BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54740.1
Length=830
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495552 jgi|Araly1|495552|fgenesh2_kg.8__1368__AT5G54740.1 1099 0.0
> Ahg495552 jgi|Araly1|495552|fgenesh2_kg.8__1368__AT5G54740.1
Length=825
Score = 1099 bits (595), Expect = 0.0
Identities = 763/840 (91%), Gaps = 28/840 (3%)
Strand=Plus/Plus
Query 4 CATCCATCACTCGCCAAAAACCTTGAAA-CCTTTAA-AAAATCGAAACTATGGCTAAGCT 61
||||| |||||| ||||| ||| | ||| |||| || |||||| |||| |||||||||||
Sbjct 1 CATCCGTCACTCACCAAATACC-TCAAATCCTTAAACAAAATC-AAACCATGGCTAAGCT 58
Query 62 CATTCTCGTTTTCGCAACTCTTGCCCTCTTCATCCTCCTAGCCAACGCATCCATCTACCG 121
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 59 TATTCTCGTTTTCGCAACTCTTGCTCTCTTCATCCTCCTAGCCAACGCATCCATCTACCG 118
Query 122 CACAGTGGTGGAGTTCGAGGAAGATGATGACGTGAGCAACCCACAACAAGGTAAGTGCCA 181
| |||||||||||||||| ||||| || ||||| |||||||||||||||| |||||||||
Sbjct 119 CGCAGTGGTGGAGTTCGATGAAGAAGACGACGTTAGCAACCCACAACAAGATAAGTGCCA 178
Query 182 GAGGGAGTTTATGAAGCATCAGCAACTAAGAGGTTGCAAGCAATGGATCCGCAAGAGAGC 241
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 179 GAGGGAGTTTATGCAGCATCAGCAACTAAGAGGTTGCAAGCAATGGATCCGCAAGCGAGC 238
Query 242 TCAACAAGGAAGAATCGGATACGAAGCTGATGACTTTGAGCTCACTCTTGATGTCGATCT 301
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 239 TCAACAAGGAAGAATCGGATACGAAGCTGATGACTTTGAGCTCACTCTTGATGTTGATTT 298
Query 302 TGAGGACGATGAGAACCCAATGGGGCCTCAACAACAGTCATC----TCTTAAAATGTGTT 357
|||||||||||||||||||| ||||||||||| ||| | ||||| ||||||||
Sbjct 299 TGAGGACGATGAGAACCCAACA---CCTCAACAACA-TCAACCAGCTCTTAGAATGTGTT 354
Query 358 GTAATGAATTAAGGCAAGTGGACAAGATGTGTGTGTGTCCTACACTGAAAAAGGCGGCTC 417
| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 355 GCAATGAGTTAAGACAAGTGGACAAGATGTGTGTGTGTCCTACACTGAAAAAGGCTGCTC 414
Query 418 AACAAGTCAGATTCCAGGGAATGCATGGACAGCAACAGGTGCAACATGTGTTTCAGACTG 477
||||||| ||||||||||||||||||||||| |||||| || ||||||||||||||||||
Sbjct 415 AACAAGTTAGATTCCAGGGAATGCATGGACAACAACAGATGAAACATGTGTTTCAGACTG 474
Query 478 CTAAGAACTTGCCTAACG-TTTGCAAAATCCCTACCGTTGGATCCTGCCAGTTCAAGGCA 536
|| ||||||||||||| | |||||||||||||| | |||| |||||||||||||||||||
Sbjct 475 CTCAGAACTTGCCTAA-GATTTGCAAAATCCCTGCAGTTGAATCCTGCCAGTTCAAGGCA 533
Query 537 TCTCCTTACTAGGACCATGAAGAGGACCAAACTATAAAAGCACACACGTACACA--TGGT 594
||||||||||| || |||||||||||||| ||||||||| | |||||||||||| ||||
Sbjct 534 TCTCCTTACTAAGATCATGAAGAGGACCAGACTATAAAAACGCACACGTACACACATGGT 593
Query 595 GGTTTTGTTAATGATAATAAAAA--GTCTCTCTCTTGTGGCGTGTTCGTGTTTGTATAGT 652
| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 594 GATTTTGTTAATGATAATAAAAAAAGTCTCACTCTTGTGGCGTGTTCGTGTTTGTATCGT 653
Query 653 AGATAAATGTTTGTACTGTATGAGTTA-GAGTCTTAGTGGCAATATTACACCTTCTAGTG 711
||||| |||||||||||||| |||||| |||||||||||||||||||||||||| |||||
Sbjct 654 AGATATATGTTTGTACTGTACGAGTTAAGAGTCTTAGTGGCAATATTACACCTTGTAGTG 713
Query 712 TAATGTAACTTGCCCTACCCCCTTAAATAAAAGA-TGTTCTTGGGTATTCAAAAATCTTT 770
|||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||
Sbjct 714 TAATGTAACTTGCCCTACCCCCTTAAATAAAAGAGTGTTCTTGGGTACTCAAAA-TCTTT 772
Query 771 AGCATCACACTCACACTCTCTTAAATCTCATGTTTGTGTTCTAATAAATTATTGAGAATT 830
| | ||| | ||||||||| || ||||||||||||||| ||| |||||||||||||||
Sbjct 773 A--A-CAC-C--ACACTCTCT-AAGTCTCATGTTTGTGTTTTAAGAAATTATTGAGAATT 825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30688948185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5