BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G54750.2

Length=965
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg357730 jgi|Araly1|357730|fgenesh1_pg.C_scaffold_8001517           684    0.0  


> Ahg357730 jgi|Araly1|357730|fgenesh1_pg.C_scaffold_8001517
Length=561

 Score =  684 bits (370),  Expect = 0.0
 Identities = 394/406 (97%), Gaps = 0/406 (0%)
 Strand=Plus/Plus

Query  316  GGGATACAACATTGGAATCCGACTTATCGATGAGTTTCTAGCTAAATCTGGTGTTTCCAG  375
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  156  GGGATACAACATTGGAATCCGACTTATCGATGAGTTTCTAGCTAAATCTGGTGTTTCCAG  215

Query  376  ATGCGTTGACTTTAAGGAAACTGCTGAAATGATTGCCAAGGTGGGTTTCAAGATGTTCTT  435
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  216  ATGCGTTGACTTTAAGGAAACTGCTGAAATGATTGCCAAGGTGGGTTTCAAGATGTTCTT  275

Query  436  AGGAGTCACTGCATCAGTGACAAGCTGGGACTCGGACGGGACTTGCTGCAGTATAATCTT  495
            ||| ||||||||||||||||||||||||||| | || || ||||||||||||||||||||
Sbjct  276  AGGGGTCACTGCATCAGTGACAAGCTGGGACGCAGATGGTACTTGCTGCAGTATAATCTT  335

Query  496  AGAGGACAATCCCCTAGTTGATTTCGTCGAGCTTCCCGATACTTGCCAAGGTCTTTACTA  555
             ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  336  GGAGGACAATCCGCTAGTTGATTTCGTGGAGCTTCCCGATACTTGCCAAGGTCTTTACTA  395

Query  556  CTGCAATGTCTTAAGTGGAGTCATTAGAGGAGCTTTGGAAATGGTCTCAATGAAGACAGA  615
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  396  CTGCAATGTCTTAAGTGGAGTCATTAGAGGAGCTTTGGAAATGGTCTCGATGAAGACAGA  455

Query  616  AGTGACATGGACGCGTGATGTTCTTCGAGGAGATGATGCTTATGAGTTGCAAGTAAAGCT  675
            |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct  456  AGTGACATGGACGCGTGATGTTCTTCGAGGGGATGATGCTTACGAGTTGCAAGTGAAGCT  515

Query  676  ACTGAAACAAGTCGCTGAGGAATATCCTTACAAGGATGATGAATAA  721
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  516  ACTGAAACAAGTCGCTGAGGAATATCCTTACAAGGATGATGAATAA  561


 Score =  267 bits (144),  Expect = 1e-70
 Identities = 152/156 (97%), Gaps = 0/156 (0%)
 Strand=Plus/Plus

Query  122  ATGGCTCCGGTTGGTCCTCGATCCGGTGATGCGATCTTCTCTAGCATTGATCGTGTGAAT  181
            ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCCCCGGTTGGTCCTCGTTCCGGTGATGCGATCTTCTCTAGCATTGATCGTGTGAAT  60

Query  182  GCGGAGTTGTTCACGTTGACGTATGGTGCTATTGTGCGTCAATTGCTTACTGACCTGGAA  241
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  61   GCGGAGTTGTTCACGTTGACGTATGGTGCAATTGTGCGTCAATTGCTTACTGACCTGGAA  120

Query  242  GAAGTAGAGGAAGTTAACAAACAGCTTGATCAAATG  277
            ||||| ||||||||||||||||||||||||||||||
Sbjct  121  GAAGTTGAGGAAGTTAACAAACAGCTTGATCAAATG  156



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35835541980


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5