BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54540.1
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495534 jgi|Araly1|495534|fgenesh2_kg.8__1350__AT5G54540.1 1618 0.0
> Ahg495534 jgi|Araly1|495534|fgenesh2_kg.8__1350__AT5G54540.1
Length=1072
Score = 1618 bits (876), Expect = 0.0
Identities = 1026/1094 (94%), Gaps = 28/1094 (3%)
Strand=Plus/Plus
Query 104 ATCATGGGAGGAGGAAGAGCTATGGCGACGGCGGCGAAGGTTGCTGGAATCGGAGTTGGT 163
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1 ATCATGGGAGGAGGAAGAGCTATGGCGACGGCAGCGAAGGTTGCTGGAATCGGAGTTGCT 60
Query 164 AAAGGAGGATTCA--AG-GGATTTGGATTTCCTCCGGCGACTGAGCAGTTTCGTGTTAAA 220
||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 AAAGGAGGATTCAGGGGAGGATTTGGATTTCCTCCGGCGACTGAGCAGTTTCGGGTTAAA 120
Query 221 ACCGCGGCGGCTGCGGCGTCGTCTAAACCGGTTTCGGCTTCGATTACATCGGCGGTTCAT 280
|||||||| | |||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 ACCGCGGC-G--GCGGCGGCGTCTAAACCGGTTTCGGCTTCGATTTCATCGGCGGTTCAT 177
Query 281 CCTTCTGTTGAAGAAGATGGGATGATTATGCAGAGACCGGTTTGGGATGATTGGGAATTT 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CCTTCTGTTGAAGAAGATGGGATGATTATGCAGAGACCGGTTTGGGATGATTGGGAATTT 237
Query 341 GCTGAAGAAGAACCGATTCCTAGGGTTGTTTTTAGCAAACCTCCTAGTCTTGAAGAAGCT 400
||||||||||| || |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 238 GCTGAAGAAGAGCCAATTCCTAGAGTTGTTTTTAGCAAACCTCCTAGTCTTGAAGAGGCT 297
Query 401 AAAGAAGCTACTGAAGATCTTAAAGAAGCAATTAATTTGGTGTATATGTCATCTCCAAAG 460
|||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 298 AAAGAAGCTACTGAGGATCTGAAAGAAGCAATTAATATGGTGTATATGTCATCTCCAAAG 357
Query 461 TCGTCTGCTGCTATGGAAGGATCAAATGATGGTGGCT-CTGTTTCCAAAATGCTCTCTGG 519
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||
Sbjct 358 TCGTCTGCTGCTATGGAAGGATCAAATGATGGTGG-TGCTGTTTCCAAAATGCTCTCAGG 416
Query 520 TTTTCAATCTTCTGAGAACAGAGCTGTTGAATCAGCTGTTCCACAAGTTGCTCTTCAAGC 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TTTTCAATCTTCTGAGAACAGAGCTGTTGAATCAGCTGTTCCACAAGTTGCTCTTCAAGC 476
Query 580 ATTTGCTTTTCTAAGTGAGAACACTGCTGCGCAGACTGTTGTTGCTTCCATTGCGAGTGA 639
|||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||| ||||
Sbjct 477 ATTTGCTTTTCTGAGTGAAAACACCGCTGCACAGACTGTTGTTGCTTCCATTGCGTGTGA 536
Query 640 CCCAAAAGTATGGGATGCTGTTATGGAGAATAAGGATCTCATGAAATTTCTTCAGACCAA 699
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 537 CCCAAAAGTATGGGATGCTGTTATGGAGAATAAGGATCTCATGAAATTTCTCCAGACCAA 596
Query 700 CAAAACCGCTGTTTCCTCTCAAGTTGAATCTGACAATGACGACCAATCTGAACGTTCGAG 759
|| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TAATACTGCTGCTTCCTCTCAAGTTGAATCTGACAATGACGACCAATCTGAACGTTCGAG 656
Query 760 CACGACTGAGTGTGAAGTCGTGGAAACTAAGCCAATGGAACTCTTAGAGATTCTGCAGGA 819
|||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 657 CACGACGGAGTGTGAAGTCATGGAAACTAAGCCGATGGAACTCTTAGAGATTCTGCAGGA 716
Query 820 CATGAAGCTAAAAGCTGTTCGGTTGATGGAAAATGTATCTTCCTACTTTGGTGACTTGTT 879
||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||||||
Sbjct 717 CATGAAGCTAAAAGCTGTTCGATTGATGGAAAATGTCTCTTCTTACTTTGGGGACTTGTT 776
Query 880 TGGGTTAGGATCAGTTACAGAAGATGGAAAAGACAAGAAGCAGACGTTGTTCAATGACCC 939
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 777 TGGGTTAGGATCAGTTACAGAGGATGGGAAAGACAAGAAGCAGACGTTGTTCAACGACCC 836
Query 940 TCGTTCTCTGTTTGGATTAGCTGTGGTTGTTATCTTCATGGTAGTTTTAAAACGTGCTTA 999
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 837 TCGTTCTCTGTTTGGATTAGCTGTGGTTGTCATCTTCATGGTAGTTTTAAAACGTGCTTA 896
Query 1000 AGATCTCTTGTTCCTGAATTCGCCGATATAGCGGAAAAACAACTACGTACTCTGTGTTAT 1059
|| |||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 897 AGGTCTCTTGTTCCTGAATTCGCCGATATAGCGGAAAAACAACTACGTACT-T-TGT--- 951
Query 1060 CGTTTAAACTCTGTTTCATTCCTTTGCTTTGTTATCGTTTAAACTCTGTTTTTTGTTTGA 1119
| | ||| |||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 952 -G---A---TCT----CATTCCTTTGCTTTCTTATCGTTTAAACTCTGTTTTTTGTTTAA 1000
Query 1120 TTGGAATGATTTGGAACCGTCAT-TGGATCTTTTCATAATT-TATAAATAAAAAGATCCT 1177
|||||||| |||||||||||| | |||||||||||||| || || |||||||||||||||
Sbjct 1001 TTGGAATGGTTTGGAACCGTC-TCTGGATCTTTTCATA-TTATAAAAATAAAAAGATCCT 1058
Query 1178 TTGGATGTTTTATC 1191
||||||||||||||
Sbjct 1059 TTGGATGTTTTATC 1072
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44680058724
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5