BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54530.1
Length=770
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495533 jgi|Araly1|495533|fgenesh2_kg.8__1349__AT5G54530.1 1061 0.0
> Ahg495533 jgi|Araly1|495533|fgenesh2_kg.8__1349__AT5G54530.1
Length=711
Score = 1061 bits (574), Expect = 0.0
Identities = 670/714 (94%), Gaps = 16/714 (2%)
Strand=Plus/Plus
Query 1 GCCGTGaaaaaa-aaaaCTTtctctctttctctctctctctctctcAGTGAAAAGCTATG 59
||||| |||||| |||||||| | ||| ||||||||||||||| ||||||||||||||||
Sbjct 1 GCCGTAAAAAAATAAAACTTT-TATCTCTCTCTCTCTCTCTCTATCAGTGAAAAGCTATG 59
Query 60 AACAAACTCATCTCCCGTATGATCCTTCTCCTCACCACTCTCCGCCTCTCTTTATCCCTC 119
||||| |||||||||||||||||||||||| ||| |||||||| ||||||||| || |||
Sbjct 60 AACAATCTCATCTCCCGTATGATCCTTCTCTTCATCACTCTCCTCCTCTCTTTCTCTCTC 119
Query 120 TCCTCGCCGTCGTACCCAACGGTCCACGACGTTCTCCGATCAGAAGGTCTCCCGGCGGGA 179
|||||||||| || ||||||||||| || |||||||||||| |||||||||||||||||
Sbjct 120 TCCTCGCCGTATTATCCAACGGTCCATGAGGTTCTCCGATCAAAAGGTCTCCCGGCGGGA 179
Query 180 CTTTTACCTCAAGAGGTTGATTCTTATATTCTTCACAACGACGGTCGTCTCGAGGTTTTC 239
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTTTTACCGCAAGAAGTTGATTCTTATATTCTTCACAACGACGGTCGTCTCGAGGTTTTC 239
Query 240 CTCGCGGCGCCGTGTTACGCTAAATTCGAGACGAACGTGCACTTTGAAGCCGTCGTAAGA 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 240 CTCGCGGCGCCGTGTTACGCTAAATTCGAGACGAACGTGCACTTTGAAGCCGTCGTGAGA 299
Query 300 GGGAATCTGAGCTATGGGAGCCTCGTCGGAGTAGAAGGGCTATCGCAAAAAGAGCTCTTC 359
| |||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 300 GCGAATCTCAGCTATGGGAGCCTCATCGGAGTAGAAGGGCTATCGCAGAAAGAGCTCTTC 359
Query 360 TTGTGGCTTCAGGTGAAAGATATCGTCGTCGAGAATCCAAATTCCGGCGTCATTGTGTTT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTGTGGCTTCAGGTGAAAGATATCGTCGTCGAGAATCCAAATTCCGGCGTCATTGTGTTT 419
Query 420 GATATCGGCGTTGCTTTTAAACAGCTTTCGCTTTCTCTCTTTGAAGACCCTCCCAAGTGT 479
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 420 GATATCGGCGTTGCTTTTAAACAGCTTTCGCTCTCTCTCTTTGAAGACCCACCCAAGTGT 479
Query 480 AAACCTGACGGTGTTTTgaagaaaaagatgagaagagatagaggatttgaagctca---- 535
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AACCCTGACGGTGTTTTGAAGAAAAAGATGAGAAGAGATAGAGGATTTGAAGCTCAAATA 539
Query 536 -ga-a-gtagagagaaagaCCTA-AGG--CCATATTGTCCATTTGAAAATT-CCTAAATT 588
|| | ||||||||||||||||| ||| || |||||||||||||||||| || |||||
Sbjct 540 TGAGAAGTAGAGAGAAAGACCTAGAGGAGCCCGATTGTCCATTTGAAAATTTCC-AAATT 598
Query 589 GTAAACTAATCAGAAAGATTAGTATGCTAATTATATGAGTAGAATAGAATTTTGTTTGAG 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GTAAACTAATCAGAAAGATTAGTATGCTAATTATATGAGTAGAATAGAATTTTGTTTGAG 658
Query 649 AGTTCTTGTA-AAGATGAGACTCCCCATGTTCTATTCTATGTTTTGTGTTTTAG 701
|||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGTTCTTGTAGAA-ATGAGACTCCCCATGTTCTATTCTATGTTTTGTGTTTTAG 711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28401573165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5