BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54760.1
Length=763
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495556 jgi|Araly1|495556|fgenesh2_kg.8__1372__AT5G54760.1 917 0.0
Ahg474560 jgi|Araly1|474560|fgenesh2_kg.1__4514__AT1G54290.1 366 1e-100
> Ahg495556 jgi|Araly1|495556|fgenesh2_kg.8__1372__AT5G54760.1
Length=637
Score = 917 bits (496), Expect = 0.0
Identities = 604/650 (93%), Gaps = 31/650 (5%)
Strand=Plus/Plus
Query 3 TATTTTCTCACCGTCGAGAAAACAAAACACAAGTTGCAGACTTTATCCAAATTTAGGGTT 62
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 2 TATTTTCTCACCGTCGAGAGAACAAAACGCAAGTTGCAGACTTTATCCAAATTTAGGG-T 60
Query 63 TTCTCtttttttCTTACTTAGTTATCATCAGATCTTCA-AAACCCCAA---AATTTGCAA 118
|| || | || || ||||||||||||||| | ||||||||| ||||||||
Sbjct 61 TT-TC------T-TT--TT--TTATCATCAGATCTT-AGAAACCCCAATTTTATTTGCAA 107
Query 119 ATCAGATCTCAGCTTCCCGGTTAGTACTACCCTCAAATCAACTAAGTTTCATGTCTGAAC 178
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 108 AACAGATCTCAGCTTCCCGGTTAGTTTTACCCTCAAATCAACTAAGTTTCATGTCTGAAC 167
Query 179 TTGACTCCCAGGTTCCCACTGCCTTTGATCCGTTTGCTGATGCGAATGTTGAGGACTCAG 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 TTGACTCCCAGGTTCCCACTGCCTTTGATCCGTTTGCTGATGCGAATGTTGAGGACTCAG 227
Query 239 GTGCCGGAACAAAAGAATACGTTCATATCCGTGTCCAGCAGCGAAATGGTAGGAAAAGCT 298
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 GTGCCGGAACAAAGGAGTACGTTCATATCCGTGTCCAGCAGCGAAATGGTAGGAAAAGCT 287
Query 299 TGACAACCGTCCAGGGCCTGAAGAAAGAGTACAGCTATACCAAGATACTTAAGGACCTCA 358
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 288 TGACAACCGTCCAGGGCCTGAAGAAAGAGTACAGCTATACCAAGATACTTAAAGACCTCA 347
Query 359 AGAAAGAGTTTTGCTGCAACGGCACTGTGGTTCAGGATTCAGAACTCGGACAGGTTATAC 418
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 348 AGAAAGAGTTTTGCTGCAACGGCACTGTGGTTCAGGATTCAGAACTTGGACAGGTCATAC 407
Query 419 AGCTTCAAGGTGACCAACGTAAGAACGTCTCCACATTCCTTGTCCAGGCTGGTTTGGTGA 478
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 408 AGCTTCAAGGTGACCAGCGTAAGAACGTCTCCACATTCCTTGTTCAGGCTGGTTTGGTGA 467
Query 479 AGAAGGATAACATCAAGATCCATGGTTTCTAAGCTATCTAGTGGATCATATTATTAATAA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 468 AGAAGGATAACATCAAGATCCATGGTTTCTAAGCTATCTAGTGGATCATATTAATAATAA 527
Query 539 AACCATATC-TT-T-TTCTTTCATCTCTTGTTGCGAATTTCGGGTTTGATTC-A-T---C 590
||||||||| || | ||||||||||||||||||||||||||||||||||||| | | |
Sbjct 528 AACCATATCATTCTCTTCTTTCATCTCTTGTTGCGAATTTCGGGTTTGATTCGAGTAGAC 587
Query 591 -A--A-AATCGTCTTCTTCCTAGTGTTCTTC-TTCTGTTTGGTATTCGAA 635
| | |||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 588 GATCAGAATCGTCTGCTTCCTAGTGTTCTTCATTCTGTTTGGTATTCGAA 637
> Ahg474560 jgi|Araly1|474560|fgenesh2_kg.1__4514__AT1G54290.1
Length=749
Score = 366 bits (198), Expect = 1e-100
Identities = 312/367 (85%), Gaps = 8/367 (2%)
Strand=Plus/Plus
Query 158 AAC-TAAGTTTCATGTCTGAACTTG-ACTCCCAGGTTCCCACTGCCTTTGATCCGTTTGC 215
||| |||| ||||||||||| |||| | | || || |||||||||||||||||||||||
Sbjct 206 AACTTAAGGTTCATGTCTGATCTTGAAGT-TCAAGTCCCCACTGCCTTTGATCCGTTTGC 264
Query 216 TGATGCGAATGTTGAGGACTCAGGTGCCGGAACAAAAGAATACGTTCATATCCGTGTCCA 275
|||||| |||| ||||||||| || || |||||||| |||||||| || || ||||| ||
Sbjct 265 TGATGCAAATGCTGAGGACTCTGGGGCGGGAACAAAGGAATACGTGCACATTCGTGTTCA 324
Query 276 GCAGCGAAATGGTAGGAAAAGCTTGACAACCGTCCAGGGCCTGAAGAAAGAGTACAGCTA 335
|||||| |||||||| |||||||||||||| || ||||| || ||||||||||| |||||
Sbjct 325 GCAGCGTAATGGTAGAAAAAGCTTGACAACTGTTCAGGGACTTAAGAAAGAGTATAGCTA 384
Query 336 TACCAAGATACTTAAGGACCTCAAGAAAGAGTTTTGCTGCAACGGCACTGTGGTTCAGGA 395
|| |||||||||||| ||||| |||||||| || |||||||| |||||||| || |||||
Sbjct 385 TAGCAAGATACTTAAAGACCTTAAGAAAGAATTCTGCTGCAATGGCACTGTTGTCCAGGA 444
Query 396 TTCAGAACTCGGACAGGTTATACAGCTTCAAGGTGACCA-ACGTAAGAACGTCTCCACAT 454
|| ||| | ||||||||||| ||||||||||| || || | | ||||||||||| || |
Sbjct 445 CTCTGAATTAGGACAGGTTATTCAGCTTCAAGGCGATCAGAGG-AAGAACGTCTCTACGT 503
Query 455 TCCTTGTCCAGGCTGGT-TTGGTGAAGAAGGATAACATCAAGATCCATGGTTTCTAAGCT 513
||||||| |||||||| ||| ||||||||||||||||||| ||||||||||| | |||
Sbjct 504 TCCTTGTTCAGGCTGGGCTTG-TGAAGAAGGATAACATCAAAATCCATGGTTTTTGAGCA 562
Query 514 AT-CTAG 519
|| ||||
Sbjct 563 ATTCTAG 569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28134712746
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5