BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G54740.1 Length=830 Score E Sequences producing significant alignments: (Bits) Value Ahg495552 jgi|Araly1|495552|fgenesh2_kg.8__1368__AT5G54740.1 1099 0.0 > Ahg495552 jgi|Araly1|495552|fgenesh2_kg.8__1368__AT5G54740.1 Length=825 Score = 1099 bits (595), Expect = 0.0 Identities = 763/840 (91%), Gaps = 28/840 (3%) Strand=Plus/Plus Query 4 CATCCATCACTCGCCAAAAACCTTGAAA-CCTTTAA-AAAATCGAAACTATGGCTAAGCT 61 ||||| |||||| ||||| ||| | ||| |||| || |||||| |||| ||||||||||| Sbjct 1 CATCCGTCACTCACCAAATACC-TCAAATCCTTAAACAAAATC-AAACCATGGCTAAGCT 58 Query 62 CATTCTCGTTTTCGCAACTCTTGCCCTCTTCATCCTCCTAGCCAACGCATCCATCTACCG 121 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 59 TATTCTCGTTTTCGCAACTCTTGCTCTCTTCATCCTCCTAGCCAACGCATCCATCTACCG 118 Query 122 CACAGTGGTGGAGTTCGAGGAAGATGATGACGTGAGCAACCCACAACAAGGTAAGTGCCA 181 | |||||||||||||||| ||||| || ||||| |||||||||||||||| ||||||||| Sbjct 119 CGCAGTGGTGGAGTTCGATGAAGAAGACGACGTTAGCAACCCACAACAAGATAAGTGCCA 178 Query 182 GAGGGAGTTTATGAAGCATCAGCAACTAAGAGGTTGCAAGCAATGGATCCGCAAGAGAGC 241 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 179 GAGGGAGTTTATGCAGCATCAGCAACTAAGAGGTTGCAAGCAATGGATCCGCAAGCGAGC 238 Query 242 TCAACAAGGAAGAATCGGATACGAAGCTGATGACTTTGAGCTCACTCTTGATGTCGATCT 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 239 TCAACAAGGAAGAATCGGATACGAAGCTGATGACTTTGAGCTCACTCTTGATGTTGATTT 298 Query 302 TGAGGACGATGAGAACCCAATGGGGCCTCAACAACAGTCATC----TCTTAAAATGTGTT 357 |||||||||||||||||||| ||||||||||| ||| | ||||| |||||||| Sbjct 299 TGAGGACGATGAGAACCCAACA---CCTCAACAACA-TCAACCAGCTCTTAGAATGTGTT 354 Query 358 GTAATGAATTAAGGCAAGTGGACAAGATGTGTGTGTGTCCTACACTGAAAAAGGCGGCTC 417 | ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 355 GCAATGAGTTAAGACAAGTGGACAAGATGTGTGTGTGTCCTACACTGAAAAAGGCTGCTC 414 Query 418 AACAAGTCAGATTCCAGGGAATGCATGGACAGCAACAGGTGCAACATGTGTTTCAGACTG 477 ||||||| ||||||||||||||||||||||| |||||| || |||||||||||||||||| Sbjct 415 AACAAGTTAGATTCCAGGGAATGCATGGACAACAACAGATGAAACATGTGTTTCAGACTG 474 Query 478 CTAAGAACTTGCCTAACG-TTTGCAAAATCCCTACCGTTGGATCCTGCCAGTTCAAGGCA 536 || ||||||||||||| | |||||||||||||| | |||| ||||||||||||||||||| Sbjct 475 CTCAGAACTTGCCTAA-GATTTGCAAAATCCCTGCAGTTGAATCCTGCCAGTTCAAGGCA 533 Query 537 TCTCCTTACTAGGACCATGAAGAGGACCAAACTATAAAAGCACACACGTACACA--TGGT 594 ||||||||||| || |||||||||||||| ||||||||| | |||||||||||| |||| Sbjct 534 TCTCCTTACTAAGATCATGAAGAGGACCAGACTATAAAAACGCACACGTACACACATGGT 593 Query 595 GGTTTTGTTAATGATAATAAAAA--GTCTCTCTCTTGTGGCGTGTTCGTGTTTGTATAGT 652 | ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || Sbjct 594 GATTTTGTTAATGATAATAAAAAAAGTCTCACTCTTGTGGCGTGTTCGTGTTTGTATCGT 653 Query 653 AGATAAATGTTTGTACTGTATGAGTTA-GAGTCTTAGTGGCAATATTACACCTTCTAGTG 711 ||||| |||||||||||||| |||||| |||||||||||||||||||||||||| ||||| Sbjct 654 AGATATATGTTTGTACTGTACGAGTTAAGAGTCTTAGTGGCAATATTACACCTTGTAGTG 713 Query 712 TAATGTAACTTGCCCTACCCCCTTAAATAAAAGA-TGTTCTTGGGTATTCAAAAATCTTT 770 |||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||| Sbjct 714 TAATGTAACTTGCCCTACCCCCTTAAATAAAAGAGTGTTCTTGGGTACTCAAAA-TCTTT 772 Query 771 AGCATCACACTCACACTCTCTTAAATCTCATGTTTGTGTTCTAATAAATTATTGAGAATT 830 | | ||| | ||||||||| || ||||||||||||||| ||| ||||||||||||||| Sbjct 773 A--A-CAC-C--ACACTCTCT-AAGTCTCATGTTTGTGTTTTAAGAAATTATTGAGAATT 825 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30688948185 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5