BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54650.1
Length=3391
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495546 jgi|Araly1|495546|fgenesh2_kg.8__1362__AT5G54650.1 5243 0.0
> Ahg495546 jgi|Araly1|495546|fgenesh2_kg.8__1362__AT5G54650.1
Length=3350
Score = 5243 bits (2839), Expect = 0.0
Identities = 3194/3361 (95%), Gaps = 42/3361 (1%)
Strand=Plus/Plus
Query 53 ATGAAGCTTGAGAGCTAATATCTCCGTGAATTTATCTCGTCGACTTTTCTCGGAAAAAGT 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGCTTGAGAGCTAATATCTCCGTGAATTTATCTCGTCGACTTTTCTCGGAAAAA-- 58
Query 113 AAAAGGTTGAAAC-TTTTTTGGTCTCTCTCTGGTCAAAATTCTGGGTTTGGTTGAACGCA 171
||||||||||||| ||||||||||||||||||||||||||| ||| |||||| ||||| |
Sbjct 59 AAAAGGTTGAAACTTTTTTTGGTCTCTCTCTGGTCAAAATTTTGGTTTTGGTAGAACGGA 118
Query 172 CCGACGACAAATCGCATTGTCAACATTTGGATCTGGCCAACAATCATTAGCACCAACTCT 231
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 119 CCGACGACAAATCGCATTGTCAA-AATTGGATCTGGCCAACAATCATTAGCACCAACTCT 177
Query 232 TCCCCTTTTGTGCTGTCTC--G-------AAAACGTGTAATTGATCTCGTGGCATTGTAG 282
||||||||||||||||||| | |||||||||||||||||||| |||||||||
Sbjct 178 TCCCCTTTTGTGCTGTCTCTTGTTTTCTCGAAACGTGTAATTGATCTCGTCGCATTGTAG 237
Query 283 TAAGAAGCTTTAATTTAATTGGTCCTCCAAGGAAATTGCATCGAAGTCAGCTCCAAATTT 342
|||||||||| ||| |||| ||| |||||||||||||||||||||||||||||||| ||
Sbjct 238 -AAGAAGCTTT-ATTAAATTAGTCTTCCAAGGAAATTGCATCGAAGTCAGCTCCAAA-TT 294
Query 343 TCGATCAGGGTTGTTGAGCTTTTGTGTTAAAGTTTCGATCTTTATCGAATTTCAGCAAAA 402
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||
Sbjct 295 TCGATCAGGGTTGTTGAGTTTTTGTGTTAAAGTTTCGATCTTTATCGAGTTTCAGCCAAA 354
Query 403 AGCTGTAGAATCGGCAATTTGGTTCTATTGAGTATCTGATGAAATGAGAAGCAAAAGATA 462
||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 355 AGCTGTATAATCAGCAATTTGATTCTATTGAGTATCTGATGAAATGAGAAGCAAAAGATA 414
Query 463 TGGTTGGAATGATTCGAGGAGGAATGGGTGATCAGAATTGGAGTCGTTTAGTTTTCTGGT 522
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 415 TGGTTGGAATGATTCAAGGAGGAATGGGTGATCAGAATTGGACTCGTTTAGTTTTCTGGT 474
Query 523 TGATTCTGTTTTCTGGGTTATTGGTAATAACTTTGGAAGAGAATCCAGAAAAAGATGAGA 582
|||||||| |||||||||| ||||| ||||| |||||||||||| |||| ||||||||||
Sbjct 475 TGATTCTGCTTTCTGGGTTCTTGGTGATAACATTGGAAGAGAATTCAGATAAAGATGAGA 534
Query 583 TTTTTCTTAGTCAATTCATGGCCCCATCAACAGGGCAGGTCAATGAACATATGGAAGAAA 642
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 535 TTTTTCTTAGTCAATTCATGGCCCCATCAACAGGGCAGGTCAATGAACCTATGGAAGAAA 594
Query 643 CATCATGGGCGCAGCGTTGTTGGCAAGATTCAGATTGTGTGAAGGAAGCTGTGGCAGAAT 702
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 595 CATCATGGGCGCAGCGTTGTTGGCAAGATTCAGATTGTGTGAAGGAAGCTGTCGCAGCAT 654
Query 703 TCAATTTATGTTTTCCAGGATCAAAGGATAGTAGGGAACTATTTGGTTTGAACCATACCA 762
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 655 TCAATTTATGTTTTCCAGGATCAAAGGATAGTAGGGAACTATTTGGTTTGAATCATTCCC 714
Query 763 ATCTGAAGCAGACTCTTCTTGATTGTATCCAAGAAAAAGGAAAGTTAAATGGTCATAACC 822
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 715 ATCTGAAGCAGACTCTTCTTGATTGTATCCAAGAAAAAGGAAAGTTAAATGGTAATAACC 774
Query 823 CCAAGTATCTGGAGCTCTTATCATCTATGCTTGATATTCCGAGGAGAAATCTAGCTACTA 882
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 CCAATTATCTCGAGCTCTTATCATCTATGCTTGATATTCCGAGGAGAAATCTAGCTACTA 834
Query 883 AACCCGGCTCTTCCCC-T-T-C--C-CCTTCACCTTCCCGCCCTCCTAAGCGTAGTCGGG 936
||| ||||||||||| | | | | |||| ||||||||| |||||||||| ||||| ||
Sbjct 835 GACCTGGCTCTTCCCCTTCTCCTTCACCTTTACCTTCCCGTCCTCCTAAGCATAGTCCGG 894
Query 937 GGCCTCCGCGCCCACCTACTCGACCAAAATCCCCACCTCCTCGGAAATCATCTTTTCCAC 996
|| ||| |||||||||||||||| ||| |||||||||||| |||||||||||||||||||
Sbjct 895 GGACTCGGCGCCCACCTACTCGATCAAGATCCCCACCTCCGCGGAAATCATCTTTTCCAC 954
Query 997 CATCAAGATCTCCCCCTCCTCCTCCTGCTAAGAAAAACGCTTCTAAAAATTCAACTTCTG 1056
|||||||||| |||||||| ||||||||||| ||||||| ||||||||||||||||||||
Sbjct 955 CATCAAGATCCCCCCCTCCCCCTCCTGCTAAAAAAAACGTTTCTAAAAATTCAACTTCTG 1014
Query 1057 CACCTGTTTCACCTGCGaaaaaaaaaGAGGATCATGAGAAAACAATCATCATTGCTGTTG 1116
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1015 CACCTGTTTCACCTGCGAAAAGAAAAGAGGATCATGAGAAAACAATCATCATTGCTGTTG 1074
Query 1117 TTGTGACTGCAGTTTCTACGTTTTTGTTGGCTGCATTATTCTTCTTATGCTGCTCCAGGG 1176
|||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1075 TTGTGACTGCAGTTTCCACGTTTTTGTTAGCTGCATTATTCTTCTTATGCTGCACCAGGG 1134
Query 1177 TTTGTGGAAATGGTTCAGGAGGCAGGAAAAACGATGAAAGGCCTCTTCTCAGTTTAAGCA 1236
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1135 TTTGTGGAAATGGTTCAGGAGGCAGGAAAAACGATGAACGGCCTCTTCTCAGTTTAAGCA 1194
Query 1237 GTAGTGATTACTCTGTTGGTTCCTCCATCAACTATGGTGGTTCGGTCAAAGGAGATAAGC 1296
|||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 1195 GTAGCGATTACTCTGTTGGTTCCTCCATCAATTATGGTGGTTCTGTCAAAGGAGACAAGT 1254
Query 1297 AGGGTCATCAATCTTTTAATATTTACTCAAACCAAGGAAAAATGTCATCTTTCGATGGAA 1356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 TGGGTCATCAATCTTTTAATATTTACTCAAACCAAGGAAAAATGTCATCTTTCGATGGAA 1314
Query 1357 GTAACTCTGACACTTCAGATTCGTTAGAAGAACGGCTATCACACGAAGGCCTGAGAAATA 1416
|||| ||||||| ||| ||||||||||||||| |||| ||||||||||| || ||||||
Sbjct 1315 GTAATTCTGACAATTCGGATTCGTTAGAAGAAAGGCTGTCACACGAAGGAATGCGAAATA 1374
Query 1417 ATAGTATTACCAATCACGGGCTTCCACCTTTGAAGCCTCCACCTGGAAGAACAGCTTCTG 1476
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 ATAGTATCACTAATCACGGGCTTCCACCTTTGAAGCCTCCACCTGGAAGAACAGCTTCTG 1434
Query 1477 TACTTTCAGGGAAGTCTTTTTCTGGAAAAGTGGAGCCTCTTCCACCGGAACCACCCAAAT 1536
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 TACTCTCAGGGAAGTCTTTTTCTGGAAAAGTGGAGCCTCTTCCACCGGAACCACCCAAAT 1494
Query 1537 TTCTTAAGGTATCCTC-GAAAAAGGCTTCTGCTCCTCCACCGCCAGTTCCAGCACCGCAA 1595
|||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||| |
Sbjct 1495 TTCTTAAGGTATCCTCAAAAAAAGG-TTCTGCTCCTCCGCCGCCAGTTCCAGCACCGCCA 1553
Query 1596 ATGCCATCTTCTGCTGGTCCTCCACGACCGCCCCCTCCAGCTCCGCCACCTGGTTCTGGT 1655
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1554 ATGCCATCTTCTGCTGGTCCTCCACGACCGCCTCCTCCAGCTCCGCCACCTGGTTCTGGT 1613
Query 1656 GGGCCTAAGCCACCACCTCCTCCTGGACCAAAAGGACCACGTCCGCCTCCACCAATGAGT 1715
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1614 GGGCCTAAGCCACCACCTCCTCCTGGACCAAAAGGACCACGTCCGCCTCCACCGATGAGT 1673
Query 1716 CTGGGCCCAAAAGCACCCCGACCGCCTTCTGGGCCAGCAGA-TGCATTAGATGATGATGC 1774
|| ||||||||||||||||||||| |||||||||||||| | |||| ||||||||||||
Sbjct 1674 CTCGGCCCAAAAGCACCCCGACCGTCTTCTGGGCCAGCA-ACCGCATCAGATGATGATGC 1732
Query 1775 TCCCAAAACAAAGCTGAAGCCATTTTTCTGGGATAAAGTGCAAGCAAACCCAGAACATTC 1834
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1733 TCCCAAAACAAAGTTGAAGCCATTTTTCTGGGATAAAGTGCAAGCAAACCCAGAGCATTC 1792
Query 1835 AATGGTTTGGAATGATATAAGATCAGGATCCTTTCAGTTCAATGAAGAGATGATAGAGTC 1894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1793 AATGGTTTGGAATGATATAAGATCAGGATCCTTTCAGTTCAATGAAGAGATGATAGAGTC 1852
Query 1895 GTTATTTGGATATGCAGCAGCAGACAAGAATAAAAACGACAAGAAGGGGTCCTCTGGACA 1954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1853 GTTATTTGGATATGCAGCAGCAGACAAGAATAAAAACGACAAGAAGGGGTCCTCTGGACA 1912
Query 1955 AGCTGCTTTACCTCAGTTTGTTCAGATCCTCGAACCAAAGAAAGGACAAAATCTATCAAT 2014
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1913 AGCTGCTTTACCTCAGTTTGTTCAGATTCTGGAACCAAAGAAAGGACAAAATCTATCAAT 1972
Query 2015 TCTTTTGCGTGCTTTGAATGCGACAACTGAAGAAGTGTGTGATGCACTTCGCGAAGGAAA 2074
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1973 TCTTTTGCGTGCTTTGAATGCGACAACTGAAGAAGTGTGTGATGCACTCCGCGAAGGAAA 2032
Query 2075 TGAGCTTCCTGTAGAATTCATTCAGACTCTGTTAAAGATGGCACCAACACCAGAAGAAGA 2134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2033 TGAGCTTCCTGTAGAATTCATTCAGACTCTGTTAAAGATGGCACCAACACCAGAAGAAGA 2092
Query 2135 ACTAAAACTTAGATTATACTGCGGTGAAATAGCTCAACTGGGATCCGCTGAACGATTCCT 2194
|||||| |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||
Sbjct 2093 ACTAAAGCTTAGATTATACTGTGGTGAAATAGCCCAACTGGGATCTGCTGAACGATTCCT 2152
Query 2195 GAAAGCAGTCGTTGATATCCCTTTTGCTTTCAAGCGTCTAGAAGCACTTCTATTTATGTG 2254
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2153 GAAAGCAGTCGTTGATATCCCTTTTGCTTTCAAGCGTCTAGAGGCACTTCTATTTATGTG 2212
Query 2255 TACACTCCATGAAGAAATGGCTTTTGTTAAAGAATCATTTCAGAAATTGGAGGTTGCTTG 2314
||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||
Sbjct 2213 TACACTCCATGAAGAAATGGCCTTTGTTAAAGAGTCATTTCAGACATTGGAGGTTGCTTG 2272
Query 2315 TAAAGAACTTAGGGGAAGTCGGCTGTTCCTGAAGCTCTTAGAGGCAGTTCTTAAGACCGG 2374
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2273 TAAAGAACTTAGGGGAAGTCGGCTGTTCCTGAAGCTCTTAGAGGCGGTTCTTAAGACCGG 2332
Query 2375 AAACCGAATGAATGATGGTACATTTAGGGGTGGTGCTCAAGCTTTCAAGCTGGACACTCT 2434
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2333 AAACCGAATGAATGATGGTACATTTAGGGGTGGTGCGCAAGCTTTCAAGCTGGACACTCT 2392
Query 2435 TTTGAAATTAGCAGACGTCAAGGGAACAGATGGGAAAACAACGCTCCTCCACTTT-GTTG 2493
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||
Sbjct 2393 TTTGAAATTAGCAGACGTCAAGGGAACTGATGGGAAAACAACGCTCCTCCA-TTTCGTTG 2451
Query 2494 TTCAAGAGATAATTAGGACTGAAGGTGTAAGAGCGGCTCGTACTATCAGAGAGAGCCAAA 2553
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2452 TTCAAGAGATAATTAGGACTGAAGGTGTAAGAGCGGCCCGTACTATCAGAGAGAGCCAAA 2511
Query 2554 GTTTCTCAAGTGTTAAAACAGAGGATCTCCTAGTCGAGGAAACCTCTGAAGAGTCAGAAG 2613
||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||||||
Sbjct 2512 GTTTCTCAAGTGTTAAAACAGAGGATCTCTTAGCCGAGGAAACTTCTGAAGAGACAGAAG 2571
Query 2614 AGAATTACCGTAATCTTGGACTTGAGAAAGTTTCAGGCTTGAGCAGTGAGCTTGAACATG 2673
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2572 AGAATTACCGTAATCTTGGACTTCAGAAAGTTTCAGGCTTGAGCAGTGAGCTTGAACATG 2631
Query 2674 TAAAGAAATCTGCAAACATAGATGCCGATGGTTTAACAGGGACTGTTCTTAAAATGGGTC 2733
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2632 TAAAGAAATCTGCAAACATAGATGCTGATGGTTTAACAGGGACTGTTCTTAAAATGGGTC 2691
Query 2734 ATGCTTTGTCGAAAGCTCGAGACTTTGTCAACTCAGAGATGAAAAGTTCAGGCGAGGAGA 2793
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 2692 ATGCTTTGTCGAAAGCTCGAGACTTTGTCAACTCAGAGATGAAGAGTTCAGGCGAGGAAA 2751
Query 2794 GTGGGTTTCGTGAAGCGCTTGAAGATTTTATTCAAAATGCTGAAGGAAGCATCATGTCCA 2853
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2752 GTGGGTTTCGTGAAGCACTTGAAGATTTTATTCAAAATGCTGAAGGAAGCATCATGTCCA 2811
Query 2854 TACTCGAGGAAGAGAAGAGAATAATGGCTTTGGTGAAAAGTACAGGGGACTATTTCCATG 2913
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2812 TACTCGGGGAAGAGAAGAGAATAATGGCTTTGGTGAAAAGTACAGGGGACTATTTCCATG 2871
Query 2914 GCAAAGCAGGAAAAGACGAAGGGTTGCGTTTGTTTGTGATTGTGCGCGATTTTCTGATAA 2973
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2872 GCAAAGCAGGAAAAGATGAAGGGTTGCGTTTGTTTGTGATTGTACGCGATTTTCTGATAA 2931
Query 2974 TCTTAGATAAATCCTGCAAAGAAGTCAGAGAAGCACGAGGAAGACCCGTAAGGATGGCCA 3033
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2932 TCTTAGATAAGTCCTGCAAAGAAGTCAGAGAGGCACGAGGAAGACCCGTAAGGATGGCCA 2991
Query 3034 GAAAACAAGGCTCAACAGCCTCAGCATCTTCTGAAACTCCAAGACAAACGCCTTCATTAG 3093
||||||| ||||||||||||||| | ||||| |||||||||||||||||||| |||||||
Sbjct 2992 GAAAACAGGGCTCAACAGCCTCATCTTCTTCAGAAACTCCAAGACAAACGCCATCATTAG 3051
Query 3094 ATCCTAGGCAGAAGCTGTTTCCAGCTATTACAGAGAGACGCGTGGATCAGTCTAGTTCAG 3153
||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3052 ATCCTAGACAGAAACTGTTTCCAGCTATTACAGAGAGACGCATGGATCAGTCTAGTTCAG 3111
Query 3154 ATTCAGACTAAAAAGTACAAATCTTTGGTTTCGTTACCTGTTAGGACATAATTCATCTGC 3213
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3112 ATTCAGACTAAAAAGTACAAATCTTTGGTTTCGTTACCTGTTAGGACATAATTCCTCTGC 3171
Query 3214 TGTTTTGCTGAGAGCTT---AT----CTTTTCCTGCTGTGAGTGTAATGGCATTAACCCT 3266
|||||||||||||||| || |||||||| ||| |||||||||||||||||||||
Sbjct 3172 GGTTTTGCTGAGAGCTTCTGATTAATCTTTTCCTACTGGGAGTGTAATGGCATTAACCCT 3231
Query 3267 CAAGACATGTCAGGTTTTAGTCACTGAT--T-AT--GAGTTTTTCAGATGTAATTTAAAG 3321
|| ||||||||||||||||||||||||| | || ||||||||||||||||||||||||
Sbjct 3232 CA-GACATGTCAGGTTTTAGTCACTGATGATTATATGAGTTTTTCAGATGTAATTTAAAG 3290
Query 3322 AGGCATAGACACTGTCACTCACTTGTACCAAtttttttCACATTTAGTCTTAGAAATACT 3381
||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||
Sbjct 3291 AGGCATAGACACTGTCACTCACTTGTACCAACTTTTT-CACATTTAGTTTTAGAAACACT 3349
Query 3382 T 3382
|
Sbjct 3350 T 3350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128025675572
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5