BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54630.1
Length=1575
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950113 jgi|Araly1|950113|scaffold_802000.1 2193 0.0
Ahg889430 jgi|Araly1|889430|Al_scaffold_0007_1416 595 3e-169
> Ahg950113 jgi|Araly1|950113|scaffold_802000.1
Length=1466
Score = 2193 bits (1187), Expect = 0.0
Identities = 1373/1459 (94%), Gaps = 28/1459 (2%)
Strand=Plus/Plus
Query 44 caacaatggaagattcaagcaaaaaaagcc-----aa-aagaagaagaagaacaaaagca 97
|||||||||||||||||||||||||||||| || ||||||||||||||||||| ||
Sbjct 16 CAACAATGGAAGATTCAAGCAAAAAAAGCCAAAAGAACAAGAAGAAGAAGAACAAAAACA 75
Query 98 agaacaaCATCCCAACTGTTTGGTTCTCACTCAAGAAATCCCTCCACTGTAAATCCGAAC 157
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 76 AGAACAACATCCCAACTGTTTGGTTCTCACTCAAGAAATCTCTCCATTGTAAATCCGAAC 135
Query 158 CATCTGATGTCCACGACCC-AATATCCACCACTAAACAGCAACAACACCTCTCCACAATC 216
|||| |||||||||||||| || |||||| ||| || | |||||||||||||||||||||
Sbjct 136 CATCGGATGTCCACGACCCTAA-ATCCACAACT-AA-A-CAACAACACCTCTCCACAATC 191
Query 217 TCCACCAAGAAAATCTCCGGCATATCATCCGGCGGAGCCGCCGTATGCGGTGGTGGTTTA 276
|| |||||||||||||||||| |||| ||||| || || |||||||||||||||||||||
Sbjct 192 TCTACCAAGAAAATCTCCGGCGTATCCTCCGGTGGCGCAGCCGTATGCGGTGGTGGTTTA 251
Query 277 TCAGGATGTTCAAGATCAATAGCAAATCTCAAAGACGTAATCCATGGAAGCAAAAGACAT 336
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 252 TCAGGATGCTCAAGATCAATAGCAAATCTCAAAGACGTTATCCATGGAAGCAAAAGACAT 311
Query 337 TTCGAGAAACCACCAATAAGTAGTCCTCGTTCTATTGGAAGCAATGAGTTTCTAAATCCT 396
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 312 TTCGAGAAACCACCAATAAGTAGTCCTCGTTCTATTGGAAGCAATGAGTTTCTCAATCCT 371
Query 397 ATAACTCATGAAGTTATTCTTAGTAACTCAACTTGTGAGCTTAAGATCACTGGTGTCGGA 456
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 372 ATAACTCATGAAGTTATCCTTAGTAACTCAACTTGTGAGCTTAAGATCACTGGTGTTGGA 431
Query 457 GACATGGCTTCACCTGTCGGAGCAGCGGATTCCGGC---GGAGGT---GGC---GGTGGA 507
||||||||||||||||||||||| || ||||||||| |||||| ||| || |||
Sbjct 432 GACATGGCTTCACCTGTCGGAGCTGCAGATTCCGGCGGTGGAGGTGGCGGCGGAGGAGGA 491
Query 508 GGAAATGGTCGGTCTACGACTTATGTAGGGATGCTTAGACCAGGAACACCGATGCATTAT 567
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 492 GGAAATGGTCGGTCTACGACTTATGTAGGGATGCTGAGACCAGGAACACCGTTGCATTAT 551
Query 568 CTTAACCATTCAGCTTCTTACAGGAGCCAAACAAGAAAGGGTTCGTTTGCTTTGTCggag 627
||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||
Sbjct 552 CTTAACCATTCAGCTTCTTACCGGAGCCAAACGAGAAAGGGTTCGTTCGCTTTGTCGGAG 611
Query 628 agagatcgaggaggaggaggaggaggagaAGGGTTAGGGTTTCATACAAACAGAAGGGTT 687
||||| | | ||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 612 AGAGA---A--A-GAGGAGGAGGAGGAGAAGGGTTAGGGTTTCACACAAACAGGAGAGTT 665
Query 688 TCATTGGAGATGAACAGAGAATCCACCATTAATGGAGGCAACAATTCCTCTGTTTCTTGT 747
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 666 TCATTGGAGATGAACAGAGAAAACGTCATTAATGGAGGCAACAATTCCTCTGTTTCTTGT 725
Query 748 CATAAATGTGGTGAACAGTTCAATAAGCTTGAAGCTGCTGAAGCTCATCATCTCTCTAAA 807
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 726 CATAAATGTGGTGAACAGTTCAATAAACTTGAAGCTGCTGAAGCTCATCATCTCTCTAAA 785
Query 808 CATGCCGTAACGGAGCTTGTAGAAGGAGATTCATCAAGAAAAATAGTGGAGATAATCTGC 867
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 CACGCCGTAACAGAGCTTGTAGAAGGAGATTCATCAAGAAAAATAGTGGAGATAATCTGC 845
Query 868 AGAACAAGCTGGTTAAAGTCAGAGAACCAATGTGGAAGAATCGATAGAGTTTTAAAAGTA 927
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 AGAACAAGCTGGTTAAAATCAGAGAACCAATGTGGAAGAATCGATAGAGTTTTAAAAGTA 905
Query 928 CACAACATGCAGAAGACATTAGCTAGATTCGAGGAATACAGAGAAACAGTTAAAATCAGA 987
||||||||||| || ||| ||||| | || |||||||||||||| ||||| |||||||||
Sbjct 906 CACAACATGCAAAAAACACTAGCTCGTTTTGAGGAATACAGAGAGACAGTAAAAATCAGA 965
Query 988 GCAAGCAAACTTCAGAAGAAGCATCCAAGATGTCTCGCAGACGGTAACGAGCTACTTAGG 1047
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 GCAAGCAAACTTCAAAAGAAGCATCCAAGATGTCTCGCAGACGGTAACGAGCTACTTAGG 1025
Query 1048 TTCCACGGAACCACCGTGGCTTGTGGTTTAGGTATAAACGGGTCAACAAGTGTTTGCACG 1107
|||||||||||||| || ||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1026 TTCCACGGAACCACAGTTGCTTGTGGTTTAGGTATAAACGGGTCAACGAGTCTTTGCACG 1085
Query 1108 GCGGAGAAATGTTGTGTCTGTCGGATTATACGAAACGGGTTCTCGTCGAAACGGGAGAAG 1167
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1086 GCGGAGAAATGTTGTGTTTGTCGGATTATACGGAACGGGTTCTCGTCGAAACGGGAGAAG 1145
Query 1168 AATAATGGGGTTGGTGTTTTCACGGCGTCTACTAGTGGAAGAGCGTTCGAGTCGATTTTG 1227
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1146 AATAATGGGGTTGGTGTTTTCACGGCGTCGACTAGTGGAAGAGCGTTTGAGTCGATTTTG 1205
Query 1228 GTTAACGGTGGAGATGAGAGTGGAGATGTTGATCGGACGGTGAGGAAAGTGTTGATTGTG 1287
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1206 GTTAATGGTGGAGATGAGAGTGGAGAGGTTGATCGGACGGTGAGGAAAGTGTTGATTGTG 1265
Query 1288 TGTAGGGTTATCGCCGGAAGAGTTCATCGGCCGGTGGAGAATGTGGAGGAGATGAATGGG 1347
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 TGTAGGGTTATTGCCGGAAGAGTTCATCGGCCGGTGGAGAATGTGGAGGAGATGAATGGG 1325
Query 1348 TTGATGAGTGGGTTTGATTCTTTGGCTGGCAAAGTTGGTTTGTATACAAATGTGGAGGAG 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 TTGATGAGTGGGTTTGATTCTTTGGCTGGCAAAGTTGGTTTGTATACAAATGTGGAGGAG 1385
Query 1408 CTTTATTTGCTTAATCCTAAAGCTTTGCTTCCTTGCTTTGTGGTCATTTGCAAGCCCTAA 1467
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1386 CTTTATTTGCTTAATCCTAAAGCTTTGCTTCCTTGCTTTGTGGTTATTTGCAAGCCCTAA 1445
Query 1468 AACAT-TTAGCATGTTGGG 1485
|| | ||||||| |||||
Sbjct 1446 AAAAAATTAGCAT-TTGGG 1463
> Ahg889430 jgi|Araly1|889430|Al_scaffold_0007_1416
Length=1293
Score = 595 bits (322), Expect = 3e-169
Identities = 656/813 (81%), Gaps = 40/813 (5%)
Strand=Plus/Plus
Query 653 gagaAGGGTTAGGGTTTCATACAAA-CAGAAGGGTTTCATTGGAGATGAACAGAGAATCC 711
||||||| ||||||||||| |||| |||||| | | |||| | | ||||| |||
Sbjct 509 GAGAAGGATTAGGGTTTCA-CCAAAGCAGAAGAG----A---GAGA-G-ATAGAGATTCC 558
Query 712 ACCATTAATGGAGGCAACAATTCCTCTGTTTCTTGTCATAAATGTGGTGA-ACAGTTCAA 770
||||||||||| | ||||||||||||||||||| ||||||||||| || | | || |
Sbjct 559 GCCATTAATGGA-G--ACAATTCCTCTGTTTCTTGCCATAAATGTGGCGAGA-AATTTAG 614
Query 771 TAAGCTTGAAGCTGCTGAAGCTCATCATCTCTCTAAACATGCCGTAACGGAGCTTGTAGA 830
|| || |||||||| |||||||| |||||| ||||||| ||||| || ||||| | ||
Sbjct 615 CAAACTCGAAGCTGCAGAAGCTCACCATCTCACTAAACACGCCGTGACTGAGCTCATGGA 674
Query 831 AGGAGATTCATCAAGAAAAATAGTGGAGATAATCTGCAGAACAAGCTGGTTAAAGTCAGA 890
|||||| ||||| || ||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 675 AGGAGACTCATCGAGGAAAATTGTGGAGATAATCTGCAGAACAAGCTGGTTAAAGACAGA 734
Query 891 GAACCAATGTGGAAGAATCGATAGAGTT-TTAAAAGTACACAACATGCAGAAGACATTAG 949
||| ||| | || ||||||||| | | | || ||||| ||||||||||| || || ||||
Sbjct 735 GAATCAAGGAGGGAGAATCGATCG-GATCTTGAAAGTGCACAACATGCAAAAAACCTTAG 793
Query 950 CTAGATTCGAGGAATACAGAGAAACAGTTAAAATCAGAGCAAGCAAACTTCAGAAGAAGC 1009
| |||||||| ||||||||||| ||||| || |||||||||||||| || || ||||| |
Sbjct 794 CAAGATTCGAAGAATACAGAGATACAGTGAAGATCAGAGCAAGCAAGCTACAAAAGAAAC 853
Query 1010 ATCCAAGATGTCTCGCAGACGGTAACGAGCTACTTAGGTTCCACGGAACCACCGTGGCTT 1069
| || |||||| |||| ||||| |||||||| || ||||| ||||| |||||||| || |
Sbjct 854 ACCCGAGATGTATCGCCGACGGAAACGAGCTTCTCAGGTTTCACGGCACCACCGTCGCGT 913
Query 1070 GTGGTTTAGGTATAAACGGGTCAACAAGTGTTTGCACGGCGGAGAAATGTTGTGTCTGTC 1129
| | |||||| ||||||||||| || ||| | || | |||| ||||| || || || |
Sbjct 914 GCGCTTTAGGGATAAACGGGTCGACGAGTCTGTGTTCTTCGGAAAAATGCTGCGTTTGCC 973
Query 1130 GGATTATACGAAACGGGTTCTCGTCGAAACGGGAGAAGAATAATGGGGTTGGTGTTTTCA 1189
||||||||||||||||||||||| |||||||||||| |||||| || |||| ||||| |
Sbjct 974 GGATTATACGAAACGGGTTCTCGGCGAAACGGGAGATGAATAACGGAATTGGGGTTTTTA 1033
Query 1190 CGGCGTCTACTAGTG-GAAGAGCGTTCGAGTCGATTTTGGTTAACGGTGGAGATGAGAGT 1248
| ||||| || |||| || | ||||| ||||| ||| || || ||| || || | |
Sbjct 1034 CTGCGTCGACGAGTGAGAGG-GCGTTTGAGTCAATTGTGATTGACGACGG---TG-G--T 1086
Query 1249 GGAGATGTTGATCGGACGGTGAGGAAAGTGTTGATTGTGTGTAGGGTTATCGCCGGAAGA 1308
|| | || ||||||| ||| || | ||| |||||| |||| |||||||| ||
Sbjct 1087 GGTG--GT-GATCGGA-----AGGC--GT-T-GATAGTGTGTCGGGTAATCGCCGGGAGG 1134
Query 1309 GTTCATCGGCCGGTGGAGAATGTGGAGGAGATGAATGGGTTGAT-GAGTGGGTTTGATTC 1367
||||||||||||||||||||| | |||||||||| |||||| || || ||||||||||||
Sbjct 1135 GTTCATCGGCCGGTGGAGAATTTAGAGGAGATGAGTGGGTT-ATTGAATGGGTTTGATTC 1193
Query 1368 TTTGGCTGGCAAAGTTGGTTTGTATACAAATGTGGAGGAGCTTTATTTGCTTAATCCTAA 1427
||||| || |||||||| ||||| |||||||| ||||||||||||||||| ||| ||
Sbjct 1194 GTTGGCCGGTAAAGTTGGGTTGTACACAAATGTTGAGGAGCTTTATTTGCTAAATTCTCG 1253
Query 1428 AGCTTTGCTTCCTTGCTTTGTGGTCATTTGCAA 1460
||||||||||||||| |||||| | ||||||||
Sbjct 1254 AGCTTTGCTTCCTTGTTTTGTGCTGATTTGCAA 1286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59001789505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5