BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54570.1
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495536 jgi|Araly1|495536|fgenesh2_kg.8__1352__AT5G54570.1 2521 0.0
Ahg950099 jgi|Araly1|950099|scaffold_801986.1 686 0.0
Ahg950105 jgi|Araly1|950105|scaffold_801992.1 124 2e-27
> Ahg495536 jgi|Araly1|495536|fgenesh2_kg.8__1352__AT5G54570.1
Length=1590
Score = 2521 bits (1365), Expect = 0.0
Identities = 1531/1609 (95%), Gaps = 20/1609 (1%)
Strand=Plus/Plus
Query 1 ATGGAATCTTTAATGAGACTCGTCTTAGTTCTGTTTCCGTTCTTCGTCGTCTTCTTCGTA 60
|||||||||||||||||||| ||| | |||||| |||||||||| ||||||| ||||||
Sbjct 1 ATGGAATCTTTAATGAGACTAGTCCTGGTTCTGCTTCCGTTCTTGGTCGTCTCCTTCGTG 60
Query 61 CCTCTTGATCACGTTTCTTCAGAATCTATCAGCAGAGCAAATTTTCCAGATGGATTTGTA 120
||||||||||| ||||| ||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 61 CCTCTTGATCATGTTTCGTCAGAATCTATCAGCAGAGCAGATTTTCCAGATGGGTTTGTA 120
Query 121 TTCGGAACAGCTTCTTCAGCTTACCAGTTCGAAGGAGCTGTGAAAGAAGGAAACAAAGGA 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCGGAACAGCCTCTTCAGCTTACCAGTTCGAAGGAGCTGTGAAAGAAGGAAACAAAGGA 180
Query 181 GAAAGCATATGGGACACTTTCACGAAGGAGAAACCAGGAAAGATACTGGATTTCAGCAAT 240
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 181 CAAAGCATATGGGACACTTTCACG-A--AGAAACCAGGAAAGATACTGGATTTCAGCAAT 237
Query 241 GCGGATACTACGGTTGATCAATATCATAGGTTTCACAATGACATAGACCTGATGAAAGAT 300
|||||||||||||| ||||||||||| |||||||| | ||||||||||||||||||||||
Sbjct 238 GCGGATACTACGGTCGATCAATATCACAGGTTTCATAGTGACATAGACCTGATGAAAGAT 297
Query 301 CTGAGAATGGATGCTTACAGATTCTCTATATCTTGGTCAAGAATATTCCCTAATGGAACA 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CTGAGAATGGATGCTTATAGATTCTCTATATCTTGGTCAAGAATATTCCCTAATGGAACA 357
Query 361 GGGGAAGTAAACCCAGATGGAGTTAAGTACTATAACAGCCTAATAGATGCTCTTTTAGCC 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GGGGAAGTGAACCCAGATGGAGTTAAGTACTATAACAGCCTAATAGATGCTCTTTTAGCC 417
Query 421 AAAGGAATCAAACCTTATGTGACATTGTATCACTGGGATCTCCCACAAGCCTTAGAAGAC 480
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 418 AAAGGAATCAAACCTTACGTGACATTGTATCACTGGGATCTCCCACAAGCTTTAGAAGAC 477
Query 481 AGATATGAAGGATGGCTAAGCAGAGAAGTGGTGGATGATTTTGAGCATTATGCATTCACC 540
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 478 AGATATGAAGGATGGCTAAGCAGAGAAGTCGTGGAAGATTTTGAGCATTATGCATTCACC 537
Query 541 TGTTTCAAAGCATTTGGAGATAGAGTGAAGTACTGGATCACTTTCAATGAGCCTCATGGG 600
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 538 TGTTTCAAAGCATTTGGAGATAGAGTGAAGTACTGGATCACTATCAATGAGCCTCATGGG 597
Query 601 GTATCGATCCAAGGCTATGACACAGGGATACAAGCTCCAGGAAGGTGCTCACTTCTGGGA 660
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 598 GTATCGATCCAAGGCTATGACACAGGGATACAAGCTCCAGGGAGGTGCTCACTTCTAGGA 657
Query 661 CATTGGTTCTGTAAGAAGGGGAAGTCATCGGTCGAACCGTATATTGTAGCTCATAACATT 720
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 658 CATTGGTTCTGTAAGGAGGGGAAGTCATCGGTCGAACCGTATGTTGTAGCTCATAACATT 717
Query 721 CTGTTGTCTCATGCTGCTGCTTACCATACCTACCAAAGAAACTTTAAGGAGAAACAACGT 780
|| ||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 718 CTCTTGTCTCATGCTGCTGCTTACCACACCTACCAGAGAAACTTCAAGGAGAAACAACGT 777
Query 781 GGTCAAATCGGGATATCATTAGATGCAAAATGGTATGAGCCAATGTCTGATTGTGATGAG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GGTCAAATCGGGATATCATTAGATGCAAAATGGTATGAGCCAATGTCTGATTGTGATGAG 837
Query 841 GACAAAGATGCAGCTCGTAGAGCAATGGATTTTGGGCTTGGATGGTTTATGGATCCTCTA 900
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 838 GACAAAGATGCAGCTCGTAGAGCAATGGATTTTGGGATTGGATGGTTTATGGATCCTCTA 897
Query 901 ATCAATGGAGACTATCCAGCTTCAATGAAGAGTCTAGTGGAAGAGAGACTACCTAAGATA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 ATCAATGGAGACTATCCAGCTTCAATGAAGAGTCTAGTGGAAGAGAGACTACCTAAGATA 957
Query 961 ACACCAGAGATGTATAAAACCATAAAAGGGGCATTTGATTACGTGGGAATCAACCACTAC 1020
||||||||||||| | || | |||||||||||||||||||||||||||||||||||||||
Sbjct 958 ACACCAGAGATGTCTCAATCTATAAAAGGGGCATTTGATTACGTGGGAATCAACCACTAC 1017
Query 1021 ACCACATTATACGCGAGGAATGACAGAACTAGGATAAGGAAACTGATTCTACAAGATGCT 1080
||| |||||||||| |||||||||||||||||||||||||||||||| || || ||||||
Sbjct 1018 ACCGCATTATACGCAAGGAATGACAGAACTAGGATAAGGAAACTGATACTGCAGGATGCT 1077
Query 1081 TCTTCTGATTCAGCCGTGATTACAAGCTCTTTTCGTGGAGGAGTAGCTATAGGAGAAAGA 1140
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1078 TCTTCTGATTCAGCGGTTATTACAAGCTCTTTTCGTGGAGGAGTAGCTATAGGAGAAAAA 1137
Query 1141 GCAGGGTCAAGCTGGCTACACATTGTCCCATGGGGAATCAGGAAACTGGCAGTGTATGTT 1200
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1138 GCAGGATCAAGCTGGCTACACATTGTCCCATGGGGAATCAGGAAACTGGCAGTGTATCTT 1197
Query 1201 AAAGACATATATGGAAACCCACCTGTATTCATCACAGAAAACGGCATGGATGAGAAAAAC 1260
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 AAAGACATGTATGGAAACCCACCTGTATTCATCACAGAAAACGGCATGGATGAGAAAAAC 1257
Query 1261 A-GTCCATTCATAGACATGGAAAAAGCATTAAAAGATGACAAGAGGATTGGCTTCCACAG 1319
| | ||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||
Sbjct 1258 AAG-CCATTCATAGACATGGAGAAAGCATTAAAAGATAACAAGAGGATTAGCTTCCACAG 1316
Query 1320 AGATTACCTCTCAAACTTATCAGCTGCCATAAGGAATGATGAATGCGACGTAAGAGGATA 1379
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1317 AGATTACCTCTCAAACTTATCAGCTGCCATAAGGAATGATGAATGCGATGTAAGAGGATA 1376
Query 1380 TTTTGTGTGGTCATTGCTAGACAATTGGGAATGGAACTCAGGATACACGGTCCGGTTTGG 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1377 TTTTGTGTGGTCATTGCTAGACAATTGGGAATGGAACTCAGGATACACGGTCCGGTTCGG 1436
Query 1440 GATCTACTATGTTGACTACAAGAACAATCTCACAAGGATACCTAAAGCTTCTGCTCGATG 1499
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1437 GATCTACTACGTTGACTACAAGAACAATCTCACAAGGATACCTAAAGCCTCTGCTCGATG 1496
Query 1500 GTTTCAAACAATACTTAGCGGCTCTTCTTCAACATCAGATTCCAGCAAGCTTATTCTACT 1559
|||||||| |||||||||||||||| ||||| ||||||||||||||||| | | |
Sbjct 1497 GTTTCAAAGAATACTTAGCGGCTCTACTTCA---TCAGATTCCAGCAAGCT-A--C-A-- 1547
Query 1560 GGAAGAGGCAACAGAACAACAACAAGAGTACAAATTCCAAGAGAAATGA 1608
||| | | ||||||||||| || | ||||||||||| ||||||||||||
Sbjct 1548 GGA-G-G-CAACAGAACAA-AA-A-GAGTACAAATTTCAAGAGAAATGA 1590
> Ahg950099 jgi|Araly1|950099|scaffold_801986.1
Length=821
Score = 686 bits (371), Expect = 0.0
Identities = 401/416 (96%), Gaps = 0/416 (0%)
Strand=Plus/Plus
Query 353 ATGGAACAGGGGAAGTAAACCCAGATGGAGTTAAGTACTATAACAGCCTAATAGATGCTC 412
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 ATGGAACAGGGGAAGTGAACCCAGATGGAGTTAAGTACTATAACAGCCTAATAGATGCTC 295
Query 413 TTTTAGCCAAAGGAATCAAACCTTATGTGACATTGTATCACTGGGATCTCCCACAAGCCT 472
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 296 TTTTAGCCAAACGAATCAAACCTTACGTGACATTGTATCACTGGGATCTCCCACAAGCTT 355
Query 473 TAGAAGACAGATATGAAGGATGGCTAAGCAGAGAAGTGGTGGATGATTTTGAGCATTATG 532
||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||
Sbjct 356 TAGAAGACAGATATGAAGGATGGCTAAGCAGAGAAGTCGTGGATGATTTCGAGCGTTATG 415
Query 533 CATTCACCTGTTTCAAAGCATTTGGAGATAGAGTGAAGTACTGGATCACTTTCAATGAGC 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 CATTCACCTGTTTCAAAGCATTTGGAGATAGAGTGAAGTACTGGATCACTTTCAATGAGC 475
Query 593 CTCATGGGGTATCGATCCAAGGCTATGACACAGGGATACAAGCTCCAGGAAGGTGCTCAC 652
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 476 CTCATGGGGTATCGATCCAAGGCTATGACACAGGGATACAAGCTCCAGGGAGGTGCTCAC 535
Query 653 TTCTGGGACATTGGTTCTGTAAGAAGGGGAAGTCATCGGTCGAACCGTATATTGTAGCTC 712
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 536 TTCTGGGACATTGGTTCTGTAAGGAGGGGAAGTCATCGGTCGAACCGTATGTTGTAGCTC 595
Query 713 ATAACATTCTGTTGTCTCATGCTGCTGCTTACCATACCTACCAAAGAAACTTTAAG 768
|||||||||| |||||||||||||| |||||||| |||||||| |||||||| |||
Sbjct 596 ATAACATTCTCTTGTCTCATGCTGCAGCTTACCACACCTACCAGAGAAACTTCAAG 651
Score = 246 bits (133), Expect = 3e-64
Identities = 185/209 (89%), Gaps = 7/209 (3%)
Strand=Plus/Plus
Query 1 ATGGAATCTTTAATGAGACTCGTCTTAGTTCTGTTTCCGTTCTTCGTCGTCTTCTTCGTA 60
|||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||
Sbjct 25 ATGGAATCTTTAATGAGACTCGTCTTAGTTCTGTTTCCATTCTTGGTCGTCTCCTTCGTC 84
Query 61 CCTCTTGATCACGTTTCTTCAGAATCTATCAGCAGAGCAAATTTTCCAGATGGATTTGTA 120
||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 85 CCTCTTGATCATGTTTCTTCAGAATCTATCAGCAGAGCAGATTTTCCAGATGGGTTTGTA 144
Query 121 TTCGGAACAGCTTCTTCAGCTTACCAGTTCGAAGGAGCTGTGAAAGAAG--GAAACAAAG 178
|||||||||||||| ||||| |||||| | | || | ||| || | | | |||||
Sbjct 145 TTCGGAACAGCTTCGTCAGCATACCAGAAC-ATC-AGTTC-GAAGGA-GCTGTA-CAAAG 199
Query 179 GAGAAAGCATATGGGACACTTTCACGAAG 207
|||||||||||||||||||||||||||||
Sbjct 200 GAGAAAGCATATGGGACACTTTCACGAAG 228
Score = 196 bits (106), Expect = 3e-49
Identities = 116/121 (96%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 766 AAGGAGAAACAACGTGGTCAAATCGGGATATCATTAGATGCAAAATGGTATGAGCCAATG 825
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 679 AAGGAGAAACAACGTGGTCAGATCGGGATATCATTAAATGCAAAATGGTATGAGCCAATG 738
Query 826 TCTGATTGTGATGAGGACAAAGATGCAGCTCGTAGAGCAATGGATTTTGGGCTTGGATGG 885
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||
Sbjct 739 TCTGATTGTGATGAGGACAATGATGCAGCTCGTAGAGCAATGGATTTTGGGATTGGACGG 798
Query 886 T 886
|
Sbjct 799 T 799
> Ahg950105 jgi|Araly1|950105|scaffold_801992.1
Length=317
Score = 124 bits (67), Expect = 2e-27
Identities = 73/76 (96%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 277 AATGACATAGACCTGATGAAAGATCTGAGAATGGATGCTTACAGATTCTCTATATCTTGG 336
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 72 AATGACATAGACCTGCTGAAAGATCTGAGAATGGATGCTTACAGATTCTCGATATCTTGG 131
Query 337 TCAAGAATATTCCCTA 352
|||||||||||| |||
Sbjct 132 TCAAGAATATTCACTA 147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60258767590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5