BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54780.1
Length=1719
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495559 jgi|Araly1|495559|fgenesh2_kg.8__1375__AT5G54780.1 2344 0.0
> Ahg495559 jgi|Araly1|495559|fgenesh2_kg.8__1375__AT5G54780.1
Length=1747
Score = 2344 bits (1269), Expect = 0.0
Identities = 1401/1463 (96%), Gaps = 16/1463 (1%)
Strand=Plus/Plus
Query 9 AAAGAATTGATCTTTTGAGAGGGTTCCAGttttttttCTCTTTC-GTCTTCTCCATTCTT 67
||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| ||||
Sbjct 2 AAAGAATTGATCTTTTGAGAGGGTTCCAG-TTTTTTT-TCTTTCTTTCTTCTCCAATCTT 59
Query 68 GTTTGTAG----aaaaaaaCCCattttttatttggatttttcatttgattttcccgggaa 123
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 60 GTTTGTAGAAAAAAAAAAACCCATTTTTTGTTTGGATTTTTCATTTGATTTTCCCGGGAA 119
Query 124 agttgtaattttta-tt-ttttt---gAGGGAGATTGAAAAAGTTCGAT-AAAAATGTGG 177
|||| | ||||||| || ||||| ||||| |||||||||| || | | ||||||||||
Sbjct 120 AGTTTTCATTTTTATTTGTTTTTGGGGAGGG-GATTGAAAAAATTAGCTAAAAAATGTGG 178
Query 178 GGAGCCG-CCGCAGAACCAGCAGATTCTTATTACCTGATTCGTCCTGAGTGCACTGATGT 236
|||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 179 GGAG-CGTTCGCAGAACCAGCAGATTCTTATTACCAGATTCGTCCTGAGTGCACTGATGT 237
Query 237 CCCCAATACCAAATTCAAGATCAAACCTGGTAAAACTCTAAGTGTAAGAAAATGGCAAGC 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CCCCAATACCAAATTCAAGATCAAACCTGGTAAAACTCTAAGTGTAAGAAAATGGCAAGC 297
Query 297 TGCATTTACAACAGAAGGATTCCTTGATATTGGCAAGACTCTAAGTCGAATCCAACGAGG 356
|||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||
Sbjct 298 TGCATTTACAACAGAAGGGTTCCTCGATATTGGCAAGACTCTAAGTAGAATCCAACGAGG 357
Query 357 GGGGATCCATCCATCAATTAGAGGAGAAGTCTGGGAATTCTTACTTGGTTGTTATGATCC 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GGGGATCCATCCATCAATTAGAGGAGAAGTCTGGGAATTCTTACTTGGTTGTTATGATCC 417
Query 417 AAAAAGCACATTTGAAGAAAGAGAGCAAATCCGACAACGTAGAAGATTGCAGTATGCTTC 476
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AAAGAGCACATTTGAAGAAAGAGAGCAAATCCGACAACGTAGAAGATTGCAGTATGCTTC 477
Query 477 TTGGAAGGAGGAATGTAAACAAATGTTTCCCGTCATCGGAAGTGGTGGATTCATTACTGC 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 478 TTGGAAGGAGGAATGTAAACAAATGTTTCCCGTCATCGGAAGTGGTGGATTCATTACCGC 537
Query 537 ACCTGTAATTACCAACAAGGGTGAACCCATTTACGATCCTATTGTACTACAAGAAACAAA 596
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 538 ACCTGTAATTACCAACAAGGGTGAACCCATTTACGATCCTATTGTTCTACAAGAAACAAA 597
Query 597 TTTAGGTGCAAATGGTTCAGATTTCTTCAAAGATCTTGCAAGCCGTGGACCTTTGGACCA 656
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
Sbjct 598 TTTAGGTGCAAATGGTTCGGATTTCTTCAAAGATCTTGCAAGCCGCGGACCTTTGGACAA 657
Query 657 GAAAGTTATTCAATGGCTGTTAACACTTCACCAAATAGGTCTTGATGTAAATCGCACAGA 716
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 658 GAAAGTTATTCAATGGCTGTTAACACTTCACCAAATAGGTCTTGATGTAAACCGTACAGA 717
Query 717 TAGGACTTTGGTATTCTATGAGAAAAAGGAGAACTTGTCTAAGCTTTGGGACATTCTAGC 776
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 718 TAGGACTTTGGTATTCTATGAGAAAAAGGAGAATTTGTCTAAGCTTTGGGACATTCTTGC 777
Query 777 TCTTTACGCATGGATAGACAATGATGTTGGTTATTGCCAAGGAATGAGTGATCTTTGTTC 836
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 778 TCTTTACGCGTGGATAGACAATGACGTTGGTTATTGCCAAGGAATGAGTGATCTTTGTTC 837
Query 837 CCCTATGATTATGCTTCTTGAGGACGAAGCTGATGCTTTTTGGTGTTTCGAAAGATTGAT 896
||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||
Sbjct 838 CCCTATGATTATGCTTCTTGAAGACGAAGCTGATGCTTTTTGGTGTTTCGAACGGTTGAT 897
Query 897 GCGCCGATTGCGAGGGAATTTTCGTGACACGGGGAGATCAGTTGGAGTCGAAGCACAGCT 956
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 898 GCGCCGATTGCGAGGGAATTTTCGGGACACGGGGAGATCAGTTGGAGTCGAAGCACAGCT 957
Query 957 TACTCATTTGGCTTCAATCACTCAGATTATTGACCCCAAACTTCACCATCACTTAGAGAA 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TACTCATTTGGCTTCAATCACTCAGATTATTGACCCCAAACTTCACCATCACTTAGAGAA 1017
Query 1017 ATTGGGTGGTGGTGACTATCTCTTTGCTATTCGAATGATAATGGTTCAGTTCCGAAGAGA 1076
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1018 CTTGGGTGGTGGTGACTATCTCTTTGCGATTCGAATGATAATGGTTCAGTTCCGAAGAGA 1077
Query 1077 ATTCTCCTTTTGTGACTCCTTGTACCTTTGGGAGATGATGTGGGCATTAGAGTACGACCC 1136
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1078 ATTCTCTTTTTGTGACTCCTTGTACCTTTGGGAGATGATGTGGGCATTAGAGTATGACCC 1137
Query 1137 TGAAATGTATTCTCTATATGAGGAGCCTCAATTCGAGGGAGAGAGAATCGAAGGTTCCTC 1196
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1138 AGAAATGTATTCTCTATATGAGGAGCCTCAATTCGAGGGAGAGAGAACCGAAGGTTCCTC 1197
Query 1197 CAAAGGTAAACCAAAGTCGATAAACCAATGCGGGAAGTACGAGAGAGAGAACATGAAGAA 1256
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1198 CAAAGGTAAACCGAAGTCGATAAACCAATGTGGGAAGTACGAGAGAGAGAACATGAAGAA 1257
Query 1257 TGGAGGGAAAAGCGCGGAAGGTCCTTTGCCTATCTCTGTTTTCTTAGTGGCTAGTGTTTT 1316
|||||||||||| || ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1258 TGGAGGGAAAAGTGCAGAAGGTCCTTTGCCTATTTCGGTTTTCTTAGTGGCTAGTGTTTT 1317
Query 1317 GAAAGACAAGAGTTCTAAGTTAATGACCGAAGCTCGAGGACTTGATGACGTTGTAAAGAT 1376
||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1318 GAAAGACAAGAGTTCCAAGCTAATGACAGAAGCTCGAGGACTTGATGACGTTGTAAAGAT 1377
Query 1377 CTTAAACGACATAACCGGAAACTTGGATGCTAAAAAAGCCTGTACTGGTGCAATGAAACT 1436
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1378 CTTAAACGACATAACCGGAAACTTGGATGCTAAGAAAGCCTGTACTGGTGCAATGAAACT 1437
Query 1437 TCACAAGAAGTATCTTAAAAAGG 1459
||||||||||||||| |||||||
Sbjct 1438 TCACAAGAAGTATCTAAAAAAGG 1460
Score = 237 bits (128), Expect = 2e-61
Identities = 197/227 (87%), Gaps = 17/227 (7%)
Strand=Plus/Plus
Query 1459 GCCAAGAAATAGCATTGCAGAAGATTCACGAGTAGTAGCGTTTTTGTATGTTTTTATACA 1518
||||||||||||||||| |||||||||| |||||| |||||||||||||||| |||||||
Sbjct 1490 GCCAAGAAATAGCATTGGAGAAGATTCATGAGTAGCAGCGTTTTTGTATGTTATTATACA 1549
Query 1519 TATTTGATAACTCACAAAA-CCGGCGACAAAAAAGTGACTAACGATTCCTTGGGTGGCAA 1577
||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||
Sbjct 1550 TATTTGATAACTCACAAAATCCGGCGAC-AAAAAGTGATTAACGATTCCTTGGGTGG-TG 1607
Query 1578 G-AATTCTG--AAGAAA--A-G-AGCCCAATTTACACAACAACTTCTCGTTGTAAACTGT 1630
| ||| | |||||| | | ||||||| |||||||||||||||||||||||||||||
Sbjct 1608 GTAATGAAGAAAAGAAACCATGTAGCCCAACTTACACAACAACTTCTCGTTGTAAACTGT 1667
Query 1631 TCATACAAATCCACA--CAT-TTTGTAATATTTGTTTCACAAA-CCA 1673
|||||||| | | | ||| |||||||| ||||||||||||| |||
Sbjct 1668 TCATACAA--CAA-ATTCATGTTTGTAATCTTTGTTTCACAAAACCA 1711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64486784785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5