BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54730.1
Length=3017
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495551 jgi|Araly1|495551|fgenesh2_kg.8__1367__AT5G54730.1 4301 0.0
> Ahg495551 jgi|Araly1|495551|fgenesh2_kg.8__1367__AT5G54730.1
Length=2999
Score = 4301 bits (2329), Expect = 0.0
Identities = 2814/3037 (93%), Gaps = 78/3037 (3%)
Strand=Plus/Plus
Query 13 AACAACAGATTTCTAAAACAActctttaa--aggtcttcttcatcttcgctctctcttct 70
|||||||||||||||||||||||| |||| |||||||| | |||||||||||||||||
Sbjct 1 AACAACAGATTTCTAAAACAACTC-TTAATCAGGTCTTC-T--TCTTCGCTCTCTCTTCT 56
Query 71 tcttatcctc--taaatctcttccccttttcttgct-cttAAACGTTACCATAGTCCTAA 127
|||||||||| |||||| |||||||||||||||| ||| |||||| ||| |||| | |
Sbjct 57 TCTTATCCTCAAAAAATCT-TTCCCCTTTTCTTGCTCCTT-AACGTTTCCAAAGTCTTTA 114
Query 128 TCAGATTACTGTTTCCAAAGtcttaa-tctttctttctgggtttttaatctcttctaatt 186
||||||||||| ||| | | |||||| ||||| |||||||||||||||| ||||||||||
Sbjct 115 TCAGATTACTGCTTCGAGACTCTTAATTCTTT-TTTCTGGGTTTTTAATATCTTCTAATT 173
Query 187 cttttcaatttttACAAGaaaaaaaaaaCTCACA-AATCATCGATTCGT-TCTTCTGGGT 244
||||||||||| || | ||| || | ||| | ||||| | ||||||||||
Sbjct 174 CTTTTCAATTTCAAC-ACAAATTTGTTGCTTTTAGGATCGTTGATTC-TATCTTCTGGGT 231
Query 245 TTTTGTAAAAATTCGATCTTTTTGTTTCTTTC-TATTGATTGTGTGTGTTTCTTGCTTCG 303
|||||||||| ||||||||||||||||||||| | |||||| ||||||||||||||||||
Sbjct 232 TTTTGTAAAAGTTCGATCTTTTTGTTTCTTTCTTGTTGATT-TGTGTGTTTCTTGCTTCG 290
Query 304 TGACA-TTTCAGAGTTTGCGTGTATTTTTGTTTCTATTTTTAAAAGATTCTAATCGAATT 362
||||| |||| ||||||||||||| |||||||||||||||| ||||||||||||| ||||
Sbjct 291 TGACATTTTC-GAGTTTGCGTGTA-TTTTGTTTCTATTTTT-AAAGATTCTAATCAAATT 347
Query 363 TGTTCAATTTCGCTCTTAAAAATTGTAAATTTGATCTCTCCCCCGTCTTTCTCGTCGATT 422
|||||||||||| | || ||||||| || ||| |||||| |||||||||||||| |||||
Sbjct 348 TGTTCAATTTCGGT-TTTAAAATTGCAATTTTTATCTCTGCCCCGTCTTTCTCGGCGATT 406
Query 423 CATTTTTGCTTGGATATATCTCAGGCGTCGATATAGAGAATAAAAATCGACACTTTGTTT 482
||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 407 CATTTTT-CTTGGAAATATCTCAGGCGTCGATATAGAGAATAAAAATCGAAACTTTGTTT 465
Query 483 CATTTGGAGGCTAAAGATCAAAGCTTTTTGATAGTGAAGAGCCTCCTCCACCATTATGAA 542
|||||||||| ||||||||||||||||||| |||||||||| | ||||||||||||||
Sbjct 466 CATTTGGAGGTTAAAGATCAAAGCTTTTTGGTAGTGAAGAG--T-CTCCACCATTATGAG 522
Query 543 GAAAAACGGTGACGGTTCTTCTCCCAAGTCGCCAGACGGAGTTGTATCACGATCAGCTCG 602
|||||||||||||||||||||||| |||||||| ||||||||| | ||||||||||||||
Sbjct 523 GAAAAACGGTGACGGTTCTTCTCCGAAGTCGCCGGACGGAGTTATGTCACGATCAGCTCG 582
Query 603 TAGCTCGTTTCGTGCTTTGTCTAATTGCCTTAAGGTGATTTCTTCTGGTGCTTCTACTGT 662
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 GAGTTCGTTTCGTGCTTTGTCTAATTGCCTTAAGGTGATTTCTTCTGGTGCTTCTACTGT 642
Query 663 TGCTCGCTCCGCCGTATCTGCCGCTTCTTCCGCCGTT---GA-----A-TCTCATCACGA 713
|||||||||||||||||| || ||||||||||||||| || | |||||||||||
Sbjct 643 TGCTCGCTCCGCCGTATCAGCTGCTTCTTCCGCCGTTAGGGACGTTGATTCTCATCACGA 702
Query 714 TCAGGTACTATGGGCGGGGTTTGATAATCTACAGAAAGAGGATGGTGATACACGAAGAGT 773
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 703 TCAGGTACTATGGGCGGGGTTTGATAATCTACAGAAAGAAGATGGAGATACTCGAAGAGT 762
Query 774 TCTTCTACTAGCATTTAAGTCTGGATTTCAAGTTTGGGATGTTGAAGATACAGAGAATGT 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 TCTTCTACTAGCATTTAAGTCTGGATTTCAAGTTTGGGATGTTGAAGATACAGAGAATGT 822
Query 834 TCATGTTATAGTTTCTGCACATGATGGACAAGCATTCTTTATGCAAATGCTACTGAATCC 893
||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 823 TCACGTTATAGTTTCTACACATGATGGACAAGCATTCTTTATGCAAATGCTATTGAATCC 882
Query 894 AATAAACTCTGGAGTTTTAGATGATAGGTTTTATAAGAGCCGTCCTCTTTTGGCTGTGTG 953
|||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 883 AATAAAGTCTGGAGCTTTAGATGACAGGTTTTATAAGAGCCGTCCTCTTTTGGCTGTGTG 942
Query 954 TGGTGA---TT---------ATTCAAGTAAAAAGATCAGTTCTGATAACCCCGGAAGTGA 1001
|||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 943 TGGTGATTCTTGGGAAGAACATTCAAGTAAAAAGATCAGTTCTGATAACTCCGGAAGTGA 1002
Query 1002 AACCGTAGCTACTCCTACTAATGTCTATGTCTACTCGTTAAAGTCTCAGTCTTATGTGCA 1061
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 AACCGTGGCTACTCCTACTAATGTCTATGTCTACTCGTTAAAGTCTCAGTCTTATGTGCA 1062
Query 1062 TACGTTGAAATTCCGGGCTACCATCTATTCGGTTAGGTGCTGTTCTCGGATTGTTGCTGT 1121
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1063 TACGCTGAAATTCCGGGCTACCATTTATTCGGTTAGGTGCTGTTCTCGGATTGTTGCTGT 1122
Query 1122 ACTACAAGCAGCTCAGATAGATTGCTTTGATGCTGCAACACTGGAAATGGATTACAGGAT 1181
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 ACAACAAGCAGCTCAGATAGATTGCTTTGATGCTGCAACACTGGAAATGGATTACAGGAT 1182
Query 1182 TGTAACTAACTCCATTGTGTGTGGCTCCTTGGGTGTTGGATATGGCCCTCTTGCTGTTGG 1241
||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1183 TGTCACTAACTCCATTGTGTGTGGCTCCTCGGGTGTTGGATATGGCCCTCTTGCAGTTGG 1242
Query 1242 TCCACGATGGATTGCGTATAGTGGAAGTCGTATTGCTACCTCAAGTTCTGCAATTTTTAC 1301
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1243 TCCAAGATGGATCGCGTATAGTGGAAGTCGTATTGCTACCTCAAGTTCTGCAATTTTCAC 1302
Query 1302 TTCAGAAATTGTCTCACTGTCAACATCATCACCCAGTGTTGCACAATTTGCAAGAGACTC 1361
||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1303 TTCAGAACTTCTCTCACTGT---CATCATCACCCAGTGTTGCACAATTTGCAAGAGACTC 1359
Query 1362 GAGTAAGCAGCTTGCTTCTGGGATAGCAAATCTTGGAGACAAAGGGTAC-AGATCATTGA 1420
||| |||||||| ||||||||||||| |||||||||||||||||||||| || |||||||
Sbjct 1360 GAGCAAGCAGCTCGCTTCTGGGATAGTAAATCTTGGAGACAAAGGGTACAAG-TCATTGA 1418
Query 1421 CTAAATACTGCTCAGAGGTT-TTGCCCAATCCGTATATTCCTGGTTTGAAAGGCATTGGA 1479
|| ||||||| |||||||| || ||||||||||||||||||||||||||| ||||||||
Sbjct 1419 CTCGATACTGCGCAGAGGTTCTT-CCCAATCCGTATATTCCTGGTTTGAAAAGCATTGGA 1477
Query 1480 GTTGGTAATGAAAAAGTAG-CAGATGCAGAGAGCATAGGAATGGTTATTGTCAAAGATAT 1538
||||||||||| || || | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1478 GTTGGTAATGAGAATGT-GCCAGATGCAGAGAGCATAGGAATGGTTATTGTCAAAGATAT 1536
Query 1539 CACAAACAAAAGCGTCATAACGCAGTTTAAGGCACACAAGAGTCCGATTTCAGCTTTGTG 1598
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1537 CACAAACAAAAGCGTCATAACGCAGTTTAAAGCACACAAGAGTCCGATTTCAGCTTTGTG 1596
Query 1599 CTTTGACCAAAGCGGCCTGCTTTTGGTGACTGCTTCGATTCAGGGGCATAATATTAACGT 1658
|||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1597 CTTTGACCCAAGTGGCCTGCTTTTGGTGACTGCTTCGATTCAGGGGCACAATATTAACGT 1656
Query 1659 CTTTAGAATAATGCCAACAATCTCTACAAGCAGAGCTGTGAAGACAACGACTTTTGCCCA 1718
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1657 CTTTAGAATAATGCCAACAATTTCTACAAGCAGAGCTGTGAAGAAAACGACTTTTGCCCA 1716
Query 1719 TCTGTTCAGGCTTCAGCGCGGTTTTACTAATGCGGTGATACAAGACATATGTTTCAGCAA 1778
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1717 TCTGTTCAGGCTTCAGCGCGGTTTTACTAATGCGGTGATACAAGACATCTGTTTCAGC-A 1775
Query 1779 G-GATAGCAATTTGATTGTGGTTGGTTCTTCAAGAGGGACAAGTCATCTT-TTTGAGATT 1836
| ||||||||| | ||||||||| | ||||||||||||||||||||| || ||||||||
Sbjct 1776 GTGATAGCAATCTAATTGTGGTTAGCTCTTCAAGAGGGACAAGTCAT-TTGTTTGAGATA 1834
Query 1837 AATCCTGAGAAAGAGGGGGATGCTCCGGTTCCTATGTCTGCAATCAGTAGGATAAGAAGC 1896
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1835 AATCCTGAGAAAGAGGGGGATTCTCCGGTTCCTATGTCTGCAATCAGTAGGATAAGAAGC 1894
Query 1897 GGAAACAGCAGCGGATGGATTGGGACTGTGAGCGGTGCAGCATCTGCAGCAGCTGGAATG 1956
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1895 GGAAACAGCAGCGGATGGATTGGGACTGTGAGCGATGCAGCTTCTGCAGCAGCTGGAATG 1954
Query 1957 GTTGCAGGCTCGGTTCCGGGTACAGTCACATCCACTTTCTGTTACTGCGATGAAAAGAGT 2016
|||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1955 GTTGGAGGCTCTGTTCCGGGTACAATCACATCCACTTTCTGTTACTGCGATGAAAAGAGT 2014
Query 2017 AACAATAACTACTATGGTTCTGTTGCTGATATGTGCTCCAAGACAAATCTTCTGGTGTTT 2076
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 2015 AACAATAACTACTATGGTTCTGTTGCTGATATGTGCTCCAAGACGAATCTTCTGGTTTTT 2074
Query 2077 GCTCCTTCTGGATGTATGACACAGTATGCGTTACGGGAACAT-CAGGTTGGTGTTGGTCA 2135
||||||||||||||||||||||||||||| ||||||||| || | || ||||| ||||||
Sbjct 2075 GCTCCTTCTGGATGTATGACACAGTATGCATTACGGGAAAATGC-GGCTGGTGCTGGTCA 2133
Query 2136 TGAGACTGCTGCAATGACGGGGTTTGA-TTCTGAGTCAGGTCTAGAGACAGAAGGAAAAT 2194
|||||||||||| |||| ||||||||| || |||||||||| ||||||| ||||||||||
Sbjct 2134 TGAGACTGCTGCGATGATGGGGTTTGACTT-TGAGTCAGGTATAGAGACTGAAGGAAAAT 2192
Query 2195 TAGCGGTAGATCCAATAAGAAGGTGGTCCATGATCCAAAACCAATCTAGAAGAGAGACGC 2254
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 2193 TAGCGGTAGATCCAATAAGAAGGTGGTCCATAATCCAAAACCGATCTAGAAGAGAGACGC 2252
Query 2255 ATGACCCCCACAGTGACATATATGGAGGTGGAACATCAGTGGATTCTAAAAGTAAAGTGT 2314
| || | ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2253 AGGATCACCACAGTGACATATATGGAGGTGGAACATCAGTGGATTCTAAAAGCAAAGTGT 2312
Query 2315 TTCCAGAGGTTGTTAGAAAACAAAGTGTTGAGGAAGCTTGGAAAGTATCTAAGAAAGGAA 2374
|||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 2313 TTCCGGAGGTTGTTAGAAAACAGAGTGTTGAGGAAGCTTGGAAAGTAACTAAGAAAGGAA 2372
Query 2375 CTACCCGTGTGG-TGGATAAGCGTCATTTGTACATATATGAAGCAGAACAACAGCAAACG 2433
| |||| ||||| || |||| |||||||||||||||| |||||||||||| |||||||
Sbjct 2373 CGACCCATGTGGATG-ATAATCGTCATTTGTACATATTTGAAGCAGAACA---GCAAACG 2428
Query 2434 CATCTGCCGACTCAGCTACCCTTATGGGCAAGGCGAAAGTTTAGGTTTCAAGAATTGGTA 2493
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
Sbjct 2429 CATCTGCCGACTCAGCTACCGTTATGGGCAAGGCGAAAGTTTAGGTTTCAAAAATTGGCA 2488
Query 2494 TTGAATCGGGGTGAAGAGATTAGTGGTGGAGGTGGAAGGGAGATGGAGATTGAAGGAATC 2553
||||||||||||||||| |||||||||||||| || || ||||||||||||||||||||
Sbjct 2489 TTGAATCGGGGTGAAGATATTAGTGGTGGAGGAGG--GG-AGATGGAGATTGAAGGAATC 2545
Query 2554 CAAACTCGAACTATTGAAGCAAGAACAAGAGATTTGGTTCCAGTCTGGGGTTATCTCCAA 2613
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2546 CAAACTCGAACAATTGAAGCAAGAACAAGAGATTTGGTTCCAGTCTGGGGTTATCTCCAA 2605
Query 2614 TCTCCAAGGTCTCAGCAAGTGATAAACGAATCAATACAGAGTCCAAGTACCACTACACAA 2673
|| ||||| || || ||||||| |||||||||||| ||||||||||||||||||||| ||
Sbjct 2606 TCACCAAGATCCCAACAAGTGACAAACGAATCAATGCAGAGTCCAAGTACCACTACAGAA 2665
Query 2674 GATGACAAAGTGGCTACTCTGGAGGGTCATGGAACAGAGACTGATCTCGGTGCTGTACAT 2733
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2666 GATGACAAAGTGGCTCCTCTGGAGGGTCATGGAACAGAGACTGATCTCGGGGCTGTACAT 2725
Query 2734 AGCGAAGAACAGACACAAAGCGAGCCTGTAGATAAAGAAGGTATTGCAGAGGAGAAGAAT 2793
|| |||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 2726 AGTGAAGAAGAGACACAAAGCGAGTCTGTAGATAAAGAAGGTATTGCAGAGGAAAAGAAT 2785
Query 2794 CACAGTGAAGATGAGGATGAAGAGCAAGTGGATTAGAAGATTGGTTTATTTTTTCTCACA 2853
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2786 CACAGTGAAGATGAGGATGAAGAGCAAGTGGATTAGAAGATTGGTTTATTTTTT-TCACA 2844
Query 2854 CATACTCGACTTCAACAACAGAATAGCaaaaaaaTAACTCTGGAAAATTGTATAGAAAAG 2913
|| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2845 CAAACTCGGCTTCAACAACAGAATAACAAAAAAATAACTCTGGAAAATTGTATAGAAAAG 2904
Query 2914 AAAGAGGAAAATTGACATATCTTTTAGATGTAAATAGCTTTAGTACTTTTTCTTCttttt 2973
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2905 AAAAAGGAAAATTGACATATCTTTTAGATGTAAATAGCTTTAGTACTTTTTCTTCTTTTT 2964
Query 2974 tttttACAGAATATTATTAGCCCATTGATTCATGAAC 3010
|| ||| ||||||||||||||||||||||||||||
Sbjct 2965 TT---ACAAAATATTATTAGCCCATTGATTCATGAAC 2998
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113927922795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5