BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54640.1
Length=669
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950114 jgi|Araly1|950114|scaffold_802001.1 680 0.0
Ahg492075 jgi|Araly1|492075|fgenesh2_kg.7__1508__AT4G27230.1 473 6e-133
Ahg474223 jgi|Araly1|474223|fgenesh2_kg.1__4177__AT1G51060.1 372 2e-102
Ahg930013 jgi|Araly1|930013|scaffold_302470.1 348 4e-95
Ahg947885 jgi|Araly1|947885|scaffold_704114.1 243 2e-63
Ahg337754 jgi|Araly1|337754|fgenesh1_pg.C_scaffold_1004319 237 8e-62
> Ahg950114 jgi|Araly1|950114|scaffold_802001.1
Length=434
Score = 680 bits (368), Expect = 0.0
Identities = 411/432 (95%), Gaps = 2/432 (0%)
Strand=Plus/Plus
Query 47 GGTTGTTGTTGTTG-AAAATGGCTGGTCGTGGAAAAACTCTTGGATCCGGTGGGGCGAAG 105
||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 4 GGTGGTTGTTGTTGAAAAATGGCTGGTCGTGGAAAAACTCTTGGATCCGGTGCGGCGAAG 63
Query 106 AAAGCTACATCTCGGAGTAGCAAAGCCGGTCTTCAATTCCCGGTGGGTCGTATCGCTCGT 165
||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 64 AAAGCCACATCTCGGAGTAGCAAAGCTGGTCTTCAATTTCCGGTGGGTCGTATCGCTCGA 123
Query 166 TTCTTAAAAGCCGGTAAATACGCCGAACGTGTTGGTGCCGGTGCTCCGGTTTATCTCGCC 225
||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 124 TTCTTGAAAGCCGGTAAATACGCCGAACGTGTTGGTGCTGGTGCTCCGGTCTATCTCGCC 183
Query 226 GCCGTTCTCGAATATTTGGCCGCCGAGGTTCTTGAATTAGCTGGAAACGCAGCAAGAGAC 285
|||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 184 GCCGTTCTTGAGTATTTGGCCGCCGAGGTTCTTGAATTAGCTGGGAACGCAGCAAGAGAC 243
Query 286 AACAAGAAGACACGTATTGTTCCTCGTCACATTCAGCTTGCGGTCAGAAACGATGAGGAG 345
||||||||||||||||||||||||||||| |||||||| || || |||||||||||||||
Sbjct 244 AACAAGAAGACACGTATTGTTCCTCGTCATATTCAGCTCGCTGTTAGAAACGATGAGGAG 303
Query 346 CTAAGCAAGCTTCTTGGAGATGTGACGATTGCTAATGGAGGAGTGATGCCTAACATCCAC 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 CTAAGCAAGCTTCTTGGAGATGTGACGATTGCTAATGGAGGAGTGATGCCTAACATCCAC 363
Query 406 AATCTCCTTCTCCCTAAGAAGGCTGGTGCTTCAAAGCCTCAGGAAGATTAGGTCTTTTAA 465
||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||| ||
Sbjct 364 AATCTCCTTCTCCCTAAGAAGTCTGGTCCTTCAAAGCCACAGGAAGATTAGGTCTTT-AA 422
Query 466 CACAATGATATA 477
||||||||||||
Sbjct 423 CACAATGATATA 434
> Ahg492075 jgi|Araly1|492075|fgenesh2_kg.7__1508__AT4G27230.1
Length=601
Score = 473 bits (256), Expect = 6e-133
Identities = 355/402 (88%), Gaps = 9/402 (2%)
Strand=Plus/Plus
Query 62 AAATGGCTGGTCGTGGAAAAAC-TCTTGGATCCGGTGGGGCGAAGAAAG-CTACATCTCG 119
||||||| ||||| || ||||| || ||||| |||| ||||||| ||| |||| |||||
Sbjct 51 AAATGGCGGGTCG-GGGAAAACAACTAGGATCTGGTGCGGCGAAG-AAGTCTACTTCTCG 108
Query 120 GAGTAGCAAAGCCGGTCTTCAATTCCCGGTGGGTCGTATCGCTCG-TTTCTTAAAAGCCG 178
|||||||| || || ||||||||||| ||||||||||||||||| ||| || |||||||
Sbjct 109 TAGTAGCAAGGCTGGGCTTCAATTCCCAGTGGGTCGTATCGCTCGATTT-TTGAAAGCCG 167
Query 179 GTAAATACGCCGAACGTGTTGGTGCCGGTGCTCCGGTTTATCTCGCCGCCGTTCTCGAAT 238
|||| |||||||| |||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 168 GTAAGTACGCCGAGCGTGTTGGTGCCGGAGCTCCGGTCTATCTCGCCGCCGTTCTTGAAT 227
Query 239 ATTTGGCCGCCGAGGTTCTTGAATTAGCTGGAAACGCAGCAAGAGACAACAAGAAGACAC 298
| | ||||||||||||||||| ||||||| |||||||||||||| ||||||||||| |
Sbjct 228 ACCTCGCCGCCGAGGTTCTTGAGCTAGCTGGGAACGCAGCAAGAGATAACAAGAAGACCC 287
Query 299 GTATTGTTCCTCGTCACATTCAGCTTGCGGTCAGAAACGATGAGGAGCTAAGCAAGCTTC 358
|||| |||||||| |||||||||||||| || || ||||||||||| ||||||||||| |
Sbjct 288 GTATAGTTCCTCGACACATTCAGCTTGCTGTGAGGAACGATGAGGAACTAAGCAAGCTAC 347
Query 359 TTGGAGATGTGACGATTGCTAATGGAGGAGTGATGCCTAACATCCACAATCTCCTTCTCC 418
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 TTGGAGATGTGACAATTGCTAATGGAGGAGTGATGCCTAACATCCACAATCTCCTTCTCC 407
Query 419 CTAAGAAGGCTGGTGCTTCAAAGCCT-C--AGGAAGATTAGG 457
|||||||| ||||| | || |||||| | ||||||||||||
Sbjct 408 CTAAGAAGTCTGGTCCCTCCAAGCCTACTGAGGAAGATTAGG 449
> Ahg474223 jgi|Araly1|474223|fgenesh2_kg.1__4177__AT1G51060.1
Length=581
Score = 372 bits (201), Expect = 2e-102
Identities = 328/388 (85%), Gaps = 14/388 (4%)
Strand=Plus/Plus
Query 63 AATGGCTGGTCGTGGAAAAACTCTTGGATCCGG-TGGGGCGAAGAAAGCTACATCTCGGA 121
|||||| |||||||| |||||||| ||||| || | |||||||| || ||| | | |
Sbjct 62 AATGGCGGGTCGTGGCAAAACTCTCGGATCTGGAT-CTGCGAAGAAGGCAACAACAAGAA 120
Query 122 GTAGCAAAGCCGGTCTTCAATTCCCGGTGGGTCGTATCGCTCGTTTCTT-AA-AAGCCGG 179
| ||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 121 GCAGCAAAGCCGGTCTTCAATTCCCGGTGGGTCGTATCGCTCGTTTCTTGAAGAAA--GG 178
Query 180 TAAATACGCCGAACGTGTTGGTGCCGGTGCTCCGGTTTATCTC-GCCGCCGTTCTCGAAT 238
|||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct 179 CAAATACGCCGAACGTGTTGGTGCCGGAGCTCCGGTTTA-CTTAGCCGCCGTTCTCGAAT 237
Query 239 ATTTGGCCGCCGAGGTTCTTG-AATTAGCTGGAAACGCAGCAAGAGACAACAAGAAGACA 297
| | |||||||||||| ||| |||| |||||||||||||| ||||| ||||||||||||
Sbjct 238 ACCTCGCCGCCGAGGTT-TTGGAATTGGCTGGAAACGCAGCGAGAGATAACAAGAAGACA 296
Query 298 CGTATTGTTCCTCGTCACATTCAGCTTG-CGGTCAGAAACGATGAGGAGCTAAGCAAGCT 356
| |||||||| | || ||||| ||| |||| || |||||||| || | ||||| |
Sbjct 297 AGGATTGTTCCGAGGCATATTCAA-TTGGCGGTGAGGAACGATGAAGAATTGAGCAAA-T 354
Query 357 T-CTTGGAGATGTGACGATTGCTAATGGAGGAGTGATGCCTAACATCCACAATCTCCTTC 415
| ||||| |||||||| ||||||||||| || |||||||||||||| |||||||| ||||
Sbjct 355 TGCTTGGTGATGTGACTATTGCTAATGGTGGTGTGATGCCTAACATTCACAATCTTCTTC 414
Query 416 TCCCTAAGAAGGCTGGTGCTTCAAAGCC 443
| ||||||||| |||||||||| |||||
Sbjct 415 TTCCTAAGAAGACTGGTGCTTCCAAGCC 442
> Ahg930013 jgi|Araly1|930013|scaffold_302470.1
Length=441
Score = 348 bits (188), Expect = 4e-95
Identities = 327/392 (83%), Gaps = 18/392 (5%)
Strand=Plus/Plus
Query 62 AAATGGCTGGTCGTGGAAAAACTCTTGGATCCGGTGGGGCGAAGAAAG-CTACATCTCGG 120
||||||||||||||||||||||||| ||||| || | || ||| ||| | ||||| |
Sbjct 20 AAATGGCTGGTCGTGGAAAAACTCTCGGATCTGGCGTTGCTAAG-AAGTCAACATCGAGA 78
Query 121 AGTAGCAAAGCCGGTCTTCAATTCCCGGTGGGTCGTATCGCTCG-TTTCTTAA-AAGCCG 178
|| |||||||||||||| |||||||| || ||||| |||||||| ||||| || || ||
Sbjct 79 AGCAGCAAAGCCGGTCTCCAATTCCCCGTTGGTCGAATCGCTCGTTTTCTGAAGAA--CG 136
Query 179 GTAAATACGCCGA-ACGTGTTGGTGCCGGTGCTCCGGTTTATC-TCGCCGCCGTTCTCGA 236
| || |||| | | ||||||||||||||| |||||||| || | | ||||| ||||||||
Sbjct 137 GCAAGTACG-CAACACGTGTTGGTGCCGGAGCTCCGGTCTA-CTTAGCCGCTGTTCTCGA 194
Query 237 ATATTTGGCCGCCGAGGTTCTTGAATTAGCTGGAAACGCAGCAAGAGACAACAAGAAGAC 296
||| | ||||| ||||| || || || |||||||||||||| || || |||||||||||
Sbjct 195 ATACCTCGCCGCTGAGGTACTGGAGTTGGCTGGAAACGCAGCGAGGGATAACAAGAAGAC 254
Query 297 -ACGTATTGTTCCTCGTCACATTCAGCTTGCGGTCAGAAACGATGAGGAGCTAAGCAAGC 355
| | ||||| || |||||||||||||| ||||| || || ||||||||||| || |||
Sbjct 255 TA-GGATTGTGCCACGTCACATTCAGCTCGCGGTGAGGAATGATGAGGAGCTGAGTAAG- 312
Query 356 TT-CTTGGAGATGTGACGATTGCTAATGGAGGAGTGATGCCTAACATCCACAATCTCCTT 414
|| ||||||||||||||||||||||||||||| |||||||||||||| |||| ||| |||
Sbjct 313 TTGCTTGGAGATGTGACGATTGCTAATGGAGGTGTGATGCCTAACATTCACAGTCTTCTT 372
Query 415 CT-CCCTAAGAAGGCTGGTGCTTC-AAAGCCT 444
|| ||| ||||||||||||||||| ||| |||
Sbjct 373 CTTCCC-AAGAAGGCTGGTGCTTCCAAA-CCT 402
> Ahg947885 jgi|Araly1|947885|scaffold_704114.1
Length=469
Score = 243 bits (131), Expect = 2e-63
Identities = 232/280 (83%), Gaps = 10/280 (4%)
Strand=Plus/Plus
Query 127 AAAGCCGGTCTTCA-ATTCCCGGTGGGTCGTATCGCTCG-TTTCTTAAAAGCCGGTAAAT 184
||||| |||||||| ||||| || || | |||||| | || ||| |||||||| ||||
Sbjct 102 AAAGCTGGTCTTCAGTTTCCC-GTTGGAAGAATCGCTAGATTCCTT-AAAGCCGGAAAAT 159
Query 185 ACGCCGAACGTGTTGGTGCCGGTGCTCCGGTTTATCTCGCCGCCGTTCTCGAATATTTGG 244
|||| ||||||||||||||||||||||||||||||||| |||||||||| || || | |
Sbjct 160 ACGCTGAACGTGTTGGTGCCGGTGCTCCGGTTTATCTCTCCGCCGTTCTTGAGTACCTCG 219
Query 245 CCGCCGAGGTTCTTGAA--TTAGCTGGAAACGCAGCAAGAGACAACAAGAAGACACGTAT 302
|||| ||| | ||| | || |||||||| || |||||||| |||||||||||||||||
Sbjct 220 CCGCTGAGCTA-TTGGAGCTT-GCTGGAAATGCGGCAAGAGATAACAAGAAGACACGTAT 277
Query 303 TGTTCCTCGTCACATTCAGCTTGCGGTCAGAAACGATGAGGAGCTAAGCAAGCTTCTTGG 362
|| || || |||||||||||||| || ||||||||||| ||||| || || ||||||||
Sbjct 278 CGTACCACGACACATTCAGCTTGCAGTGAGAAACGATGAAGAGCTTAGTAAACTTCTTGG 337
Query 363 A-GATGTGACGATTGCTAATGGAGGAGTGATGCCTAACAT 401
| | ||| || || |||||||||||||| ||||||||||
Sbjct 338 AAG-TGTAACAATCGCTAATGGAGGAGTTTTGCCTAACAT 376
> Ahg337754 jgi|Araly1|337754|fgenesh1_pg.C_scaffold_1004319
Length=630
Score = 237 bits (128), Expect = 8e-62
Identities = 229/277 (83%), Gaps = 10/277 (4%)
Strand=Plus/Plus
Query 127 AAAGCCGGTCTTCA-ATTCCCGGTGGGTCGTATCGCTCG-TTTCTTAAAAGCCGGTAAAT 184
||||| |||||||| ||||| || || | |||||| | || ||| |||||||| ||||
Sbjct 82 AAAGCTGGTCTTCAGTTTCCC-GTTGGAAGAATCGCTAGATTCCTT-AAAGCCGGAAAAT 139
Query 185 ACGCCGAACGTGTTGGTGCCGGTGCTCCGGTTTATCTCGCCGCCGTTCTCGAATATTTGG 244
|||| ||||||||||||||||||||||||||||||||| |||||||||| || || | |
Sbjct 140 ACGCTGAACGTGTTGGTGCCGGTGCTCCGGTTTATCTCTCCGCCGTTCTTGAGTACCTCG 199
Query 245 CCGCCGAGGTTCTTGAA--TTAGCTGGAAACGCAGCAAGAGACAACAAGAAGACACGTAT 302
|||| ||| | ||| | || |||||||| || |||||||| |||||||||||||||||
Sbjct 200 CCGCTGAGCTA-TTGGAGCTT-GCTGGAAATGCGGCAAGAGATAACAAGAAGACACGTAT 257
Query 303 TGTTCCTCGTCACATTCAGCTTGCGGTCAGAAACGATGAGGAGCTAAGCAAGCTTCTTGG 362
|| || || |||||||||||||| || ||||||||||| ||||| || || ||||||||
Sbjct 258 CGTACCACGACACATTCAGCTTGCAGTGAGAAACGATGAAGAGCTTAGTAAACTTCTTGG 317
Query 363 A-GATGTGACGATTGCTAATGGAGGAGTGATGCCTAA 398
| | ||| || || |||||||||||||| |||||||
Sbjct 318 AAG-TGTAACAATCGCTAATGGAGGAGTTTTGCCTAA 353
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24551158548
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5