BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G54650.1 Length=3391 Score E Sequences producing significant alignments: (Bits) Value Ahg495546 jgi|Araly1|495546|fgenesh2_kg.8__1362__AT5G54650.1 5243 0.0 > Ahg495546 jgi|Araly1|495546|fgenesh2_kg.8__1362__AT5G54650.1 Length=3350 Score = 5243 bits (2839), Expect = 0.0 Identities = 3194/3361 (95%), Gaps = 42/3361 (1%) Strand=Plus/Plus Query 53 ATGAAGCTTGAGAGCTAATATCTCCGTGAATTTATCTCGTCGACTTTTCTCGGAAAAAGT 112 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAAGCTTGAGAGCTAATATCTCCGTGAATTTATCTCGTCGACTTTTCTCGGAAAAA-- 58 Query 113 AAAAGGTTGAAAC-TTTTTTGGTCTCTCTCTGGTCAAAATTCTGGGTTTGGTTGAACGCA 171 ||||||||||||| ||||||||||||||||||||||||||| ||| |||||| ||||| | Sbjct 59 AAAAGGTTGAAACTTTTTTTGGTCTCTCTCTGGTCAAAATTTTGGTTTTGGTAGAACGGA 118 Query 172 CCGACGACAAATCGCATTGTCAACATTTGGATCTGGCCAACAATCATTAGCACCAACTCT 231 ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 119 CCGACGACAAATCGCATTGTCAA-AATTGGATCTGGCCAACAATCATTAGCACCAACTCT 177 Query 232 TCCCCTTTTGTGCTGTCTC--G-------AAAACGTGTAATTGATCTCGTGGCATTGTAG 282 ||||||||||||||||||| | |||||||||||||||||||| ||||||||| Sbjct 178 TCCCCTTTTGTGCTGTCTCTTGTTTTCTCGAAACGTGTAATTGATCTCGTCGCATTGTAG 237 Query 283 TAAGAAGCTTTAATTTAATTGGTCCTCCAAGGAAATTGCATCGAAGTCAGCTCCAAATTT 342 |||||||||| ||| |||| ||| |||||||||||||||||||||||||||||||| || Sbjct 238 -AAGAAGCTTT-ATTAAATTAGTCTTCCAAGGAAATTGCATCGAAGTCAGCTCCAAA-TT 294 Query 343 TCGATCAGGGTTGTTGAGCTTTTGTGTTAAAGTTTCGATCTTTATCGAATTTCAGCAAAA 402 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||| Sbjct 295 TCGATCAGGGTTGTTGAGTTTTTGTGTTAAAGTTTCGATCTTTATCGAGTTTCAGCCAAA 354 Query 403 AGCTGTAGAATCGGCAATTTGGTTCTATTGAGTATCTGATGAAATGAGAAGCAAAAGATA 462 ||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 355 AGCTGTATAATCAGCAATTTGATTCTATTGAGTATCTGATGAAATGAGAAGCAAAAGATA 414 Query 463 TGGTTGGAATGATTCGAGGAGGAATGGGTGATCAGAATTGGAGTCGTTTAGTTTTCTGGT 522 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 415 TGGTTGGAATGATTCAAGGAGGAATGGGTGATCAGAATTGGACTCGTTTAGTTTTCTGGT 474 Query 523 TGATTCTGTTTTCTGGGTTATTGGTAATAACTTTGGAAGAGAATCCAGAAAAAGATGAGA 582 |||||||| |||||||||| ||||| ||||| |||||||||||| |||| |||||||||| Sbjct 475 TGATTCTGCTTTCTGGGTTCTTGGTGATAACATTGGAAGAGAATTCAGATAAAGATGAGA 534 Query 583 TTTTTCTTAGTCAATTCATGGCCCCATCAACAGGGCAGGTCAATGAACATATGGAAGAAA 642 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 535 TTTTTCTTAGTCAATTCATGGCCCCATCAACAGGGCAGGTCAATGAACCTATGGAAGAAA 594 Query 643 CATCATGGGCGCAGCGTTGTTGGCAAGATTCAGATTGTGTGAAGGAAGCTGTGGCAGAAT 702 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || Sbjct 595 CATCATGGGCGCAGCGTTGTTGGCAAGATTCAGATTGTGTGAAGGAAGCTGTCGCAGCAT 654 Query 703 TCAATTTATGTTTTCCAGGATCAAAGGATAGTAGGGAACTATTTGGTTTGAACCATACCA 762 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 655 TCAATTTATGTTTTCCAGGATCAAAGGATAGTAGGGAACTATTTGGTTTGAATCATTCCC 714 Query 763 ATCTGAAGCAGACTCTTCTTGATTGTATCCAAGAAAAAGGAAAGTTAAATGGTCATAACC 822 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 715 ATCTGAAGCAGACTCTTCTTGATTGTATCCAAGAAAAAGGAAAGTTAAATGGTAATAACC 774 Query 823 CCAAGTATCTGGAGCTCTTATCATCTATGCTTGATATTCCGAGGAGAAATCTAGCTACTA 882 |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 775 CCAATTATCTCGAGCTCTTATCATCTATGCTTGATATTCCGAGGAGAAATCTAGCTACTA 834 Query 883 AACCCGGCTCTTCCCC-T-T-C--C-CCTTCACCTTCCCGCCCTCCTAAGCGTAGTCGGG 936 ||| ||||||||||| | | | | |||| ||||||||| |||||||||| ||||| || Sbjct 835 GACCTGGCTCTTCCCCTTCTCCTTCACCTTTACCTTCCCGTCCTCCTAAGCATAGTCCGG 894 Query 937 GGCCTCCGCGCCCACCTACTCGACCAAAATCCCCACCTCCTCGGAAATCATCTTTTCCAC 996 || ||| |||||||||||||||| ||| |||||||||||| ||||||||||||||||||| Sbjct 895 GGACTCGGCGCCCACCTACTCGATCAAGATCCCCACCTCCGCGGAAATCATCTTTTCCAC 954 Query 997 CATCAAGATCTCCCCCTCCTCCTCCTGCTAAGAAAAACGCTTCTAAAAATTCAACTTCTG 1056 |||||||||| |||||||| ||||||||||| ||||||| |||||||||||||||||||| Sbjct 955 CATCAAGATCCCCCCCTCCCCCTCCTGCTAAAAAAAACGTTTCTAAAAATTCAACTTCTG 1014 Query 1057 CACCTGTTTCACCTGCGaaaaaaaaaGAGGATCATGAGAAAACAATCATCATTGCTGTTG 1116 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1015 CACCTGTTTCACCTGCGAAAAGAAAAGAGGATCATGAGAAAACAATCATCATTGCTGTTG 1074 Query 1117 TTGTGACTGCAGTTTCTACGTTTTTGTTGGCTGCATTATTCTTCTTATGCTGCTCCAGGG 1176 |||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||| Sbjct 1075 TTGTGACTGCAGTTTCCACGTTTTTGTTAGCTGCATTATTCTTCTTATGCTGCACCAGGG 1134 Query 1177 TTTGTGGAAATGGTTCAGGAGGCAGGAAAAACGATGAAAGGCCTCTTCTCAGTTTAAGCA 1236 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1135 TTTGTGGAAATGGTTCAGGAGGCAGGAAAAACGATGAACGGCCTCTTCTCAGTTTAAGCA 1194 Query 1237 GTAGTGATTACTCTGTTGGTTCCTCCATCAACTATGGTGGTTCGGTCAAAGGAGATAAGC 1296 |||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||| Sbjct 1195 GTAGCGATTACTCTGTTGGTTCCTCCATCAATTATGGTGGTTCTGTCAAAGGAGACAAGT 1254 Query 1297 AGGGTCATCAATCTTTTAATATTTACTCAAACCAAGGAAAAATGTCATCTTTCGATGGAA 1356 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1255 TGGGTCATCAATCTTTTAATATTTACTCAAACCAAGGAAAAATGTCATCTTTCGATGGAA 1314 Query 1357 GTAACTCTGACACTTCAGATTCGTTAGAAGAACGGCTATCACACGAAGGCCTGAGAAATA 1416 |||| ||||||| ||| ||||||||||||||| |||| ||||||||||| || |||||| Sbjct 1315 GTAATTCTGACAATTCGGATTCGTTAGAAGAAAGGCTGTCACACGAAGGAATGCGAAATA 1374 Query 1417 ATAGTATTACCAATCACGGGCTTCCACCTTTGAAGCCTCCACCTGGAAGAACAGCTTCTG 1476 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1375 ATAGTATCACTAATCACGGGCTTCCACCTTTGAAGCCTCCACCTGGAAGAACAGCTTCTG 1434 Query 1477 TACTTTCAGGGAAGTCTTTTTCTGGAAAAGTGGAGCCTCTTCCACCGGAACCACCCAAAT 1536 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1435 TACTCTCAGGGAAGTCTTTTTCTGGAAAAGTGGAGCCTCTTCCACCGGAACCACCCAAAT 1494 Query 1537 TTCTTAAGGTATCCTC-GAAAAAGGCTTCTGCTCCTCCACCGCCAGTTCCAGCACCGCAA 1595 |||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||| | Sbjct 1495 TTCTTAAGGTATCCTCAAAAAAAGG-TTCTGCTCCTCCGCCGCCAGTTCCAGCACCGCCA 1553 Query 1596 ATGCCATCTTCTGCTGGTCCTCCACGACCGCCCCCTCCAGCTCCGCCACCTGGTTCTGGT 1655 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1554 ATGCCATCTTCTGCTGGTCCTCCACGACCGCCTCCTCCAGCTCCGCCACCTGGTTCTGGT 1613 Query 1656 GGGCCTAAGCCACCACCTCCTCCTGGACCAAAAGGACCACGTCCGCCTCCACCAATGAGT 1715 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1614 GGGCCTAAGCCACCACCTCCTCCTGGACCAAAAGGACCACGTCCGCCTCCACCGATGAGT 1673 Query 1716 CTGGGCCCAAAAGCACCCCGACCGCCTTCTGGGCCAGCAGA-TGCATTAGATGATGATGC 1774 || ||||||||||||||||||||| |||||||||||||| | |||| |||||||||||| Sbjct 1674 CTCGGCCCAAAAGCACCCCGACCGTCTTCTGGGCCAGCA-ACCGCATCAGATGATGATGC 1732 Query 1775 TCCCAAAACAAAGCTGAAGCCATTTTTCTGGGATAAAGTGCAAGCAAACCCAGAACATTC 1834 ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1733 TCCCAAAACAAAGTTGAAGCCATTTTTCTGGGATAAAGTGCAAGCAAACCCAGAGCATTC 1792 Query 1835 AATGGTTTGGAATGATATAAGATCAGGATCCTTTCAGTTCAATGAAGAGATGATAGAGTC 1894 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1793 AATGGTTTGGAATGATATAAGATCAGGATCCTTTCAGTTCAATGAAGAGATGATAGAGTC 1852 Query 1895 GTTATTTGGATATGCAGCAGCAGACAAGAATAAAAACGACAAGAAGGGGTCCTCTGGACA 1954 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1853 GTTATTTGGATATGCAGCAGCAGACAAGAATAAAAACGACAAGAAGGGGTCCTCTGGACA 1912 Query 1955 AGCTGCTTTACCTCAGTTTGTTCAGATCCTCGAACCAAAGAAAGGACAAAATCTATCAAT 2014 ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 1913 AGCTGCTTTACCTCAGTTTGTTCAGATTCTGGAACCAAAGAAAGGACAAAATCTATCAAT 1972 Query 2015 TCTTTTGCGTGCTTTGAATGCGACAACTGAAGAAGTGTGTGATGCACTTCGCGAAGGAAA 2074 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1973 TCTTTTGCGTGCTTTGAATGCGACAACTGAAGAAGTGTGTGATGCACTCCGCGAAGGAAA 2032 Query 2075 TGAGCTTCCTGTAGAATTCATTCAGACTCTGTTAAAGATGGCACCAACACCAGAAGAAGA 2134 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2033 TGAGCTTCCTGTAGAATTCATTCAGACTCTGTTAAAGATGGCACCAACACCAGAAGAAGA 2092 Query 2135 ACTAAAACTTAGATTATACTGCGGTGAAATAGCTCAACTGGGATCCGCTGAACGATTCCT 2194 |||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||| Sbjct 2093 ACTAAAGCTTAGATTATACTGTGGTGAAATAGCCCAACTGGGATCTGCTGAACGATTCCT 2152 Query 2195 GAAAGCAGTCGTTGATATCCCTTTTGCTTTCAAGCGTCTAGAAGCACTTCTATTTATGTG 2254 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2153 GAAAGCAGTCGTTGATATCCCTTTTGCTTTCAAGCGTCTAGAGGCACTTCTATTTATGTG 2212 Query 2255 TACACTCCATGAAGAAATGGCTTTTGTTAAAGAATCATTTCAGAAATTGGAGGTTGCTTG 2314 ||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||| Sbjct 2213 TACACTCCATGAAGAAATGGCCTTTGTTAAAGAGTCATTTCAGACATTGGAGGTTGCTTG 2272 Query 2315 TAAAGAACTTAGGGGAAGTCGGCTGTTCCTGAAGCTCTTAGAGGCAGTTCTTAAGACCGG 2374 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2273 TAAAGAACTTAGGGGAAGTCGGCTGTTCCTGAAGCTCTTAGAGGCGGTTCTTAAGACCGG 2332 Query 2375 AAACCGAATGAATGATGGTACATTTAGGGGTGGTGCTCAAGCTTTCAAGCTGGACACTCT 2434 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 2333 AAACCGAATGAATGATGGTACATTTAGGGGTGGTGCGCAAGCTTTCAAGCTGGACACTCT 2392 Query 2435 TTTGAAATTAGCAGACGTCAAGGGAACAGATGGGAAAACAACGCTCCTCCACTTT-GTTG 2493 ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||| Sbjct 2393 TTTGAAATTAGCAGACGTCAAGGGAACTGATGGGAAAACAACGCTCCTCCA-TTTCGTTG 2451 Query 2494 TTCAAGAGATAATTAGGACTGAAGGTGTAAGAGCGGCTCGTACTATCAGAGAGAGCCAAA 2553 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 2452 TTCAAGAGATAATTAGGACTGAAGGTGTAAGAGCGGCCCGTACTATCAGAGAGAGCCAAA 2511 Query 2554 GTTTCTCAAGTGTTAAAACAGAGGATCTCCTAGTCGAGGAAACCTCTGAAGAGTCAGAAG 2613 ||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| |||||| Sbjct 2512 GTTTCTCAAGTGTTAAAACAGAGGATCTCTTAGCCGAGGAAACTTCTGAAGAGACAGAAG 2571 Query 2614 AGAATTACCGTAATCTTGGACTTGAGAAAGTTTCAGGCTTGAGCAGTGAGCTTGAACATG 2673 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2572 AGAATTACCGTAATCTTGGACTTCAGAAAGTTTCAGGCTTGAGCAGTGAGCTTGAACATG 2631 Query 2674 TAAAGAAATCTGCAAACATAGATGCCGATGGTTTAACAGGGACTGTTCTTAAAATGGGTC 2733 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2632 TAAAGAAATCTGCAAACATAGATGCTGATGGTTTAACAGGGACTGTTCTTAAAATGGGTC 2691 Query 2734 ATGCTTTGTCGAAAGCTCGAGACTTTGTCAACTCAGAGATGAAAAGTTCAGGCGAGGAGA 2793 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 2692 ATGCTTTGTCGAAAGCTCGAGACTTTGTCAACTCAGAGATGAAGAGTTCAGGCGAGGAAA 2751 Query 2794 GTGGGTTTCGTGAAGCGCTTGAAGATTTTATTCAAAATGCTGAAGGAAGCATCATGTCCA 2853 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2752 GTGGGTTTCGTGAAGCACTTGAAGATTTTATTCAAAATGCTGAAGGAAGCATCATGTCCA 2811 Query 2854 TACTCGAGGAAGAGAAGAGAATAATGGCTTTGGTGAAAAGTACAGGGGACTATTTCCATG 2913 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2812 TACTCGGGGAAGAGAAGAGAATAATGGCTTTGGTGAAAAGTACAGGGGACTATTTCCATG 2871 Query 2914 GCAAAGCAGGAAAAGACGAAGGGTTGCGTTTGTTTGTGATTGTGCGCGATTTTCTGATAA 2973 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 2872 GCAAAGCAGGAAAAGATGAAGGGTTGCGTTTGTTTGTGATTGTACGCGATTTTCTGATAA 2931 Query 2974 TCTTAGATAAATCCTGCAAAGAAGTCAGAGAAGCACGAGGAAGACCCGTAAGGATGGCCA 3033 |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2932 TCTTAGATAAGTCCTGCAAAGAAGTCAGAGAGGCACGAGGAAGACCCGTAAGGATGGCCA 2991 Query 3034 GAAAACAAGGCTCAACAGCCTCAGCATCTTCTGAAACTCCAAGACAAACGCCTTCATTAG 3093 ||||||| ||||||||||||||| | ||||| |||||||||||||||||||| ||||||| Sbjct 2992 GAAAACAGGGCTCAACAGCCTCATCTTCTTCAGAAACTCCAAGACAAACGCCATCATTAG 3051 Query 3094 ATCCTAGGCAGAAGCTGTTTCCAGCTATTACAGAGAGACGCGTGGATCAGTCTAGTTCAG 3153 ||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 3052 ATCCTAGACAGAAACTGTTTCCAGCTATTACAGAGAGACGCATGGATCAGTCTAGTTCAG 3111 Query 3154 ATTCAGACTAAAAAGTACAAATCTTTGGTTTCGTTACCTGTTAGGACATAATTCATCTGC 3213 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 3112 ATTCAGACTAAAAAGTACAAATCTTTGGTTTCGTTACCTGTTAGGACATAATTCCTCTGC 3171 Query 3214 TGTTTTGCTGAGAGCTT---AT----CTTTTCCTGCTGTGAGTGTAATGGCATTAACCCT 3266 |||||||||||||||| || |||||||| ||| ||||||||||||||||||||| Sbjct 3172 GGTTTTGCTGAGAGCTTCTGATTAATCTTTTCCTACTGGGAGTGTAATGGCATTAACCCT 3231 Query 3267 CAAGACATGTCAGGTTTTAGTCACTGAT--T-AT--GAGTTTTTCAGATGTAATTTAAAG 3321 || ||||||||||||||||||||||||| | || |||||||||||||||||||||||| Sbjct 3232 CA-GACATGTCAGGTTTTAGTCACTGATGATTATATGAGTTTTTCAGATGTAATTTAAAG 3290 Query 3322 AGGCATAGACACTGTCACTCACTTGTACCAAtttttttCACATTTAGTCTTAGAAATACT 3381 ||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| ||| Sbjct 3291 AGGCATAGACACTGTCACTCACTTGTACCAACTTTTT-CACATTTAGTTTTAGAAACACT 3349 Query 3382 T 3382 | Sbjct 3350 T 3350 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 128025675572 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5