BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54690.1
Length=1890
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495550 jgi|Araly1|495550|fgenesh2_kg.8__1366__AT5G54690.1 2977 0.0
Ahg495549 jgi|Araly1|495549|fgenesh2_kg.8__1365__AT5G54680.1 84.2 3e-15
> Ahg495550 jgi|Araly1|495550|fgenesh2_kg.8__1366__AT5G54690.1
Length=1919
Score = 2977 bits (1612), Expect = 0.0
Identities = 1791/1876 (95%), Gaps = 18/1876 (1%)
Strand=Plus/Plus
Query 30 ACAAAGACATAATAAACAAAGAAACAGAGGAGAAACAGAGAG---ATGCAGTTACATATA 86
|||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||
Sbjct 46 ACAAAGACATAATAAATAAAGAAACAGAGGAGAAACAGAGAGATCATGCAGTTGCATATA 105
Query 87 TCTCCGAGCTTGAGACATGTGACTGTGGTCACAGGGAAAGGATTGAGAGAGTTCATAAAA 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 106 TCTCCGAGCTTGAGACATGTGACTGTGGTCACAGGGAAAGGATTGAGAGAGTTCATAAAA 165
Query 147 GTTAAGGTTGGTTCTAGAAGATTCTCTTATCAAATGGTGTTTTACTCTCTACTCTTCTTC 206
|| || ||||||||||||||||| |||||||||||| ||||||| |||||||||||||||
Sbjct 166 GTGAAAGTTGGTTCTAGAAGATTTTCTTATCAAATGATGTTTTATTCTCTACTCTTCTTC 225
Query 207 ACTTTTCTTCTCCGATTCGTCTTTGTTCTCTCCACCGTTGATACTATCGACGGCGATCCC 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 ACTTTTCTTCTCCGATTCGTCTTTGTTCTCTCCACCGTTGATACTATCGACGGCGATCCC 285
Query 267 TCTCCTTGCTCCTCTCTTGCTTGCTTGGGGAAAAGACTAAAGCCA-AAGCTTTTAGGAAG 325
|||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||
Sbjct 286 TCTCCTTGCTCCTCTCTTGCTTGCTTGGGGAAGAGACTAAAGCCACAA-CTTTTAGGAAG 344
Query 326 AAGGGTTGATTCTGGTAATGTTCCAGAAGCTATGTACCAAGTTTTAGAACAGCCTTTAAG 385
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 345 AAGGGTTGATTCTGGTAATGTTCCTGAAGCTATGTATCAAGTTTTAGAACAGCCTTTAAG 404
Query 386 CGAACAAGAACTCAAAGGAAGATCAGATATACCTCAAACACTTCAAGATTTCATGTCTGA 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 CGAACAAGAACTCAAAGGAAGATCAGATATACCTCAAACACTTCAAGATTTCATGTCTGA 464
Query 446 AGTCAAAAGAAGCAAATCAGACGCAAGAGAATTTGCTCAAAAGCTAAAAGAAATGGTGAC 505
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 AGTCAAAAGAAGTAAATCAGACGCAAGAGAATTTGCTCAAAAGCTAAAAGAAATGGTGAC 524
Query 506 ATTGATGGAACAGAGAACAAGAACGGCTAAGATTCAAGAGTATTTATATCGACATGTCGC 565
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 525 ATTGATGGAACAGAGAACAAGAACGGCTAAGATACAAGAGTATTTATATCGACACGTCGC 584
Query 566 ATCAAGCAGCATACCGAAACAACTTCACTGTTTAGCTCTTAAACTAGCCAACGAACACTC 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 585 ATCAAGCAGCATACCGAAACAACTTCACTGTTTAGCTCTTAAACTAGCCAACGAACATTC 644
Query 626 GATAAACGCAGCGGCGCGTCTCCAGCTTCCAGAAGCTGAGCTTGTCCCTATGTTGGTAGA 685
|||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 645 GATAAACGCAGCTGCGCGTCTCCAGCTTCCAGAAGCTGAGCTAGTCCCAATGTTAGTAGA 704
Query 686 CAACAACTACTTTCACTTTGTCTTGGCTTCAGACAATATTCTTGCAGCTTCGGTTGTGGC 745
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 705 CAACAACTACTTTCACTTTGTATTGGCATCAGACAATATTCTTGCAGCTTCGGTCGTGGC 764
Query 746 TAAGTCGTTGGTTCAAAATGCTTTAAGACCTCATAAGATCGTTCTTCACATCATAACGGA 805
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 765 TAAGTCATTGGTTCAAAACGCTTTAAGACCTCATAAGATCGTTCTTCACATCATAACGGA 824
Query 806 TAGGAAAACTTATTTCCCAATGCAAGCTTGGTTCTCATTGCATCCTCTGTCTCCAGCAAT 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 TAGGAAAACTTATTTCCCAATGCAAGCTTGGTTCTCATTGCATCCTCTGTCTCCAGCAAT 884
Query 866 AATTGAGGTCAAGGCTTTGCATCATTTCGATTGGTTATCGAAAGGTAAAGTACCCGTTTT 925
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 885 AATTGAGGTCAAGGCTTTGCATCATTTCGATTGGTTATCGAAAGGGAAAGTTCCCGTTTT 944
Query 926 GGAAGCTATGGAGAAAGATCAGAGAGTGAGGTCTCAATTCAGAGGTGGATCATCGGTTAT 985
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 945 GGAAGCTATGGAGAAAGATCAGAGAGTGAGGTCTCAATTCAGAGGCGGATCATCAGTTAT 1004
Query 986 TGTGGCTAATAACAAAGAGAACCCGGTTGTTGTTGCTGCTAAGTTACAAGCTCTCAGCCC 1045
||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1005 TGTGGCTAATAACAACGAGAATCCGGTTGTTGTTGCTGCTAAGTTACAAGCTCTTAGCCC 1064
Query 1046 TAAATACAACTCCTTGATGAATCACATCCGTATTCATCTACCAGAGTTGTTTCCAAGCTT 1105
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 1065 TAAATACAACTCCTTGATGAATCACATCCGTATTCATCTACCAGAGTTGTTCCCGAGCCT 1124
Query 1106 AAACAAGGTTGTGTTTCTAGACGATGACATTGTGATCCAAACTGATCTTTCACCTCTTTG 1165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1125 AAACAAGGTTGTGTTTCTAGACGATGACATTGTGATCCAAACTGATCTTTCACCTCTCTG 1184
Query 1166 GGACATTGACATGAATGGAAAAGTAAATGGAGCAGTGGAAACATGTAGAGGAGAAGACAA 1225
|||||||||||||||||| ||||||||||| ||||| || |||||| |||||||||||||
Sbjct 1185 GGACATTGACATGAATGGGAAAGTAAATGGTGCAGTAGAGACATGTCGAGGAGAAGACAA 1244
Query 1226 GTTTGTGATGTCAAAGAAGTTCAAGAGTTACCTCAACTTCTCGAATCCGACAATTGCCAA 1285
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1245 GTTTGTGATGTCAAAGAAGTTCAAGAGTTACCTCAACTTCTCAAATCCAACAATTGCCAG 1304
Query 1286 AAACTTCAATCCAGAGGAATGTGCATGGGCTTATGGAATGAATGTTTTCGACCTAGCGGC 1345
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1305 AAACTTCGATCCAGAGGAATGTGCTTGGGCTTATGGAATGAATGTTTTCGACCTAGCGGC 1364
Query 1346 TTGGAGGAGGACTAACATAAGCTCCACTTACTATCATTGGCTTGACGAGAACTTAAAATC 1405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 TTGGAGGAGGACTAACATAAGCTCCACTTACTATCATTGGCTTGACGAGAACTTAAAATC 1424
Query 1406 AGACCTGAGTTTGTGGCAGCTGGGAACTTTGCCTCCTGGGCTGATTGCTTTCCACGGTCA 1465
|||||||||||||||||| ||||||||||||||||| ||| |||| ||||||||||| ||
Sbjct 1425 AGACCTGAGTTTGTGGCAACTGGGAACTTTGCCTCCCGGGTTGATAGCTTTCCACGGCCA 1484
Query 1466 TGTCCAAACCATAGATCCGTTCTGGCATATGCTTGGTCTCGGATACCAAGAGACCACGAG 1525
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1485 TGTCCAAACCATAGATCCGTTCTGGCATATGCTTGGTCTCGGATACCAAGAAACCACGAG 1544
Query 1526 CTATGCCGATGCTGAAAGTGCCGCTGTTGTTCATTTCAATGGAAGAGCTAAGCCTTGGCT 1585
|||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1545 CTATGCTGATGCTGAAAGCGCCGCCGTTGTTCATTTCAATGGAAGAGCTAAGCCTTGGCT 1604
Query 1586 GGATATAGCATTTCCTCATCTACGTCCTCTCTGGGCTAAGTATCTTGATTCTTCTGACAG 1645
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1605 GGATATAGCATTTCCTCATCTACGTCCTCTCTGGGCTAAGTATCTTGATTCCTCTGACAG 1664
Query 1646 ATTTATCAAGAGCTGTCACATTAGAGCATCATGATAA-CACAAACCAAGACC-ATTTTCT 1703
|| ||||||||||||||||||||| ||||| ||||| |||||||||| ||| |||||||
Sbjct 1665 GTTCATCAAGAGCTGTCACATTAGAACATCAAGATAATCACAAACCAAAACCCATTTTCT 1724
Query 1704 ACATTGGCACCCAGAGAGGAGATTCACAGATCAAGATATAGGAGCAAACTTTTCTGCAGT 1763
||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 1725 ACACTGGCACCCAGAGAGGAGATTCACAGATCAAAATATAGGATCAAACTTTTCTGCAAT 1784
Query 1764 GGAGTTTTCACTTCTCTACCGGATCATGTTTTGCGGTCTCTCC--T-------GTTTCTA 1814
||||||| |||||||||||||||||||||||||| |||||||| | |||||||
Sbjct 1785 GGAGTTT-CACTTCTCTACCGGATCATGTTTTGCCGTCTCTCCAGTCTCTCATGTTTCTA 1843
Query 1815 ATTTTTT-GTACTTTCAAACTCTTATGGCGAGGAAGTAACCACATTCTATGTATTAATGT 1873
||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1844 ATTTTTTTGTACTTTCAAACTCTTATGGCGAGAAAGTAACCCCATTCTATGTATTAATGT 1903
Query 1874 AAGAACACATAAAGTG 1889
| ||||||||||||||
Sbjct 1904 ACGAACACATAAAGTG 1919
> Ahg495549 jgi|Araly1|495549|fgenesh2_kg.8__1365__AT5G54680.1
Length=1159
Score = 84.2 bits (45), Expect = 3e-15
Identities = 49/51 (96%), Gaps = 0/51 (0%)
Strand=Plus/Minus
Query 1840 GGCGAGGAAGTAACCACATTCTATGTATTAATGTAAGAACACATAAAGTGA 1890
|||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1159 GGCGAGAAAGTAACCCCATTCTATGTATTAATGTAAGAACACATAAAGTGA 1109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71000216680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5