BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54550.1
Length=1160
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495535 jgi|Araly1|495535|fgenesh2_kg.8__1351__AT5G54550.1 1279 0.0
Ahg495613 jgi|Araly1|495613|fgenesh2_kg.8__1429__AT5G55270.1 725 0.0
Ahg495358 jgi|Araly1|495358|fgenesh2_kg.8__1174__AT5G52940.1 699 0.0
Ahg495522 jgi|Araly1|495522|fgenesh2_kg.8__1338__AT5G54320.1 669 0.0
Ahg493544 jgi|Araly1|493544|fgenesh2_kg.7__2977__AT4G13680.1 431 6e-120
Ahg497341 jgi|Araly1|497341|fgenesh2_kg.236__1__AT5G55880.1 403 1e-111
> Ahg495535 jgi|Araly1|495535|fgenesh2_kg.8__1351__AT5G54550.1
Length=1104
Score = 1279 bits (692), Expect = 0.0
Identities = 989/1126 (88%), Gaps = 46/1126 (4%)
Strand=Plus/Plus
Query 20 GCCTCTCGAGGCTTCGAC-TTGGGAAACCTGCGTCCGTGAGATCCTCTGTTCTGATTCTC 78
|||||||||||||||| | ||||||||||||||||||||||| || |||
Sbjct 3 GCCTCTCGAGGCTTCG-CATTGGGAAACCTGCGTCCGTGAGA--------TC-----CTC 48
Query 79 TCTAATGGCTTCTCATCATCCTC-GCTGCAAACTCCTCCGTGTTCCATCATCTGCGCCAA 137
||||||||||||||||| ||||| | |||| |||||||| ||| |||||||||||||| |
Sbjct 49 TCTAATGGCTTCTCATCTTCCTCAG-TGCAGACTCCTCCATGTACCATCATCTGCGCCGA 107
Query 138 TCCTTGTGGAGCGGGTCTCGGAAAACTCGTGATTTTGAATGCTAATGAGAGTGATTACAC 197
|||||||||||||| |||||| |||||||||||| |||||||||||||| || | | |||
Sbjct 108 TCCTTGTGGAGCGGATCTCGGGAAACTCGTGATTATGAATGCTAATGAGGGTAAATGCAC 167
Query 198 TGATTTGGAAAAGAAGGTGCCGATGGAGTTGGTAGATAGTGATCCAATGGTGACGATAGG 257
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 168 TGATTTGGAAAAGAAGGTGCCTCTGGAGTTGGTGGATAGTGATCCAATGGTGACGATAGG 227
Query 258 GGCATCTCATGGCTGGGTAGCTACTTTGAAGGAGGACGGAATATTGCGTCTCCAAGACGA 317
||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||| ||
Sbjct 228 GGCGTCTCATGGCTGGGTAGCTACTTTGAAGGACGACGGTGTAGTGCGTCTCCAAGATGA 287
Query 318 TCTAAACCC-TTATGCATCAGATACAAACCCTAAACGCA-TCTCTCTGCCTCCTCTTGTA 375
|||||||| | ||| |||||| ||||||||||||||| || | |||||||||||||||
Sbjct 288 CCTAAACCCGGT-TGCTTCAGATTCAAACCCTAAACGCATTC-CCCTGCCTCCTCTTGTA 345
Query 376 ACTCTGCCTCGTTGCCAAACTCAAATCGTTACCAATGTGTCAATGTCCTTACCTTCTCCT 435
||| |||||||||||||||| ||| | || ||||| ||| | ||||||| ||||||||
Sbjct 346 ACTTTGCCTCGTTGCCAAACCCAAGTTGTGACCAACGTGGCCATGTCCTCGTCTTCTCCT 405
Query 436 GAGGATGAGGACTGTGTTGTGGCTGTCAAGTTCTTGGGGCCTCAACTCAGCTTTTGCAGA 495
|||||||| |||||||| |||||| ||||||||||||||||||||||||||||||| |||
Sbjct 406 GAGGATGATGACTGTGTCGTGGCTATCAAGTTCTTGGGGCCTCAACTCAGCTTTTGTAGA 465
Query 496 CCGGCTA-AAAGCAACTCCGAGTGGACCAACATCAAG-ATCGCAAACCCTAGCTTCTTCT 553
||||| | |||| ||||||||||||| ||||||| || ||||||||||| |||||||||
Sbjct 466 CCGGC-ACAAAGTAACTCCGAGTGGATCAACATC-AGAATCGCAAACCCCGGCTTCTTCT 523
Query 554 CCTCACGTGTCATGTTTTCTAAGAAAGATGAGATGTTTCGTATTCCTGGGTCTGGAGGCC 613
|||| |||||||||| ||| ||||||||||| |||||||||||||| |||||||||||||
Sbjct 524 CCTCCCGTGTCATGTATTCCAAGAAAGATGACATGTTTCGTATTCCCGGGTCTGGAGGCC 583
Query 614 ACCTCATCGGATCATGGGATCTCCGCACAGAGGATCACAATCCCAAGATTCAGAGGCTGC 673
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 584 ACCTCATCGGATCATGGGATCCCCGCACAGAGTATCACAATCCCAAGATTCAGAGGCTGC 643
Query 674 GATTCCGAAACCTTCCCGAGCTGCCTAGGGCCAAGCGGGAGCTTCTAGATTCGTGCTACA 733
|||||||||||||||||||||| |||| | ||||| |||||||||| |||||||| | ||
Sbjct 644 GATTCCGAAACCTTCCCGAGCTTCCTAAGACCAAGAGGGAGCTTCTGGATTCGTGTTGCA 703
Query 734 GGAGTGAACATTTGGTGGAGTCTCAATCCACTGGTGAA-CTTTTCTTGGTAAAGCGGTAC 792
|||||||||| ||||||||||| | |||||| |||||| | || |||||||||| |||||
Sbjct 704 GGAGTGAACACTTGGTGGAGTCACGATCCACCGGTGAAACGTT-CTTGGTAAAGTGGTAC 762
Query 793 AAGAAGGCCACCACCAGAGATACGGTAAAAATGAAAACACAAGGTGTAATGGTGTTCAAG 852
|||||||||||||||| |||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 763 AAGAAGGCCACCACCAAAGATACGGTAAAAATGAAAACAAAAGCTATAATGGTGTTCAAG 822
Query 853 CTAGACGAAAAAGGAAACGCTGTGTACACTCAAGACATTGGAGATCTTTGCATTTTTCTC 912
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 823 CTAGACGAAAAAGGAAACGCTGTTTACACTAAAGACATTGGAGATCTTTGCATTTTTCTC 882
Query 913 TCAAAGTCTGAACCTTTTTGTTCTAGCAGCTCCAGGTTCCCTAACTACGTTGATATATAT 972
||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||| |
Sbjct 883 TCAAAGTCTGAACCTTTCTGTTCTAGCAGCTCCATGTTCCCTAACTGCGTTGATATATGT 942
Query 973 GATGTCGACGAAGTAGCATTTGCCTGTCTGGAGTATGA-TGACCCTATCACTGGTGTAAC 1031
||||||||||||| |||| |||||| |||||||||||| | || | | | ||||| |||
Sbjct 943 GATGTCGACGAAGCAGCAATTGCCTCTCTGGAGTATGACT--CCAT-T-ATTGGTGGAAC 998
Query 1032 T-AGTAC-AAACA--G--------G-GCACCTTACCATATTCCACCTCAAAATATAGACT 1078
| | || ||| | | | ||||||||||||||||||||||||||||||| ||
Sbjct 999 TTACTATTAAAAATTGTTCAAAACGAGCACCTTACCATATTCCACCTCAAAATATAGTCT 1058
Query 1079 AGTTGTT-GTTTGGGATTTAGAGTATGAGTCTAGAGTCTGtttttt 1123
|| | || ||||| || ||||||| |||||||||||||||| ||||
Sbjct 1059 AGCTATTAGTTTGCGAGTTAGAGTCTGAGTCTAGAGTCTGTCTTTT 1104
> Ahg495613 jgi|Araly1|495613|fgenesh2_kg.8__1429__AT5G55270.1
Length=904
Score = 725 bits (392), Expect = 0.0
Identities = 705/851 (83%), Gaps = 41/851 (5%)
Strand=Plus/Plus
Query 41 GGAAACCTGCGTCCGTGAGATCCTCTGTTCTGATTCTCTCTAATGGCTTCTCATCATCCT 100
||||||||| || || |||||||| | || ||||||||||||||||||| | ||||
Sbjct 76 GGAAACCTGGGTTGGTAAGATCCTC--TCCT-CCTCTCTCTAATGGCTTCTCAACTTCCT 132
Query 101 CGCTGCAAACTCCTCCGTGTTCCATCATCTG-CGCCAATCCTTGTGG-AGCGGGTCTCGG 158
| ||||||| ||||| ||| ||||||| || ||| |||||||||| || |||||||||
Sbjct 133 TGTTGCAAACCCCTCCTTGTACCATCAT-TGACGCTGATCCTTGTGGAAG-GGGTCTCGG 190
Query 159 AAAACTCGTGATTTTGAAT-GC-TAATG-AGAGTGAT-TACACTGATTTGGAAAAGAAGG 214
||||||||| || ||| | ||||| | | | || | ||||||||||||||||||||
Sbjct 191 AAAACTCGT--CGTTAAATATCATAATGAATA-TCATCT-CACTGATTTGGAAAAGAAGG 246
Query 215 TGCCGATGGAGTTGGTAGATAGTGATCCAATGGTGACGATAGGGGCATCTCATGGCTGGG 274
|| | ||||||||||| |||| | |||||||| ||||| ||| |||| ||||| ||||
Sbjct 247 TGGCTATGGAGTTGGTGGATA-T--TCCAATGGCAACGATCGGGTCATCCCATGGTTGGG 303
Query 275 TAGCTACTTTGAAGGAGGACGGAATATTGCGTCTCCAAGACGATCTAAACCCTTATGCAT 334
|||||||||||||||| ||||||||| ||||||||||||| ||||||||||| ||||||
Sbjct 304 TAGCTACTTTGAAGGAAGACGGAATACTGCGTCTCCAAGATGATCTAAACCCAAATGCAT 363
Query 335 CAG-ATACA-AACCCTAAACGCA-TCTCTCTGCCTCCTCTTGTAACTCTGCCTCGTTGCC 391
| | ||||| || || ||||| | || | ||||||||||||||||||||||||| |||||
Sbjct 364 C-GTATACAGAA-CCAAAACGTATTC-CCCTGCCTCCTCTTGTAACTCTGCCTCATTGCC 420
Query 392 AAACTCAAATCGTTACCAATGTGTCAATGTCCTTACCTTCTCCTGAGGATGAGGACTGTG 451
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 421 AAACTCAAATCGTTACCAATGTGTCAATGTCCTCATCTTCTCCTGAGGATGAGGACTGTG 480
Query 452 TTGTGGCTGTCAAGTTCTTGGGGCCTCAACTCAGCTTTTGCAGACCGGCTAAAAGCAACT 511
| |||||||||||||||||||| |||||| | ||||||||||||||||||||||| || |
Sbjct 481 TCGTGGCTGTCAAGTTCTTGGGACCTCAAATAAGCTTTTGCAGACCGGCTAAAAGTAATT 540
Query 512 CCGAGTGGACCAACATCAAGA-TCGCAAACCC-TAGCTTCTTCTCCTCACGTGTCATGTT 569
||||||||| |||||||| || |||||||||| | |||||| |||||| |||||||||||
Sbjct 541 CCGAGTGGATCAACATCA-GAATCGCAAACCCCT-GCTTCTACTCCTCTCGTGTCATGTT 598
Query 570 TTCTAAGAAAGATGAGATGTTTCGTATTCCTGGG-TCTGGAGGCCACCTCATCGGATCAT 628
||| ||||||||||||||||||| || | | || ||||||||||| |||| |||||||
Sbjct 599 TTCGGAGAAAGATGAGATGTTTCGCATAC-TCGGATCTGGAGGCCATATCATTGGATCAT 657
Query 629 GGGATCTCCGCACAGAGGATCACAATCCCAAGATTCAGAGGCTGC-GATTCCGAAACCTT 687
||||||||| |||| || | || || |||| |||||||| ||| | |||| |||||||
Sbjct 658 GGGATCTCCACACACAGAAGCAAAA-CCCAT--TTCAGAGGTTGCAG-TTCCTAAACCTT 713
Query 688 CCCGAGCTGCCTAGGGCCAAGCGGGAGCTTCTAGATTCGTGCTACAGGAGTGAACATTTG 747
||| ||||| | | | |||| || |||||| | ||||||||||||| || ||||| |||
Sbjct 714 CCCAAGCTGACAAAGACCAAACGAGAGCTTATGGATTCGTGCTACAAAAGCGAACACTTG 773
Query 748 GTGGAGTCTC-AATCCACTGGTGAA-CTTTTCTTGGTAAAGCGGTACAAGAAGGCCACCA 805
||||||| || |||| |||||| |||| ||| || ||| |||| | ||| ||| |
Sbjct 774 TTGGAGTCAAGAA-CCACCGGTGAAACTTT-CTTAGTTAAGTGGTATAGGAAAGCCGTCT 831
Query 806 CCAGAGATACGGTAAAAA-TGAAAACACAAGGTGTAATGGTGTTCAAGCTAGACGAAAAA 864
|||| || | | ||| |||||||| ||| | |||||||||||||||||||| | |||
Sbjct 832 GGAGAGGTATG-TCGAAACTGAAAACAAAAGCTTTAATGGTGTTCAAGCTAGACTATAAA 890
Query 865 GGAAACGCTGT 875
|| ||||||||
Sbjct 891 GGGAACGCTGT 901
> Ahg495358 jgi|Araly1|495358|fgenesh2_kg.8__1174__AT5G52940.1
Length=1260
Score = 699 bits (378), Expect = 0.0
Identities = 755/929 (81%), Gaps = 58/929 (6%)
Strand=Plus/Plus
Query 37 CTTGGGAAACCTGCGTCCGTGAGATCCTCTGTTCTGATTC-TCTCTAATGGCTTCTCATC 95
||||||||||||| || || ||||| ||| ||| | | | ||||||||||||||| |
Sbjct 7 CTTGGGAAACCTGTGTTTGTAAGATCTTCTCTTC---TCCAT-TCTAATGGCTTCTCAAC 62
Query 96 ATCCTCGCTGCAAACT-CCTCCGTGT-TC-CATCATCTGCGCCAATCCTTGTGG----AG 148
|||| |||||||| | ||||| | | || | || || |||| |||||||||| ||
Sbjct 63 TTCCTTGCTGCAAA-TCCCTCC-T-TATCACGTCTTCAGCGCTGATCCTTGTGGATCAAG 119
Query 149 -----CGGGTCTCGGAAAACTCGTGATTTTGAATGCTAATG-AGAGTGATTA-CACTGAT 201
||| |||||| |||||| | ||||| || ||||||| | | ||| | |||| ||
Sbjct 120 ATACCCGGATCTCGGTAAACTCATCATTTTCAAAGCTAATGAATA-TGA-CAGCACTCAT 177
Query 202 TTGGAAAAGAAGGTGCCGATGGAGTTGGTAGATAGTGA-TCCAATGGTGACGATAGGGGC 260
|||||||||||||| || ||||||||||||||| | | || ||||| ||||| ||| |
Sbjct 178 TTGGAAAAGAAGGTTCCAATGGAGTTGGTAGATGGAAAGGCC-ATGGTAACGATCGGGTC 236
Query 261 ATCTCATGGCTGGGTAGCTACTTTGAAGGAGGACGGAATATTGCGTCTCCAAGACGATCT 320
|||||||||||||||||||||||||||||| || ||| || |||||||||||||||||||
Sbjct 237 ATCTCATGGCTGGGTAGCTACTTTGAAGGACGATGGAGTAGTGCGTCTCCAAGACGATCT 296
Query 321 AAACCCTTAT-GCATCAGATACAAACCCTAAACGCATCTCTC-TGCCTCCTCTTGTAACT 378
||||| | | ||||| |||||| | || |||||||| |||| |||||||||||||||||
Sbjct 297 AAACC-TGGTTGCATCTGATACAGATCCGAAACGCAT-TCTCCTGCCTCCTCTTGTAACT 354
Query 379 CTGCCTCGTTGCCAAACTCAAATCGTTACCAATGTGTCAATGTC--CTTACCTTCTCCTG 436
||||||| ||||||||| ||| | || ||||| ||| | ||||| ||| | ||||||||
Sbjct 355 CTGCCTCATTGCCAAACCCAAGTTGTCACCAACGTGGCCATGTCTTCTT-C-TTCTCCTG 412
Query 437 AGGATGAGGACTGTGTTGTGGCTGTCAAGTTCTTGGGGCCTCA-ACTCAGCTTTTGCAGA 495
||||||| |||||||||||||||||||||||||| || ||||| | ||||||| || |||
Sbjct 413 AGGATGAAGACTGTGTTGTGGCTGTCAAGTTCTTAGGACCTCAGA-TCAGCTTATGTAGA 471
Query 496 CCGGCTAAAAGCAACTCCGAGTGGACCAACATCAAGA-TCGCAAACCC-TAGCTTCTTCT 553
|| ||| |||| |||||| |||||| |||||||| || ||| |||||| | | ||| ||
Sbjct 472 CCAGCTCAAAGAAACTCCCAGTGGATCAACATCA-GAATCGAAAACCCAT-GTTTCCACT 529
Query 554 CCTCACGTGTCATGTTTTCTAAGAAAGATGAG-ATGTTTCGTATTCCTGGGTCTGGAGGC 612
|||| | ||| |||||||| |||||||||| | ||||||| ||||| || ||||||||
Sbjct 530 CCTCCCCTGTTATGTTTTCCAAGAAAGATG-GCATGTTTCACATTCCCGGATCTGGAGGT 588
Query 613 CACCTCATCGGATCATGGGATCTCCGCA--CAGAGGATCACAATCCCAAGATTCAGAGGC 670
|||||||| |||||||||||||||| || || | || || || |||||||||||||||
Sbjct 589 CACCTCATTGGATCATGGGATCTCCACAAACATAAGAACA-AA-CCCAAGATTCAGAGGT 646
Query 671 TGCGATTCCGAAACCTTCCCGAGCTG-CCTAGGGCCA-AGCGGGAGCTTCTAGA-TTCGT 727
|||||||| ||||||||||||||| || || ||| | |||||||| | || |||||
Sbjct 647 TGCGATTCAAAAACCTTCCCGAGCTCACCAAGA-CCAGAA-GGGAGCTTTT-GAATTCGT 703
Query 728 GCTACAGGAGTGAACATTTGGTGGAGTCTC-AATCCACTGGTGA-ACTTTTCTTGGTAAA 785
| | || ||| ||||| ||||||||||| || |||| ||| ||||| |||||| ||
Sbjct 704 GTTGCACGAGCGAACACTTGGTGGAGTCAAGAA-CCACAAATGAGACTTT-CTTGGTTAA 761
Query 786 GCGGTACAAGAAGGCCACCACCAGAGATACGGTAAAAATGAAAACACA-AGGTGTAATGG 844
| |||| | ||||| ||||||||| | ||| |||||||||||| | || | ||||||
Sbjct 762 GTGGTATAGGAAGGTCACCACCAGTGGCGTGGTGAAAATGAAAACA-AGAGCTTTAATGG 820
Query 845 TGTTCAAGCTAGACGAAAAAGGAAACGCTGTGTACACTCAAGACATTGGAGATCTTTGCA 904
| ||||||||||||||| |||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 821 TCTTCAAGCTAGACGAAGAAGGGAACGCTGTTTACACTCAAGACATTGGAGATCTCTGCA 880
Query 905 TTTTTCTCTCAAAGTCTGAACCTTTTTGT 933
|||| ||||||||||||||||||||||||
Sbjct 881 TTTTCCTCTCAAAGTCTGAACCTTTTTGT 909
> Ahg495522 jgi|Araly1|495522|fgenesh2_kg.8__1338__AT5G54320.1
Length=1110
Score = 669 bits (362), Expect = 0.0
Identities = 725/893 (81%), Gaps = 54/893 (6%)
Strand=Plus/Plus
Query 74 TTCTCTCT-A--ATGGCTTCTCATCATCCTCGCTGCAAACTCCTCCGTGTTCCATCATCT 130
|||||||| | ||||||| ||||| || | ||||||||||||||| |||| |||| ||
Sbjct 77 TTCTCTCTAATGATGGCTTATCATCTTCTTTGCTGCAAACTCCTCCTTGTTTCATCGTCA 136
Query 131 GCGCCAATCCTTGTGG-AG-C--G-G-GTCTCGGAAAACTCGTGATTTTGAATGCTAATG 184
|||| || | |||||| || | | | ||||||||||||||||||||| || |||
Sbjct 137 GCGCTAAACGTTGTGGAAGACTTGCGAAAGAGGGAAAACTCGTGATTTTGAATCCTTATG 196
Query 185 -AGAGTGATTACACTGATTTGGAAAAGAAGGTGCCGATGGAGTTG--GTA-GATAGTGAT 240
||| ||| | |||| |||||| ||||||||||| |||| |||| ||| |||| |||
Sbjct 197 AAGA-TGACTGCACTTCTTTGGATAAGAAGGTGCCTATGGCGTTGTTGTATGATAATGA- 254
Query 241 CCAATGGTGACGATAGGGGCATCTCATGGCTGGGTAGCTACTTTGA---AGGAGGACGGA 297
| | || || || || |||| ||||||||| |||||||||||| |||| ||||||
Sbjct 255 --ACTTGTAACCATCGGTTCATCCCATGGCTGGATAGCTACTTTGAGTCAGGACGACGGA 312
Query 298 ATATTGCGTCTCCAAGACGATCTAAACCC-TTATGCATCAGATACAAACCCTAAACGCA- 355
|| ||||||||||||||||||||||||| | |||||| ||||||||||| |||||||
Sbjct 313 CTACTGCGTCTCCAAGACGATCTAAACCCGGT-TGCATCGGATACAAACCCGAAACGCAT 371
Query 356 TCTCTCTGCCTCCTCTTGTAACTCTGCCTCGTTGCCAAACTCAAATCGTTACCAATGTGT 415
|| | |||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 372 TC-CCCTGCCTCCTCTTGTAACTCTCCCTCATTGCCAAACTCAAATCGTTACCAATGTGT 430
Query 416 CAATGTCCTTACCTTCTCCTGAGGATGAGGACTGTGTTGTGGCTGTCAAGTTCTTGGGGC 475
|| |||||| | |||||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 431 CATTGTCCTCATCTTCTCCTGAGGATGAAGACTGTGTTGTGGCTGTCAAGTTTTTGGGAC 490
Query 476 CTCAACTCAGCTTTTGCAGACCGGCTAAAAGCAACTCCGAGTGGACCAACATCAAGA-TC 534
|||| ||||||||||||||||||||| |||| ||||||||||||| |||||||| || ||
Sbjct 491 CTCAGCTCAGCTTTTGCAGACCGGCTCAAAGTAACTCCGAGTGGATCAACATCA-GAATC 549
Query 535 GCAAACCCTAGCTTCTTCTCCTCACGTGTCATGTTTTCTAAGAAAGATGAGATGTTTCGT 594
| ||||||| | |||| ||| || |||||||||| || ||||||||| | |||||| |
Sbjct 550 GAAAACCCTTGTTTCTACTCATCTCGTGTCATGTACTCCAAGAAAGATAACATGTTTTGC 609
Query 595 ATTCCTGGGTCTGGAGGCCACCTCATCGGATCATGGGATCTCCGCACAGAGGATCACAAT 654
||||| || |||||||| |||||||| ||| ||||||||||||||||| |||||
Sbjct 610 ATTCCCGGATCTGGAGGACACCTCATTGGAACATGGGATCTCCGCACA------CACAAG 663
Query 655 CCCAAGATT-CAGAGGCTGC-GATTCCGAAACCTTCCCGAGCTGCCTAGGGCCAAGCGGG 712
| || || ||||| ||| | ||| |||||||||| ||||| | | | |||| | |
Sbjct 664 CATAAT-TTGCAGAGTTTGCAGTTTCA-AAACCTTCCCAAGCTGACAAAGACCAAACAGA 721
Query 713 AGCTTCTAGATTCGTGCTACAGGAGTGAACATTTGGTGGAGTCTCAATCCA-CTGGTGAA 771
|||| || ||||| |||| || ||| || || ||||| ||||| | ||| ||||||||
Sbjct 722 AGCTACTGGATTCATGCTGCAAGAGCGAGCACTTGGTTGAGTC--A--CCAGCTGGTGAA 777
Query 772 -CTTTTCTTGGTAAAGCGGTACAAGAAGGCCACCACCAGAGAT-A-C--GG-TAA----- 820
|||| |||||| ||| ||||||||||| | | || |||| | | || ||
Sbjct 778 ACTTT-CTTGGTTAAGTGGTACAAGAAGTCTTCTGGCA-AGATCATCAAGGGTATTGCGC 835
Query 821 AAATGAAAACACAAGGTGTAATGGTGTTCAAGCTAGACGAAAAAGGAAACGCTGTGTACA 880
||||||||||||||| | |||||||||||||||| |||||| |||||||||| || ||||
Sbjct 836 AAATGAAAACACAAGCTTTAATGGTGTTCAAGCTTGACGAACAAGGAAACGCGGTTTACA 895
Query 881 CTCAAGACATTGGAGATCTTTGCATTTTTCTCTCAAAGTCTGAACCTTTTTGT 933
||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 896 CTCAAGACATTGGAGATCTCTGCATTTTCCTCTCAAAGTCTGAACCTTTTTGT 948
> Ahg493544 jgi|Araly1|493544|fgenesh2_kg.7__2977__AT4G13680.1
Length=1242
Score = 431 bits (233), Expect = 6e-120
Identities = 569/721 (79%), Gaps = 63/721 (9%)
Strand=Plus/Plus
Query 243 AATGGTG-ACGATAGGGGCATCTC-ATGGCTGGGTAGCTACTTTGAAGGAGGACGGAATA 300
||||| | |||||||| |||| | |||| ||| ||||||||||| | ||||||| |
Sbjct 271 AATGG-GAACGATAGGATCATC-CAATGGATGGCTAGCTACTTTG-A--AGGACGGCGTG 325
Query 301 TTGCGTCTCC-A-AGACG-ATCTAAACCCTTATGCATCAGATACAAACCCTAAACGCATC 357
|||||||||| | | | | ||||||| | |||| | | || | || ||||||||
Sbjct 326 TTGCGTCTCCGAGAAATGAATCTAAA--C-TATG----A-A-ACGGATCCGAAACGCAT- 375
Query 358 TCT-CTGCCTCCTCTTGTAACTCTGCCTCGTTGCCAAACTCAA-ATCGTTACCAATGTGT 415
| | ||||||||||||||||||||||||| ||||||||| ||| || || ||||| |||
Sbjct 376 TTTGCTGCCTCCTCTTGTAACTCTGCCTCATTGCCAAACACAATAT-GTCACCAACGTGG 434
Query 416 CAATGTCCTTAC--CTTCTCCTGAGGATGAGGACTGTGTTGTGGCTGTCAAGTTCTTGGG 473
| |||| | ||| |||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 435 CCATGT-C-TACGTCTTCCCCTGAAGAAGAGGACTGTGTTGTGGCTGTCAAGTTCTTGGG 492
Query 474 GCCTCAACTCAGCTTTTGCAGACCGGCTAAAAGCAACTCCGAGTGGACCAACATCAAG-A 532
||||||||||||||||||||||| ||| |||||||||||||||||| |||| || || |
Sbjct 493 ACCTCAACTCAGCTTTTGCAGACCCGCTCAAAGCAACTCCGAGTGGATCAACTTC-AGAA 551
Query 533 TCG-CA-AACCCTAGCTTCTTCTCCTCACGTGTCATGTTTTCTAAGAAAGATGAGATGTT 590
| | || | |||| ||||||||||||| | |||||||||||| ||||||||||| |||||
Sbjct 552 T-GACAGACCCCT-GCTTCTTCTCCTCCCCTGTCATGTTTTCCAAGAAAGATGACATGTT 609
Query 591 TCGTAT-TCCTGGGTCTGGAGGCCACCTCATCGGATCATGGGATCTCCGCA-C-AGAGGA 647
||| || || || |||||||||||||||||||||||||||||||||| | | | || |
Sbjct 610 TCGCATAGCC-GGCTCTGGAGGCCACCTCATCGGATCATGGGATCTCCAAAACCATAGCA 668
Query 648 TCACAATCCCAAGATT-CAGAGGCT-GCGATTCCGAAACCTTCCCGAGCTGCCTAGGGCC 705
|||| |||||| || |||| || ||| || | |||||||||| ||||| || | | |
Sbjct 669 --ACAACCCCAAG-TTGCAGAT-CTTGCGGTTTCAAAACCTTCCCAAGCTGTCT-GAGAC 723
Query 706 AAG-CGGGAGCTTCTAGATTCGTGCTACAGGAGTGAACATTTGGTGGAGTC--TCAATCC 762
|| || || ||||| ||||||||||||| || ||||| ||||||||||| | || ||
Sbjct 724 AAAACGAGACCTTCTGGATTCGTGCTACACAAGCGAACACTTGGTGGAGTCAAT-AA-CC 781
Query 763 ACTGGTGAA-CTTTTC-TTGGTAAAGCGGTACAAGAAGGC--CACC-A-C--CAGAGATA 814
|| ||||| |||| | ||| ||| | ||||| |||| | || | | || || ||
Sbjct 782 ACCAGTGAAACTTT-CATTGTTAA-GTTGTACAGGAAGACAGCAGAGATCGTCAAAGGTA 839
Query 815 --CGGTAAAAATGAAAACACAAGGTGTAATGGTGTTCAAGCTAGACGAAAAAGGAAACGC 872
| || || |||||||| ||| |||||||||||| |||||| ||| ||||||||||
Sbjct 840 TTCC-TAGAA-TGAAAACAGAAGCAATAATGGTGTTCAGGCTAGATGAAGAAGGAAACGC 897
Query 873 TGTGTACACTCAAGACATTGGAGATCTTTGCATTTTTCTCTCAAAGTCTGAACCTTTTTG 932
||| |||||||||||||| ||||||| ||||| ||| |||| |||||| |||| ||
Sbjct 898 TGTTTACACTCAAGACATCGGAGATCAAAGCATTCACCTCACAAATTCTGAAGCTTTCTG 957
Query 933 T 933
|
Sbjct 958 T 958
> Ahg497341 jgi|Araly1|497341|fgenesh2_kg.236__1__AT5G55880.1
Length=1071
Score = 403 bits (218), Expect = 1e-111
Identities = 412/506 (81%), Gaps = 12/506 (2%)
Strand=Plus/Plus
Query 439 GATGAGGACTGTGTTGTGGCTGTCAAGTTCTTGGGGCCTCAACTCAGCTTTTGCAGACCG 498
|||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 412 GATGAGAACTGTGTTGTGGCTGTCAAGTTCTTGGGACCTCAAATCAGCTTTTGCAGACCC 471
Query 499 GCTAAAAGCAACTCCGAGTGGACCAACATCAAGA-TCGCAAACCCTAGCTTCTTCTCCTC 557
||| || | ||||| ||||||| ||| ||| || ||||||||||| | |||| ||||||
Sbjct 472 GCTCAACGTAACTCTGAGTGGATCAATGTCA-GAATCGCAAACCCTTGTTTCTACTCCTC 530
Query 558 ACGTGTCATGTTTTCTAAGAAAGATGAGATGTTTCGTATTCCTGGGTCTGGAGGCCACCT 617
|||||||||||||| ||||| |||| |||||| | || || || ||||||||||| ||
Sbjct 531 TCGTGTCATGTTTTCGGAGAAACATGACATGTTTTGCATCCCCGGATCTGGAGGCCATCT 590
Query 618 CATCGGATCATGGGATCTCCGCACAGAGGATCACAA---TCCCAAGATTCAGAGGCTGCG 674
||| | ||||||||| |||| |||||| | ||||| ||||||| |||||||| || |
Sbjct 591 CATTGCATCATGGGACCTCCACACAGACAAGCACAAAAATCCCAAGTTTCAGAGGTTGAG 650
Query 675 ATTCCGAAACCTTCCCGAGCTGCCTAGGGCCAAGCGGGAGCTTCTAGATTCGTGCTACAG 734
|||| |||| |||| ||||| | | | |||| || ||| || | |||||||||||||
Sbjct 651 GTTCCAAAACATTCCAAAGCTGACAAAGACCAAACGAGAGATTATGGATTCGTGCTACAA 710
Query 735 GAGTGAACATTTGGTGGAGTCTC-AATCCACTGGTGAA-CTTTTCTTGGTAAAGCGGTAC 792
|| ||||| ||||||||||| || |||| |||||| |||| |||||| ||| |||||
Sbjct 711 AAGCGAACACTTGGTGGAGTCAAGAA-CCACCGGTGAAACTTT-CTTGGTTAAGTGGTAC 768
Query 793 AAGAAGGCCACCACCAGAGATACGGTAAAAAT-GAAAACACAAGGTGTAATGGTGTTCAA 851
| ||||||| | |||| || | | |||| || ||| ||| | ||||||||||||
Sbjct 769 AGGAAGGCCGTCTGGAGAGGTATG-TCGAAATTGAGCACAAAAGCTTTAATGGTGTTCAG 827
Query 852 GCTAGACGAAAAAGGAAACGCTGTGTACACTCAAGACATTGGAGATCTTTGCATTTTTCT 911
||| ||||| ||||||| |||||||||||| |||||||||||||||| |||||||| ||
Sbjct 828 GCTGGACGACGAAGGAAATGCTGTGTACACTAAAGACATTGGAGATCTCTGCATTTTCCT 887
Query 912 CTCAAAGTCTGAACCTTTTTGT-TCT 936
|||||| ||||||||||||||| |||
Sbjct 888 CTCAAAATCTGAACCTTTTTGTGTCT 913
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43269510795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5