BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54520.1
Length=1672
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950095 jgi|Araly1|950095|scaffold_801982.1 2069 0.0
> Ahg950095 jgi|Araly1|950095|scaffold_801982.1
Length=1411
Score = 2069 bits (1120), Expect = 0.0
Identities = 1320/1416 (93%), Gaps = 16/1416 (1%)
Strand=Plus/Plus
Query 15 TCGACTTCAACTTTCCGATGGATCTCATCTGCAATTCGTATGCCAATGACTCCGACGACG 74
|||| ||||| |||||||||||||| || ||||||||||||| |||||||||||||||||
Sbjct 7 TCGATTTCAAGTTTCCGATGGATCTTATTTGCAATTCGTATGGCAATGACTCCGACGACG 66
Query 75 AACCTGAGCCAGTGACCAATGAGCGATTAACATCTAAAATCGCCGCAGCACCGTCAATTC 134
||||||| |||||| |||||||||| ||||||||| ||||||| | |||||||| ||||
Sbjct 67 AACCTGAACCAGTGTCCAATGAGCGTTTAACATCTGGAATCGCCACCGCACCGTCTATTC 126
Query 135 CTTCTAAGCGTCCATATCCAGTCCCGGAGGAGCGACAATACAAACCACCGCGTAGACCGT 194
|||| |||||||||||||||||||||||||||||||| | ||||||| ||||||||||||
Sbjct 127 CTTCGAAGCGTCCATATCCAGTCCCGGAGGAGCGACATTCCAAACCATCGCGTAGACCGT 186
Query 195 ATCCTCCACACGGTTCCTATTCGGAAT-CTCAAACC-AGCTCGTCGTTTTCAATACCGGT 252
||||||| || ||||||||||| | || ||| ||| ||||| ||| |||| | ||
Sbjct 187 ATCCTCCTCAAGGTTCCTATTCTG-ATCCTC-CACCGAGCTCTTCGGTTTC---A---GT 238
Query 253 TCCGGTTCCGGTTCCGGTTCCAGGCCGGTACGTATCCAAGAGAGAGAGATCACTTCTAGC 312
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 239 GCCGGTTCCGGTTCCGGTTCCAGGCCGGTACGTATCTAAGAGAGAGAGATCACTTCTAGC 298
Query 313 CTCCCTTTCAACGATTCCGACTCCAGATCAAAGTTCCGATTTGAGTCAGAAACCTTATAG 372
|||| |||||||||||||||||| |||||||||||||||||||| ||||||||| | |||
Sbjct 299 CTCCGTTTCAACGATTCCGACTCAAGATCAAAGTTCCGATTTGAATCAGAAACCCTCTAG 358
Query 373 CTCTCCTACTGTTCTTGGGAGCATCTCAGATTCTGATGTACCTCGCCATGTTCTATCTTC 432
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 359 CTCTCCTACTGTTCTTGGGAGCATCTCAGATTCTGATGTGCCTCGCCATGTTCTATCTTC 418
Query 433 GGTTAGACATAGACCAAAAGGATCCTCGTTGCAAACCGAAATGCCTAGTAGAATGTCGAT 492
||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 419 GGTTACACATCGACCAAAAGGATCCTCGTTGCGAACCGAAATGCCTAGTAGAATGTCGAT 478
Query 493 TTCGTTAACCGGCCATACAAAGGCTGTTACTGCTATTGATTGGTCTACAAGTCATGTTCA 552
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTCGTTGACCGGCCATACAAAGGCTGTTACTGCTATTGATTGGTCTACAAGTCATGTTCA 538
Query 553 TCTTCTTGCTTCTGCGGGGCTTGATGGTGCT-GTTTACGTGTGGAATGTGTGGAGTAATG 611
||||||||||||||||||||||||| ||| | | ||||||||||||||| ||||| ||||
Sbjct 539 TCTTCTTGCTTCTGCGGGGCTTGATAGTG-TCGCTTACGTGTGGAATGTTTGGAGCAATG 597
Query 612 ATAAGAAGAAAGTACGGGCTTTTCTCCATCATAATGCACCGGTTAAAGATGTGAAGTGGT 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 ATAAGAAGAAAGTACGGGCTTTTCTCCATCATAATGCACCGGTTAAAGATGTGAAGTGGT 657
Query 672 CAAAGCAAGGGTTATCGTTGCTTTCTTGTGGATATGACTGCACGTCGAGACTGTTTGATG 731
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 658 CAAAGCAAGGGTTATCGTTGCTTTCTTGTGGATATGACTGCATGTCGAGACTATTTGATG 717
Query 732 TTGAAAGAGGGGTAGAGACACAATCTTTCAAGGAGGATGAAGTTGTTGGAGTTGTTAAGT 791
|||||||||||||||||| ||| ||||||||||||||| | ||| |||||||||||||||
Sbjct 718 TTGAAAGAGGGGTAGAGATACAGTCTTTCAAGGAGGATCAGGTTATTGGAGTTGTTAAGT 777
Query 792 TTCA-TCCAGATAATTGTAACGTGTTTCTTTCTGGTGGATCAAAGGGAAGTCTTAGATTA 850
| || ||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 778 T-CAATCCAGATCATTGTAGCGTGTTTCTTTCTGGAGGATCAAAGGGAAGTCTTAGATTA 836
Query 851 TGGGACATTAGAGCCAATAAATTCGTGCATGAATATGTTAGAGATCTTGGGCCAATTCTT 910
||||||||||| ||||| ||| ||||||||||||| | ||||||||||||||||||||
Sbjct 837 TGGGACATTAGGGCCAACAAAATCGTGCATGAATACATCCGAGATCTTGGGCCAATTCTT 896
Query 911 GATGTTGAGTTTATCGCGGGTGGGAAGCAGTTTATCTCGTCAAGTGATGTTTCTGGCAGA 970
|||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||
Sbjct 897 GATGTTGAGTTTATCGCGGGTGGGAAGCGGTTTATCTCTTCAAGTGATGTGTCTGGCAGA 956
Query 971 AATATAAGTGAGAATGCTGTTATAGTTTGGGATATTTCGAGAGAGGTTCCTTTATCTAAT 1030
||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 957 AATATAAGTGAGAATGCGGTTATGGTTTGGGATATTTCGAGAGAGGTTCCTCTATCTAAT 1016
Query 1031 CAGGTCTATGTAGAAGCATACACATGCCCTTGCATCAAACGTCACCCGCAAGACCCAGTC 1090
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1017 CAGGTCTATGTAGAAGCATACACATGCCCCTGCATCAAACGTCACCCGCAAGACCCAGTC 1076
Query 1091 TTCATCGCGCAATCACACGGGAACTACACAGCAATCTTCTCAACAAACCCACCTTTCAAA 1150
|||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1077 TTCATCGCCCAATCACACGGGAACTACACTGCAATCTTCTCAACAAGCCCACCTTTCAAG 1136
Query 1151 CTCAACAAATACAAGAGATTCGAAGGTCACTGGGTTGCAGGTTTCCCAATCAAATGCAAC 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 CTCAACAAATACAAGAGATTCGAAGGTCACTGGGTTGCAGGTTTCCCAATCAAATGCAAC 1196
Query 1211 TTCAGCCCGGATGGAGAAACCTTAGCCTCTGGCTCATCTGACGGTTCTGTATACATGTAC 1270
||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1197 TTCAGCCCGGACGGAGAAACCTTAATCTCTGGCTCATCTGACGGTTCCATATACATGTAC 1256
Query 1271 -GACTACAAATCCACTGCGCTCATTAAGAAGCTCAAAGCTTATGAACAGCCCTGCGTTAA 1329
| || ||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1257 AG-CTGCAAATCCACTGAGCTCATTAAGAAGCTCAAGGCTTATGAACAGCCCTGCGTTGA 1315
Query 1330 TGTGTCATACCACCCCGTTTTACCTAACGTGGTCGCGGCTTGTAGCTGGAATGGACAAGT 1389
||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1316 TGTGTCATACCACCCAGTTTTGCCTAACGTGGTCGCAGCTTGTAGCTGGAATGGACAAGT 1375
Query 1390 CTCTGTTTTTGAGTGATTCCACAATGGTTAGTATTA 1425
||||||||||||||||| ||||||||||||||||||
Sbjct 1376 CTCTGTTTTTGAGTGATCCCACAATGGTTAGTATTA 1411
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62696543270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5