BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54790.1
Length=881
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495560 jgi|Araly1|495560|fgenesh2_kg.8__1376__AT5G54790.1 920 0.0
> Ahg495560 jgi|Araly1|495560|fgenesh2_kg.8__1376__AT5G54790.1
Length=754
Score = 920 bits (498), Expect = 0.0
Identities = 630/689 (91%), Gaps = 28/689 (4%)
Strand=Plus/Plus
Query 154 TTTTTCTCTTACAAAGTTTTCATGGAGAGTTCAATGAACAATGCCTTCATTATGAGCAAA 213
|||||||||| |||| |||||||||||||||||||||||||||||||||||||| | |||
Sbjct 92 TTTTTCTCTTCCAAATTTTTCATGGAGAGTTCAATGAACAATGCCTTCATTATGGGAAAA 151
Query 214 CATGAAACGGCCATGTTTACAGACGACCAAAATCCAGAAGAAAGTAGCTGGACGATGTAC 273
||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 152 CATGAAACGGCGACGTTTACAGGCGACCAAAATCCAGAAGAAAGTAGCTGGACGATGTAC 211
Query 274 TTTGAGGATTTCTTCGAGGCTTCTTCAAGCATAGTTGACGTCGGAGATTTCAGCTCTTCC 333
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 212 TTTGAGGATTTCTTCGAGGCTTCTTCAAGCATAGTTGACGTCGGAGATTGCAGCTCTTCC 271
Query 334 TCTGTCTCCGACGCAGCGTCATTCGTGGCCACTAAGAAGACCCTCAACGTGTCGAAGCAA 393
|| |||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 272 TCCGTCTCCGATGCAGCGTCGTTCGTGGCCACTAAGAAGACCCTCCACGTGTCGAAGCAA 331
Query 394 GAAGGATCTAATTTGGACATCAAGAGGACAAGAAATAGAGAGATTCCTTTTGGCCGTCAT 453
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
Sbjct 332 GAAGGATCTAATTTGGACATCAAGAGGACGAGAAATAGAGAGATTCCTTTTGGTCGTCGT 391
Query 454 CATGATCTTGAAGACACTGCCTCTTCTCCTTCTGGTAGCCCTAACGTCTATAGCATGATG 513
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 392 CATGATCTTGAAGACACTGCCTCTTCTCCTTCTCATAGCCCTAACGTCTATAGCATGATG 451
Query 514 AACCTACAAGACAACAACACTAGACACGGGGGTGGTATTGTGGGTGATGATGAGAAAAGA 573
|||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 452 AACCTACAGGACAACAACACTAGACACGGGGGTGGTATTGTGGCTGATGACGAGAAAAGA 511
Query 574 GTGAGTGCAGTGCCAAACCAAGGTGGACTACCAATAGACTTGAAGAAAAAAGGGCTTTGT 633
| ||||||||||| ||||||||||||| || ||||||||||||||||||| |||||||||
Sbjct 512 GAGAGTGCAGTGCAAAACCAAGGTGGATTATCAATAGACTTGAAGAAAAAGGGGCTTTGT 571
Query 634 TTAGTTCCTTTGTCTATGGTCACCAATTTTCTTGGTTGATTATAAATAATAATCCTTA-- 691
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 572 TTAGTTCCTTTGTCTATGGTCACCAATTTTCTTGGTTGATTATAAATAACAATCCTTATT 631
Query 692 CATTCttttggtttcctatatcattttttgttcattttagaatatttaatatttggtaga 751
|||||||||||||||| | || ||| | | ||||| ||||||
Sbjct 632 CATTCTTTTGGTTTCC-A-AT-ATT--------A----A---TATTT-------GGTAGA 666
Query 752 ttttttttCAGTCATATGTTATATATGTTATTCACTTAATTGTTGAGATACGCTTGTGTA 811
||||||| ||||||||||| |||||||||||||||||||||||||||||| |||| ||||
Sbjct 667 TTTTTTT-CAGTCATATGTAATATATGTTATTCACTTAATTGTTGAGATATGCTTATGTA 725
Query 812 ACAAATTACATATAGCATGTGAGTTGTAT 840
||||||||||||| ||||||||||| |||
Sbjct 726 ACAAATTACATATGGCATGTGAGTTTTAT 754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32633216952
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5