BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54590.2
Length=1323
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495540 jgi|Araly1|495540|fgenesh2_kg.8__1356__AT5G54590.2 2013 0.0
Ahg952043 jgi|Araly1|952043|scaffold_33400001.1 200 2e-50
> Ahg495540 jgi|Araly1|495540|fgenesh2_kg.8__1356__AT5G54590.2
Length=1314
Score = 2013 bits (1090), Expect = 0.0
Identities = 1240/1313 (94%), Gaps = 7/1313 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGGAGAATCCA-AAGGATTAATCGTTGGGATCTCACTAGGTTTGGTGATTGGTGT 59
||||||||||||| || || || || |||||||||||| |||||||||||||||||||
Sbjct 1 ATGGAAGGAGAAT-CATTTGGTTTGATTGTTGGGATCTCATTAGGTTTGGTGATTGGTGT 59
Query 60 TGTC-TTAGCTATCTCAGCTTTGTTCTGCTTTAGGTATCATAGAAAAAAGTCTCAGATTG 118
|| | |||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 60 TG-CTTTAGCTATTTCAGCTTTGTTCTGCTTTAGGTATCATAGAAAAAGGTCTCAGATTG 118
Query 119 TGAATAGTGGATCACGAAGAAGTGCAACCATTCCCATCAGAGAGAATGGAGCTGATTCGT 178
| |||||||| ||| |||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 119 TTAATAGTGGTTCAAGAAGAAGTGCTACCATTCCTATCAGAGAGAATGGAGCTGATTCTT 178
Query 179 GTAATATAATGTCGGATTCGACCATTGGTCCGGATTCACCTGTGAAATCTTCTAAGAATG 238
||||| |||||||||||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct 179 GTAATGTAATGTCGGATTCGACTATTGGTCCGGATTCGCCTGTGAAATCTTCCAAGAATG 238
Query 239 GGAGGTCTGTTTGGCTTGAAGGGTTTAGTAAGAGGAGTAATGTCATCTCTGCTTCTGGCA 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GGAGGTCTGTTTGGCTTGAAGGGTTTAGTAAGAGGAGTAATGTCATCTCTGCTTCTGGCA 298
Query 299 TTTTGGAATATTCTTACAGGGATTTGCAGAAAGCGACGTGTAATTTCACGACTTTGATAG 358
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 299 TTTTGGAATATTCCTACAGGGATTTGCAGAAAGCGACATGTAATTTCACGACTTTGATAG 358
Query 359 GCCAAGGAGCATTTGGACCTGTCTACAAAGCTCAAATGTCTACTGGTGAGATCGTGGCTG 418
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 359 GCCAAGGAGCATTTGGACCTGTCTACAAAGCTCAAATGTCTACTGGTGAGATTGTGGCTG 418
Query 419 TGAAAGTTCTAGCCACTGATTCTAAACAGGGCGAAAAAGAGTTTCAGACAGAGGTTATGT 478
| |||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 419 TTAAAGTTCTTGCCACTGATTCCAAGCAGGGCGAAAAAGAGTTTCAGACAGAGGTTATGT 478
Query 479 TATTGGGAAGGTTGCATCACCGTAACCTAGTGAACTTGATTGGATACTGTGCAGAGAAAG 538
||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct 479 TATTGGGAAGGTTGCATCATCGTAACCTAGTGAACTTGATTGGATATTGCGCAGAGAAAG 538
Query 539 GCCAACACATGCTTATATATGTTTACATGAGTAAAGGAAGCTTAGCTTCTCATTTATACA 598
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 539 GCCAACACATGCTTATATATGTCTACATGAGTAAAGGAAGCTTAGCTTCACATTTATACA 598
Query 599 GCGAAAAACATGAACCGCTGAGCTGGGATTTGAGAGTATATATTGCTTTAGACGTGGCAC 658
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 599 GCGAAAAACATGAACCGTTGAGCTGGGATTTGAGAGTATATATTGCTTTAGATGTGGCAA 658
Query 659 GTGGTCTAGAGTATCTTCATGATGGGGCTGTTCCTCCTGTAATCCACAGAGATATCAAAT 718
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 659 GAGGTCTAGAGTATCTTCATGATGGGGCGGTTCCTCCTGTAATCCACAGAGATATCAAAT 718
Query 719 CTTCCAACATCTTGCTGGATCAATCTATGAGAGCTCGGGTTGCTGACTTTGGCCTCTCCA 778
|||||||||| ||| |||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 719 CTTCCAACATTTTGTTGGACCAATCCATGAGAGCTCGGGTTGCTGACTTTGGCCTCTCCA 778
Query 779 GAGAAGAAATGGTAGACAAACATGCAGCTAACATCAGAGGAACATTTGGCTACCTCGATC 838
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 779 GAGAAGAAATGGTAGATAAACATGCTGCTAACATCAGAGGAACATTTGGCTACCTTGATC 838
Query 839 CCGAATACATTTCAACAAGAACATTCACCAAGAAAAGCGATGTCTATGGCTTCGGAGTTT 898
||||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 839 CCGAATACATTTCCACTAGAACATTCACCAAGAAAAGCGATGTTTATGGCTTCGGGGTTT 898
Query 899 TGCTTTTCGAGCTTATAGCAGGAAGAAATCCTCAACAAGGTCTAATGGAATTGGTTGAGC 958
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TACTTTTCGAGCTTATAGCAGGAAGAAATCCTCAACAAGGTCTAATGGAATTGGTTGAGC 958
Query 959 TGGCGGCTATGAATGCAGAGGAAAAAGTCGGATGGGAAGAGATAGTAGATTCAAGATTAG 1018
||||||| |||||||| ||||||||||| || |||||||||||||| |||||||||||||
Sbjct 959 TGGCGGCGATGAATGCGGAGGAAAAAGTTGGGTGGGAAGAGATAGTGGATTCAAGATTAG 1018
Query 1019 ATGGGAGATATGATTTACAAGAAGTGAATGAAGTAGCAGCTTTTGCTTACAAATGCATCT 1078
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1019 ATGGGAGATTTGATTTACAAGAAGTGAATGAAGTTGCAGCTTTTGCTTACAAATGCATCT 1078
Query 1079 CTCGTGCACCTAGAAAACGTCCTAACATGAGGGACATTGTTCAGGTTTTGACTCGTGTTA 1138
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1079 CTCGTGCACCTAGAAAACGTCCCAACATGAGGGACATTGTTCAGGTTTTGACTCGTGTTA 1138
Query 1139 TTAAAGTGAGACATTGCAGAAAGCGGCAGAAGAATTCTCCGTCGCCGTCTCCACGGCTTC 1198
|||| ||||||||||||||||| || |||||||||||||||||||| ||||| |||| ||
Sbjct 1139 TTAAGGTGAGACATTGCAGAAAACGACAGAAGAATTCTCCGTCGCCTTCTCCGCGGCCTC 1198
Query 1199 CTCCTCCTCCTCCGATAGTGGAGGAGTCAGAAGGTGAGTTAACTGCAAACGGATCATTAC 1258
| | | ||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1199 -TGC-C-TCCTCCGATAGTGGAGGAGTCAGAAGGTGAGCTAACCGCAAACGGATCATTAC 1255
Query 1259 GATCAGAAATTCATCGGAGGGATAATTCCTTGGACAGTAGTATAGCTGAAGAC 1311
||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1256 GATCAGAAACTCATCGGAGGGATAATTCCGTGGACAGTAGTATAGCTGAAGAC 1308
> Ahg952043 jgi|Araly1|952043|scaffold_33400001.1
Length=705
Score = 200 bits (108), Expect = 2e-50
Identities = 149/168 (89%), Gaps = 6/168 (4%)
Strand=Plus/Plus
Query 797 AACATGCAGCTAACATCAGAGGAACATTTGGCTACCTCGATCCCGAATACATTTCAACAA 856
||||||| ||||||||||||||| ||||||| || ||||||||||||||| |||| ||||
Sbjct 501 AACATGCTGCTAACATCAGAGGAGCATTTGGTTATCTCGATCCCGAATACGTTTCCACAA 560
Query 857 GAACAT-TCACCAAGAAAAGCGATGTCTATGGCTTC-GGAGTTTTGCT-TTTCGAGCTTA 913
|||||| | ||||||||||| | ||| ||||||| | || ||||| || ||| |||||||
Sbjct 561 GAACATAT-ACCAAGAAAAGAGTTGTTTATGGCTCCTGG-GTTTTACTCTTT-GAGCTTA 617
Query 914 TAGCAGGAAGAAATCCTCAACAAGGTCTAATGGAATTGGTTGAGCTGG 961
|||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 618 TAGCTGGAAGAAATCCTCAACAAGGTCTAATGGAATTTGTTGAGCTGG 665
Score = 158 bits (85), Expect = 1e-37
Identities = 123/140 (88%), Gaps = 7/140 (5%)
Strand=Plus/Plus
Query 319 GATTTGCAGAAAGCGACGTGTAA-TTTCACGACTTTGATAGGCCAAGGAGCATTTGGACC 377
|||||||| ||||| || ||||| ||| || |||||||| ||||||||||||||||||||
Sbjct 137 GATTTGCAAAAAGCAACTTGTAACTTT-ACTACTTTGATTGGCCAAGGAGCATTTGGACC 195
Query 378 TGTCTACAAAGCTCAAATGTCTACTGGTGAGATCG-TGGCTGTGAAAGTTCTAGCCACTG 436
|||||||||||||||||||||||| |||||| || | |||||||||||||| ||||||
Sbjct 196 TGTCTACAAAGCTCAAATGTCTACCAGTGAGA-CGGTAGCTGTGAAAGTTCTTGCCACTT 254
Query 437 ATTCTAAACAGGGCGAAAAA 456
|||||| |||| |||||||
Sbjct 255 ATTCTA--CAGG-CGAAAAA 271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49483546266
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5