BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G54580.1

Length=908
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg950107 jgi|Araly1|950107|scaffold_801994.1                        817    0.0  


> Ahg950107 jgi|Araly1|950107|scaffold_801994.1
Length=515

 Score =  817 bits (442),  Expect = 0.0
 Identities = 482/502 (96%), Gaps = 0/502 (0%)
 Strand=Plus/Plus

Query  103  AATCAATTGAATCTATGGCGATGGCTATGAGACTTCCAGCGATATCTAGAGCTGTGACGG  162
            |||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct  11   AATCAATTGAATCTATGGCGATGGCTATGAGACTCCCGGCGATATCTAGAGCGGTGACGG  70

Query  163  AAGTAGCTTCAGCTCCGGTTGGTTTGAGACGACTGTTCTGTTCAAATGCTTCAAGGTTCT  222
            |||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  71   AAGTGGCTTCGGCTCCGGTTGGTTTGAGACGGCTGTTCTGTTCAAATGCTTCAAGGTTCT  130

Query  223  CTTTTTTGTCTCCACAAGCTGAATCCCAAACACCGGCTCGTCCTCAGGCTGAACCTAGCA  282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  131  CTTTTTTGTCTCCACAAGCTGAATCCCAAACACCGGCTCGTCCTCAGGCTGAACCTAGCA  190

Query  283  CCAATCTCTTCGTCTCCGGGCTTAGTAAGCGCACCACTTCTGAAGGACTAAGGACTGCTT  342
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct  191  CCAATCTCTTCGTCTCCGGGCTTAGTAAGCGCACCACTTCTGAAGGACTTAGGACCGCGT  250

Query  343  TTGCTCAGTTTGGAGAAGTTGCTGATGCTAAGGTTGTCACAGACAGAGTATCAGGATATT  402
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  251  TTGCTCAGTTTGGAGAAGTTGCTGATGCTAAGGTTGTCACAGACAGAGTCTCAGGATATT  310

Query  403  CCAAAGGGTTTGGATTTGTTAGATATGCCACTTTAGAAGATTCTGCCAAAGGCATAGCTG  462
            ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct  311  CCAAAGGGTTTGGATTTGTTAGATATGCCACCTTAGAAGATTCTGCAAAAGGCATAGCTG  370

Query  463  GAATGGACGGGAAGTTTCTTGACGGTTGGGTCATATTCGCAGAGTATGCAAGACCGAGAG  522
            ||||||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct  371  GAATGGATGGGAAGTTTCTTGATGGCTGGGTCATATTCGCAGAGTATGCAAGACCAAGAG  430

Query  523  AGCAATCACAGTCATATCAACCTCAGAACAACATGTCTCGTCCTCCATACTATGGTAACC  582
            ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  431  AGCAATCGCAGCCATATCAACCTCAGAACAACATGTCTCGTCCTCCATACTATGGTAACC  490

Query  583  GCTAGAGAAACAGTTTTCTTCG  604
            ||||||||||||| ||| ||||
Sbjct  491  GCTAGAGAAACAGCTTTGTTCG  512



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33662535711


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5