCTCC 901
Query 934 GAGATTCTTAAACCGGATCCTAAGCTTGCTGA-TTTCGTCGAATCTGAATGCAGGAAGAC 992
|||| ||||||||| || | ||||| ||||| ||| || |||| ||| |||| |||| |
Sbjct 902 AAGATCCTTAAACCGAATTCAAAGCTCGCTGAGTTT-GTGGAATTTGAGTGCAAGAAGTC 960
Query 993 TTCTTGGCAAGGGATCATCACTAGGCTTTGGCCAAACACTAAGTATGTGGATGTGATTGT 1052
|| ||||||||||| || |||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 961 GTCCTGGCAAGGGATTATTACTAGGCTGTGGCCTAACACAAAGTATGTGGATGTGATTGT 1020
Query 1053 GACTGGAACAATGTCACAGTATATTCCAACTCTGGATTATTACAGCAATGGTTTGCCTCT 1112
||| || |||||||| || || ||||||||| |||| || ||||| ||||| ||||||||
Sbjct 1021 GACCGGGACAATGTCTCAATACATTCCAACTTTGGACTACTACAGTAATGGCTTGCCTCT 1080
Query 1113 TGTCTGCACAATGTATGCTTCTTCGGAGTGTTACTTCGGTGTGAATCTCAGGCCACTCTG 1172
|||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 1081 TGTCTGCACAATGTATGCTTCTTCCGAGTGTTACTTTGGTGTGAATCTAAGGCCACTCTG 1140
Query 1173 CAAACCAAGTGAAGTCTCTTACACTCTCATACCGAAC-ATGGCGTATTTCGAGTTCTTGC 1231
||||||| | || ||||| ||||| |||||||| | | ||||| ||||||||||||||||
Sbjct 1141 CAAACCATGCGAGGTCTCATACACGCTCATACC-ATCCATGGCTTATTTCGAGTTCTTGC 1199
Query 1232 CTGTTCATAGGAACAGTGGAGTTACTAGCTCTATCAGTCTTCCAAAAGCACTCACTGAGA 1291
||||||| || |||| || ||||||| ||| |||| ||||| ||||||||||||||||
Sbjct 1200 CTGTTCACAGAAACAACGGTGTTACTAACTCCATCAACCTTCCTAAAGCACTCACTGAGA 1259
Query 1292 AAGAACAACAAGAGCTTGTTGATCTCGTCGATGTCAAGCTTGGTCAGGAGTACGAGCTTG 1351
|||| |||||||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct 1260 AAGAGCAACAAGAGCTTGTTGATCTAGTTGATGTCAAGCTTGGTCAGGAATACGAGCTTG 1319
Query 1352 TTGTCACCACCTATGCTGGGCTTTACAGGTACAGAGTGGGTGATGTCCTAAGCGTGGCTG 1411
|||||||||| || |||||||||| ||| ||| |||| |||||| | | || ||| |||
Sbjct 1320 TTGTCACCACTTACGCTGGGCTTTGCAGATACCGAGTTGGTGATTTATTGAGAGTGACTG 1379
Query 1412 GTTTCAAGAACAATGCGCCTCAGTTCAGCTTCATATGCCGCAAGAACGTGGTCTTAAGCA 1471
| ||||||||||| |||||||| ||||| |||||||| |||||||| |||||||| ||||
Sbjct 1380 GATTCAAGAACAAAGCGCCTCAATTCAGTTTCATATGTCGCAAGAATGTGGTCTTGAGCA 1439
Query 1472 TTGACT-CGGACAAAACCGATGAGGTTGAGCTTCAAAACGCAGTTAAAAACGCGGTAACA 1530
| || | | ||||| |||||||||||||| ||||| ||||| || || ||||| || |||
Sbjct 1440 TAGA-TGCCGACAAGACCGATGAGGTTGAACTTCAGAACGCGGTGAAGAACGCAGTGACA 1498
Query 1531 CACCTTGTTCCGTTTGATGCTTCACTCTCCGAGTACACTAGCTATGCGGACACATCATCT 1590
||||| || || ||| |||| |||||||| |||||||| |||||||| |||||| |||
Sbjct 1499 CACCTCGTCCCATTTCATGCCTCACTCTCTGAGTACACGAGCTATGCAGACACAAGTTCT 1558
Query 1591 ATCCCGGGCCACTATGTCTTATTCTGGGAGCTCTGCTTGAACGGTAACACGCCAATTCCT 1650
||||||||||| |||||| | ||||||||||| || ||| | || ||||| || || |||
Sbjct 1559 ATCCCGGGCCATTATGTCCTGTTCTGGGAGCTATGTTTGGATGGAAACACACCGATCCCT 1618
Query 1651 CCCTCGGTCTTCGAGGATTGCTGTTTAACCATAGAGGAATCACTT-AACAGTGTGTATAG 1709
|| |||||||| ||||||||||| ||||| |||| || || || |||| ||| |||||
Sbjct 1619 CCATCGGTCTTTGAGGATTGCTGCTTAACTGTAGAAGAGTCG-TTCAACACTGTTTATAG 1677
Query 1710 ACAAGGAAGGGTCAGTGATAAGTCCATTGGACCA-TTGGAGATCAAGATGGTCGAGTCAG 1768
|||||||||||| ||||| |||||||| || || ||| |||||||||| || ||| |||
Sbjct 1678 ACAAGGAAGGGTTAGTGACAAGTCCATAGGCCCGCTTG-AGATCAAGATTGTTGAGCCAG 1736
Query 1769 GGACTTTCGATAAGCTCATGGATTATGCGATAAGCTTGGGTGCATCGATCAATCAGTACA 1828
|||| |||||||||||||||||||| ||||| |||||||| |||||||| |||||||| |
Sbjct 1737 GGACATTCGATAAGCTCATGGATTACGCGATCAGCTTGGGAGCATCGATTAATCAGTATA 1796
Query 1829 AGACACCAAGGTGTGTGAAGTTTGCTCCGATCATTGAGCTTTTAAACTCTAGGGTTGTTG 1888
|||| || || ||||||||||||||||| ||||| ||||| || ||||| |||||||||
Sbjct 1797 AGACGCCGAGATGTGTGAAGTTTGCTCCAATCATCGAGCTATTGAACTCGAGGGTTGTTA 1856
Query 1889 ATAGTTACTTCAGCCCCAAGTGTCCTAAATGG-TCCCCTGGTCACAAGCAATGGGGGAGT 1947
|||||||||| ||||||||||||||||||||| |||| ||||||||| || ||||| |||
Sbjct 1857 ATAGTTACTTAAGCCCCAAGTGTCCTAAATGGGTCCC-TGGTCACAAACAGTGGGGAAGT 1915
Query 1948 AACTAAAGA-GGAAACTTTGGGGAA-GAAGAA-AGACTCTCTATGAAG-TAGAAGGTT 2001
|||||| || |||| | ||| || | ||| ||||||||| ||| | |||||||||
Sbjct 1916 AACTAA-GATGGAA--TGTGG--AACGT-GAAGAGACTCTCTTTGA-GCTAGAAGGTT 1966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82084477975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5