BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G54520.1 Length=1672 Score E Sequences producing significant alignments: (Bits) Value Ahg950095 jgi|Araly1|950095|scaffold_801982.1 2069 0.0 > Ahg950095 jgi|Araly1|950095|scaffold_801982.1 Length=1411 Score = 2069 bits (1120), Expect = 0.0 Identities = 1320/1416 (93%), Gaps = 16/1416 (1%) Strand=Plus/Plus Query 15 TCGACTTCAACTTTCCGATGGATCTCATCTGCAATTCGTATGCCAATGACTCCGACGACG 74 |||| ||||| |||||||||||||| || ||||||||||||| ||||||||||||||||| Sbjct 7 TCGATTTCAAGTTTCCGATGGATCTTATTTGCAATTCGTATGGCAATGACTCCGACGACG 66 Query 75 AACCTGAGCCAGTGACCAATGAGCGATTAACATCTAAAATCGCCGCAGCACCGTCAATTC 134 ||||||| |||||| |||||||||| ||||||||| ||||||| | |||||||| |||| Sbjct 67 AACCTGAACCAGTGTCCAATGAGCGTTTAACATCTGGAATCGCCACCGCACCGTCTATTC 126 Query 135 CTTCTAAGCGTCCATATCCAGTCCCGGAGGAGCGACAATACAAACCACCGCGTAGACCGT 194 |||| |||||||||||||||||||||||||||||||| | ||||||| |||||||||||| Sbjct 127 CTTCGAAGCGTCCATATCCAGTCCCGGAGGAGCGACATTCCAAACCATCGCGTAGACCGT 186 Query 195 ATCCTCCACACGGTTCCTATTCGGAAT-CTCAAACC-AGCTCGTCGTTTTCAATACCGGT 252 ||||||| || ||||||||||| | || ||| ||| ||||| ||| |||| | || Sbjct 187 ATCCTCCTCAAGGTTCCTATTCTG-ATCCTC-CACCGAGCTCTTCGGTTTC---A---GT 238 Query 253 TCCGGTTCCGGTTCCGGTTCCAGGCCGGTACGTATCCAAGAGAGAGAGATCACTTCTAGC 312 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 239 GCCGGTTCCGGTTCCGGTTCCAGGCCGGTACGTATCTAAGAGAGAGAGATCACTTCTAGC 298 Query 313 CTCCCTTTCAACGATTCCGACTCCAGATCAAAGTTCCGATTTGAGTCAGAAACCTTATAG 372 |||| |||||||||||||||||| |||||||||||||||||||| ||||||||| | ||| Sbjct 299 CTCCGTTTCAACGATTCCGACTCAAGATCAAAGTTCCGATTTGAATCAGAAACCCTCTAG 358 Query 373 CTCTCCTACTGTTCTTGGGAGCATCTCAGATTCTGATGTACCTCGCCATGTTCTATCTTC 432 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 359 CTCTCCTACTGTTCTTGGGAGCATCTCAGATTCTGATGTGCCTCGCCATGTTCTATCTTC 418 Query 433 GGTTAGACATAGACCAAAAGGATCCTCGTTGCAAACCGAAATGCCTAGTAGAATGTCGAT 492 ||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 419 GGTTACACATCGACCAAAAGGATCCTCGTTGCGAACCGAAATGCCTAGTAGAATGTCGAT 478 Query 493 TTCGTTAACCGGCCATACAAAGGCTGTTACTGCTATTGATTGGTCTACAAGTCATGTTCA 552 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 TTCGTTGACCGGCCATACAAAGGCTGTTACTGCTATTGATTGGTCTACAAGTCATGTTCA 538 Query 553 TCTTCTTGCTTCTGCGGGGCTTGATGGTGCT-GTTTACGTGTGGAATGTGTGGAGTAATG 611 ||||||||||||||||||||||||| ||| | | ||||||||||||||| ||||| |||| Sbjct 539 TCTTCTTGCTTCTGCGGGGCTTGATAGTG-TCGCTTACGTGTGGAATGTTTGGAGCAATG 597 Query 612 ATAAGAAGAAAGTACGGGCTTTTCTCCATCATAATGCACCGGTTAAAGATGTGAAGTGGT 671 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 ATAAGAAGAAAGTACGGGCTTTTCTCCATCATAATGCACCGGTTAAAGATGTGAAGTGGT 657 Query 672 CAAAGCAAGGGTTATCGTTGCTTTCTTGTGGATATGACTGCACGTCGAGACTGTTTGATG 731 |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| Sbjct 658 CAAAGCAAGGGTTATCGTTGCTTTCTTGTGGATATGACTGCATGTCGAGACTATTTGATG 717 Query 732 TTGAAAGAGGGGTAGAGACACAATCTTTCAAGGAGGATGAAGTTGTTGGAGTTGTTAAGT 791 |||||||||||||||||| ||| ||||||||||||||| | ||| ||||||||||||||| Sbjct 718 TTGAAAGAGGGGTAGAGATACAGTCTTTCAAGGAGGATCAGGTTATTGGAGTTGTTAAGT 777 Query 792 TTCA-TCCAGATAATTGTAACGTGTTTCTTTCTGGTGGATCAAAGGGAAGTCTTAGATTA 850 | || ||||||| |||||| ||||||||||||||| |||||||||||||||||||||||| Sbjct 778 T-CAATCCAGATCATTGTAGCGTGTTTCTTTCTGGAGGATCAAAGGGAAGTCTTAGATTA 836 Query 851 TGGGACATTAGAGCCAATAAATTCGTGCATGAATATGTTAGAGATCTTGGGCCAATTCTT 910 ||||||||||| ||||| ||| ||||||||||||| | |||||||||||||||||||| Sbjct 837 TGGGACATTAGGGCCAACAAAATCGTGCATGAATACATCCGAGATCTTGGGCCAATTCTT 896 Query 911 GATGTTGAGTTTATCGCGGGTGGGAAGCAGTTTATCTCGTCAAGTGATGTTTCTGGCAGA 970 |||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||| Sbjct 897 GATGTTGAGTTTATCGCGGGTGGGAAGCGGTTTATCTCTTCAAGTGATGTGTCTGGCAGA 956 Query 971 AATATAAGTGAGAATGCTGTTATAGTTTGGGATATTTCGAGAGAGGTTCCTTTATCTAAT 1030 ||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||| Sbjct 957 AATATAAGTGAGAATGCGGTTATGGTTTGGGATATTTCGAGAGAGGTTCCTCTATCTAAT 1016 Query 1031 CAGGTCTATGTAGAAGCATACACATGCCCTTGCATCAAACGTCACCCGCAAGACCCAGTC 1090 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1017 CAGGTCTATGTAGAAGCATACACATGCCCCTGCATCAAACGTCACCCGCAAGACCCAGTC 1076 Query 1091 TTCATCGCGCAATCACACGGGAACTACACAGCAATCTTCTCAACAAACCCACCTTTCAAA 1150 |||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||| Sbjct 1077 TTCATCGCCCAATCACACGGGAACTACACTGCAATCTTCTCAACAAGCCCACCTTTCAAG 1136 Query 1151 CTCAACAAATACAAGAGATTCGAAGGTCACTGGGTTGCAGGTTTCCCAATCAAATGCAAC 1210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1137 CTCAACAAATACAAGAGATTCGAAGGTCACTGGGTTGCAGGTTTCCCAATCAAATGCAAC 1196 Query 1211 TTCAGCCCGGATGGAGAAACCTTAGCCTCTGGCTCATCTGACGGTTCTGTATACATGTAC 1270 ||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 1197 TTCAGCCCGGACGGAGAAACCTTAATCTCTGGCTCATCTGACGGTTCCATATACATGTAC 1256 Query 1271 -GACTACAAATCCACTGCGCTCATTAAGAAGCTCAAAGCTTATGAACAGCCCTGCGTTAA 1329 | || ||||||||||| |||||||||||||||||| ||||||||||||||||||||| | Sbjct 1257 AG-CTGCAAATCCACTGAGCTCATTAAGAAGCTCAAGGCTTATGAACAGCCCTGCGTTGA 1315 Query 1330 TGTGTCATACCACCCCGTTTTACCTAACGTGGTCGCGGCTTGTAGCTGGAATGGACAAGT 1389 ||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 1316 TGTGTCATACCACCCAGTTTTGCCTAACGTGGTCGCAGCTTGTAGCTGGAATGGACAAGT 1375 Query 1390 CTCTGTTTTTGAGTGATTCCACAATGGTTAGTATTA 1425 ||||||||||||||||| |||||||||||||||||| Sbjct 1376 CTCTGTTTTTGAGTGATCCCACAATGGTTAGTATTA 1411 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62696543270 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5