BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54600.1
Length=829
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495542 jgi|Araly1|495542|fgenesh2_kg.8__1358__AT5G54600.1 1153 0.0
> Ahg495542 jgi|Araly1|495542|fgenesh2_kg.8__1358__AT5G54600.1
Length=695
Score = 1153 bits (624), Expect = 0.0
Identities = 671/694 (97%), Gaps = 2/694 (0%)
Strand=Plus/Plus
Query 64 AAAAAATGGCAACCATGTCTGCTCTTCAGAGCTCTTTTACTTCTCTTTCTCTAT-CTCCC 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1 AAAAAATGGCAACCATGTCTGCTCTTCAGAGCTCTTTTACTTCTCTTTCTCTATCCT-CC 59
Query 123 AGCTCTTCCTTCCTCGGCCAGCGTTTAATTTCCCCGATTTCCCTCTCCGTCACTTCTCCG 182
| |||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 60 AACTCTTCTTTCCTCGGCCAGCGTTTAATTTCTCCGATTTCCTTCTCCGTCACTTCTCCG 119
Query 183 GTCAAGCCCGCTGAGAACCCATGTCTTGTTCTTGCAAAGCTCAAGCGTTGGGAACGAAAA 242
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GTCAAGCCCGCCGAGAACCCATGTCTTGTTCTTGCAAAGCTCAAGCGTTGGGAACGAAAA 179
Query 243 GAATGCAAACCAAACAGTCTTCCGATTCTCCACAAAATGCATGTCAAGTTTGGAGATACA 302
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 180 GAATGCAAACCAAACAGCCTTCCGATTCTGCACAAAATGCATGTCAAGTTTGGAGATACG 239
Query 303 GTCAAAGTAATATCTGGACGCGACAAGGGTAAAATCGGAGAGGTTACTAAGATTTTCACT 362
|||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 240 GTCAAAGTTATATCTGGACGCGACAAGGGTAAAATCGGAGAGGTCACTAAGATCTTCACT 299
Query 363 CACAACAGTACCATTGTGATCAAAGATGTGAACCTCAAAACAAAACACATGAAGAGCCGA 422
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 300 CACAACAGTACCATTGTGATCAAAGATGTTAACCTCAAAACAAAACACATGAAGAGCAGA 359
Query 423 GAAGAGGGAGAGCCTGGTCAAATTGTCAAGATAGAAGCACCTATCCACAGCTCAAATGTG 482
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 360 GAAGAGGGAGAACCTGGTCAAATTGTCAAGATAGAAGCACCTATCCACAGCTCAAACGTG 419
Query 483 ATGTTGTATTCAAAAGAAAAAGACGTAGTAAGCCGGGTGGGTCACAAGGTACTTGAAGAT 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 420 ATGTTGTATTCAAAAGAAAAAGACGTAGTAAGCCGGGTGGGTCACAAGGTACTTGCGGAT 479
Query 543 GGACAGAAGGTAAGATATCTGATCAAAACAGGGGAACTCATCGACACCATTGAGAAGTGG 602
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 480 GGACAGAAGGTAAGATATCTGATCAAAACAGGGGAACTTATCGACACCATTGAGAAGTGG 539
Query 603 AAGCTACTTAAGGAGGCTAAGGATAAGGAAACCACCCAAGTTGCAGTTACCTCCGCATCT 662
|||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 540 AAGCAACTTAAGGAGGCTAAGGGTAAAGAAACCACCCAAGTTGCAGTTACCTCCGCATCT 599
Query 663 TAGCGTCTCATTTCTTTCTTCTTCAGTGCACTTTTGATATAATAGACCTATGCATTGGAT 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TAGCGTCTCATTTCTTTCTTCTTCAGTGCACTTTTGATATAATAGACCTATGCATTGGAT 659
Query 723 GGATGTATTGAATCCCTTTTAAGGTAAATTATAA 756
||||||||||||||||||||||||||||||||||
Sbjct 660 GGATGTATTGAATCCCTTTTAAGGTAAATTATAA 693
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30650825268
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5