BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54770.1
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950127 jgi|Araly1|950127|scaffold_802014.1 1666 0.0
> Ahg950127 jgi|Araly1|950127|scaffold_802014.1
Length=1099
Score = 1666 bits (902), Expect = 0.0
Identities = 1041/1106 (94%), Gaps = 17/1106 (2%)
Strand=Plus/Plus
Query 18 ACTCGAACCCTAAAGAAAAACAAAAATGGCTGCCATAGCTTCTACTCTCTCTCTTTCTTC 77
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACTCGAACCCTAAAG----A-AAAAATGGCTGCCATAGCTTCTACTCTCTCTCTTTCTTC 55
Query 78 AACCAAACCTCAGAGACTTTTCGATTCTTCCTTCCATGGCTCAGCCATCTCCGCAGCTCC 137
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 56 AACCAAACCTCAAAGACTTTTCGATTCTTCCTTCCATGGCTCATCCATCTCCGCAGCTCC 115
Query 138 TATCTCCATCGGTCTCAAACCACGATCT-------T--TCTCCGTTCGCGCCACAACCGC 188
|||||||||||| |||||| |||||||| | |||| |||||||||||||||||
Sbjct 116 TATCTCCATCGGACTCAAATCACGATCTGGAAGCGTAGTCTCTGTTCGCGCCACAACCGC 175
Query 189 TGGTTACGACTTGAACGCTTTCACGTTCGACCCGATCAAGGAATCGATCGTGTCACGTGA 248
|||||| || |||||||||||||| || || ||||||||||||||||||||||| |||||
Sbjct 176 TGGTTATGATTTGAACGCTTTCACTTTTGATCCGATCAAGGAATCGATCGTGTCTCGTGA 235
Query 249 GATGACGAGAAGGTACATGACGGATATGATCACTTATGCTGAGACTGATGTCGTCGTCGT 308
|||||| |||||||||||||| || ||||||||||| |||||||||||||| ||||||||
Sbjct 236 GATGACTAGAAGGTACATGACTGACATGATCACTTACGCTGAGACTGATGTTGTCGTCGT 295
Query 309 TGGTGCTGGATCTGCTGGTTTATC-TGCTGCTTATGAGATCAGTAAGAACCCTAATGTTC 367
||||||||||||||||||||| || || |||||||||||| |||||||||||||||||||
Sbjct 296 TGGTGCTGGATCTGCTGGTTTGTCTTG-TGCTTATGAGATTAGTAAGAACCCTAATGTTC 354
Query 368 AAGTTGCCATTATTGAGCAATCTGTTAGTCCTGGTGGTGGTGCTTGGCTCGGTGGTCAGC 427
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 AAGTTGCTATTATTGAGCAATCTGTTAGTCCTGGTGGTGGTGCTTGGCTCGGTGGTCAGC 414
Query 428 TTTTCTCCGCCATGATTGTTCGCAAACCAGCTCACTTGTTCCTTGACGAGATTGGTGTGG 487
|||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||
Sbjct 415 TTTTCTCCGCCATGATTGTTCGCAAACCAGCTCATTTGTTTTTTGATGAGATTGGTGTGG 474
Query 488 CTTACGATGAGCAAGACACCTACGTTGTGGTTAAGCACGCGGCTCTGTTCACATCAACCA 547
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||
Sbjct 475 CTTACGATGAGCAAGACAACTACGTTGTGGTTAAGCACGCGGCTCTGTTTACATCGACCA 534
Query 548 TCATGAGCAAGCTTTTGGCTCGTCCTAATGTGAAGCTCTTCAACGCTGTGGCTGCTGAGG 607
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 535 TCATGAGCAAGCTTTTGGCTCGTCCTAACGTGAAGCTCTTCAACGCTGTGGCGGCTGAGG 594
Query 608 ATTTGATTGTGAAAGGAAACAGAGTTGGTGGTGTGGTGACTAACTGGGCTCTTGTGGCTC 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 ATTTGATTGTGAAAGGAAACAGAGTTGGTGGTGTGGTGACTAACTGGGCTCTTGTGGCTC 654
Query 668 AGAACCACCACACACAATCGTGTATGGACCCTAATGTTATGGAAGCGAAGATTGTGGTTA 727
||||||| ||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||
Sbjct 655 AGAACCATGACACACAGTCGTGCATGGACCCCAATGTTATGGAGGCGAAGATTGTTGTTA 714
Query 728 GCTCTTGTGGTCATGATGGTCCTTTTGGAGCTACTGGTGTTAAGAGGTTGAAGAGTATTG 787
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 715 GCTCGTGTGGTCATGATGGTCCCTTTGGAGCTACTGGTGTTAAGAGGTTGAAGAGTATTG 774
Query 788 GGATGATTGATCATGTTCCTGGGATGAAAGCTTTGGACATGAACACTGCTGAGGACGCTA 847
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 775 GGATGATTGATCATGTTCCTGGGATGAAGGCTTTGGACATGAACACTGCTGAAGACGCTA 834
Query 848 TTGTGAGGTTGACCAGAGAGGTTGTTCCTGGTATGATTGTTACCGGTATGGAAGTTGCTG 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 TTGTGAGGTTGACCAGAGAGGTTGTTCCTGGTATGATTGTTACCGGTATGGAAGTTGCTG 894
Query 908 AGATCGATGGTGCACCGAGAATGGGACCAACTTTTGGTGCTATGATGATATCGGGACAAA 967
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 895 AGATCGATGGTGCACCGAGAATGGGACCGACATTTGGTGCTATGATGATATCGGGACAAA 954
Query 968 AGGCGGGACAACTTGCTCTTAAGGCTTTGGGGCTACCGAATGCTATTGACGGAACTCTCG 1027
|||| ||||||||||||||||||||||||||||| || ||||||||||| |||||| ||
Sbjct 955 AGGCCGGACAACTTGCTCTTAAGGCTTTGGGGCTGCCAAATGCTATTGATGGAACTAACG 1014
Query 1028 TTGGAAACCTAAGCCCGGAGCTGGTCTTAGCCGCAGCAGATTCAGCTGAAACCGTAGATG 1087
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1015 TTGGAAACCTAAGCCCGGAGCTGGTCTTAGCCGCAGCCGATTCAGCTGAAACCGTAGATG 1074
Query 1088 CTTAAAATCAAAAGGTTTTAACGTTA 1113
|||||||||||||||||||||| |||
Sbjct 1075 CTTAAAATCAAAAGGTTTTAAC-TTA 1099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57401999215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5