BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54680.1
Length=1201
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495549 jgi|Araly1|495549|fgenesh2_kg.8__1365__AT5G54680.1 1770 0.0
> Ahg495549 jgi|Araly1|495549|fgenesh2_kg.8__1365__AT5G54680.1
Length=1159
Score = 1770 bits (958), Expect = 0.0
Identities = 1131/1205 (94%), Gaps = 50/1205 (4%)
Strand=Plus/Plus
Query 1 AAGATTCCCCAATTCGTCTCCTCCAACAGTTttcttcttctcttcttcttTGGGTGTTCC 60
|||||||| |||||||||||||||||||||||| || ||||| ||||||||| ||||||
Sbjct 1 AAGATTCCTCAATTCGTCTCCTCCAACAGTTTT-TT-TTCTC--CTTCTTTGGTTGTTCC 56
Query 61 TTCCACCAACGGCAGAAATCGATTTGGCTTAAATCTCCCCCTCCTTTCGATCTCTCTGAT 120
|||||||||||||||||||| | | | | |||||||||||||||||
Sbjct 57 TTCCACCAACGGCAGAAATC------G-----A--T-----T-CTTTCGATCTCTCTGAT 97
Query 121 CGCCGCCGGGAACATTCAATTTCCCGGGAGTTCAACaaaaaaaaaaCTCTCCGtttttat 180
|||||||||||| ||| |||| || ||||||| ||||||| | |
Sbjct 98 CGCCGCCGGGAAGATTTAATTACCTGGGAGTT------TAAAAAAA-----------T-T 139
Query 181 ttttccccctttttCACCGGTGGAAGTTTCCGGAGATGGTGTCACCCGAAAACGCTAATT 240
|||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 140 TTTT-CCCC-TTTTCACCGGTGGAAGTTTCAGGAGATGGTGTCACCCGAAAACGCTAATT 197
Query 241 GGATTTGTGACTTGATCGATGCTGATTACGGAAGTTTCACAATCCAAGGTCCTGGTTTCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 GGATTTGTGACTTGATCGATGCTGATTACGGAAGTTTCACAATCCAAGGTCCTGGTTTCT 257
Query 301 CTTGGCCTGTTCAGCAACCTATTGGTGTTTCTTCTAACTCCAGTGCTGGAGTTGATGGCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 CTTGGCCTGTTCAGCAACCTATTGGTGTTTCTTCTAACTCCAGTGCTGGAGTTGATGGCT 317
Query 361 CGGCTGGAAACTCAGAAGCTAGCAAAGAACCTGGATCCAAAAAGAGGGGGAGATGTGAAT 420
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 CAGCTGGAAATTCAGAAGCTAGCAAAGAACCTGGATCCAAAAAGAGGGGGAGATGTGAAT 377
Query 421 CATCCTCTGCCACTAGCTCGAAAGCATGTAGAGAGAAGCAGCGACGGGACAGGTTGAATG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 CATCCTCTGCCACTAGCTCGAAAGCATGTAGAGAGAAGCAGCGACGGGACAGGTTGAATG 437
Query 481 ACAAGTTTATGGAATTGGGTGCAATTTTGGAGCCTGGAAATCCTCCCAAAACAGACAAGG 540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 438 ACAAGTTTATGGAATTGGGTGCTATTTTGGAGCCTGGAAATCCTCCCAAAACAGACAAGG 497
Query 541 CTGCTATCTTGGTTGATGCTGTCCGCATGGTGACACAGCTACGGGGCGAGGCCCAGAAGC 600
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 498 CTGCTATCTTGGTTGATGCTGTCCGCATGGTGACACAGCTACGGGGTGAGGCCCAGAAGC 557
Query 601 TGAAGGACTCCAATTCAAGTCTTCAGGACAAAATCAAAGAGTTAAAGACTGAGAAAAACG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 TGAAGGACTCCAATTCAAGTCTTCAGGACAAAATCAAAGAGTTAAAGACTGAGAAAAACG 617
Query 661 AGCTGCGAGATGAGAAACAGAGGCTGAAGACAGAGAAAGAAAAGCTGGAGCAGCAGCTGA 720
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 AGTTGCGAGATGAGAAACAGAGGCTGAAGACAGAGAAAGAAAAGCTGGAGCAGCAGCTGA 677
Query 721 AAGCCATGAATGCTCCTCAACCAAGTTTTTTCCCAGCCCCACCTATGATGCCTACTGCTT 780
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 678 AAGCCATGAATGCTCCTCAACCAAGCTTTTTCCCAGCCCCACCTATGATGCCTACTGCTT 737
Query 781 TTGCTTCAGCGCAAGGCCAAGCTCCTGGAAACAAGATGGTGCCAATCATCAGTTACCCAG 840
||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 738 TTGCTTCTGCACAAGGCCAAGCTCCCGGAAACAAGATGGTGCCAATCATCAGTTACCCAG 797
Query 841 GAGTTGCCATGTGGCAGTTCATGCCTCCTGCTTCAGTCGATACTTCTCAGGATCATGTCC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 GAGTTGCCATGTGGCAGTTCATGCCTCCTGCTTCAGTCGATACTTCTCAGGATCATGTCC 857
Query 901 TTCGTCCTCCTGTTGCTTAATCAAGAAAAATCATCAACCGGTTTGCTTCTTGCTTCCGCT 960
|||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 858 TTCGCCCTCCTGTTGCTTAGTCAAGAAAAATCATCAACCGGTTTGCATCTTGCTTCCGCT 917
Query 961 TAAAAGAAAAGTCTCCATTTGTTTTGCTCTCCTCTCTTTCTCGGCTTTCTTAGTCTTATC 1020
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 918 TAAAAGAAAAGTCTCCATTTGTTTTGCTCTCCTCT-T--CTCGGCTTTCTTAGTCTTATC 974
Query 1021 ----CTTTTGCTTTGTCGTGTTATCATCGTAACTGTTATCTGTTGAACAATGATATGACA 1076
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 975 GTTACTTTTGCTTTGTCGTGTTATCATCGTAACTGTTATCTGTTGAACAATGATATGAAA 1034
Query 1077 TTGTAAACTCCAATTGCTTCGCGCAATGTTATCTATTCACATGTAAATTTAAGTAGAGTT 1136
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1035 TTGTAAACTCCAATTGCTTCTCGCAATGTTATCTATTCACATGTAAATTTAAGTAGAGTT 1094
Query 1137 TGGCAGATCGTCTCTCACTTTATGTGTTCTTACATTAATACATAGAATGTGGTTACTTCC 1196
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1095 TGGCAGATCGTCTCTCACTTTATGTGTTCTTACATTAATACATAGAATGGGGTTACTTTC 1154
Query 1197 TCGCC 1201
|||||
Sbjct 1155 TCGCC 1159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44832550392
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5