BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54800.1
Length=1663
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950130 jgi|Araly1|950130|scaffold_802017.1 1897 0.0
Ahg910917 jgi|Araly1|910917|Al_scaffold_0001_1171 551 6e-156
> Ahg950130 jgi|Araly1|950130|scaffold_802017.1
Length=1204
Score = 1897 bits (1027), Expect = 0.0
Identities = 1147/1205 (95%), Gaps = 8/1205 (1%)
Strand=Plus/Plus
Query 120 GAAAAAACCTCTCCGAGAATGGTTTTATCGGTGAAGCAAACACTCTCTCCGAAAATCGGA 179
||||||||||| | | | |||||||| |||| ||| ||||| ||| || |||| ||||||
Sbjct 5 GAAAAAACCTC-CGGCG-ATGGTTTTGTCGGCGAAACAAACCCTCCCTACGAAGATCGGA 62
Query 180 CTTTTCCGACGAAACCCTTCATCCTCACTAGGAAGATCTCCTGTTTCTCTCTCGTTTCCA 239
|||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||
Sbjct 63 CTTTTCCGACGAAACCCTTCTTCCTCACTCCGAAGATCTCCGGTTTCTCTCTCGTTTCCA 122
Query 240 TCGACGGAGCTTCCAAAACGCACCGTTTTAGCCGTGTCAAAGCCGCTTCATCTCTCTTCT 299
||||||||||||||||||||||||||||||||||| || ||||||||||| |||| |||
Sbjct 123 TCGACGGAGCTTCCAAAACGCACCGTTTTAGCCGTCTCGAAGCCGCTTCA--TCTC-TCT 179
Query 300 TCTCTGAGAGCTAAGTCTCCGGTAGTGAGATGTGAAGCTTATGAAGCTGACCGATCAGAG 359
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCTCTGAGCGCTAAGTCTCCGGTAGTGAGATGTGAAGCTTATGAAGCTGACCGATCAGAG 239
Query 360 CCTCATCCGATCGGTGATGATGCTGCGGCGGCGGAAACGAAATCAGAGGCGGCTAAGAAA 419
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CCTCAGCCGATC---GATGATGCTGCGGCGGCGGAAACGAAATCAGAGGCGGCTAAGAAA 296
Query 420 TTGAAGATCGGGATTTACTTTGCTACTTGGTGGGCTTTGAACGTTGTGTTCAATATCTAC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TTGAAGATCGGGATTTACTTTGCTACTTGGTGGGCTTTGAACGTTGTGTTCAATATCTAC 356
Query 480 AACAAGAAGGTCTTGAACGCTTATCCTTACCCATGGCTTACCTCGACGCTTTCTCTTGCC 539
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 357 AACAAGAAGGTCTTGAACGCTTATCCTTACCCATGGCTTACGTCGACGCTTTCTCTTGCC 416
Query 540 GCTGGTTCGTTGATGATGCTTATCTCTTGGGCTGTTGGGATCGTTGAGACTCCCAAGACG 599
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 417 GCTGGTTCGTTGATGATGCTAATCTCTTGGGCTGTTGGGATCGTTGAGACTCCCAAGACT 476
Query 600 GATTTTGATTTCTGGAAAACTCTTTTTCCGGTTGCTGTGGCACACACAATTGGTCATGTG 659
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 477 GATTTCGATTTCTGGAAAACTCTTTTTCCGGTTGCTGTGGCACATACAATTGGTCATGTG 536
Query 660 GCTGCAACGGTGAGTATGTCAAAGGTTGCTGTTTCTTTCACTCACATCATCAAGAGTGGT 719
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 537 GCTGCAACGGTGAGTATGTCAAAGGTTGCGGTTTCGTTCACTCACATCATCAAGAGTGGT 596
Query 720 GAACCTGCGTTTAGTGTGCTTGTCTCGAGGTTTATTTTGGGTGAAACCTTCCCTACTTCG 779
||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 597 GAACCAGCGTTTAGCGTGCTTGTCTCGAGGTTCCTTTTGGGTGAAACCTTCCCTACTTCG 656
Query 780 GTTTACTTGTCTCTCATTCCAATCATTGGTGGTTGCGCTCTGTCTGCCCTTACCGAGCTT 839
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 657 GTTTACTTGTCCCTCATTCCAATCATCGGTGGTTGCGCTCTGTCTGCCCTTACCGAGCTT 716
Query 840 AACTTCAACATGATTGGTTTCATGGGAGCTATGATTTCGAACTTGGCTTTCGTGTTCCGT 899
|||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 717 AACTTCAACATGATTGGTTTTATGGGAGCTATGATTTCGAACTTGGCGTTCGTCTTCCGT 776
Query 900 AACATCTTCTCGAAGAAGGGAATGAAGGGAAAGTCTGTGAGCGGGATGAACTACTACGCC 959
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 777 AACATCTTCTCGAAGAAGGGAATGAAGGGAAAGTCTGTGAGCGGAATGAACTACTACGCC 836
Query 960 TGTCTCTCAATGCTGTCCCTATTGATCCTCACTCCCTTTGCCATTGCTGTTGAAGGACCT 1019
|||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 837 TGTCTCTCAATGTTGTCCCTATTGATCCTCACTCCCTTTGCGATTGCGGTTGAAGGACCT 896
Query 1020 CAGATGTGGGTCGATGGCTGGCAGACAGCGCTCGCTACTGTCGGACCACAGTTTGTCTGG 1079
||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 897 CAGATGTGGGTCGATGGCTGGCAAACGGCGCTCGCTACTGTTGGACCACAGTTTGTCTGG 956
Query 1080 TGGGTGGTTGCGCAGAGTGTGTTCTATCACCTCTACAACCAAGTGTCTTACATGTCTTTA 1139
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TGGGTGGCTGCGCAGAGTGTGTTCTATCACCTCTACAACCAAGTGTCTTACATGTCTTTA 1016
Query 1140 GACCAAATCTCTCCCTTGACGTTTAGTGTTGGTAACACCATGAAACGTATCTCCGTCATT 1199
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1017 GACCAAATCTCTCCCTTGACATTTAGTGTTGGTAACACCATGAAACGTATCTCTGTCATT 1076
Query 1200 GTCTCCTCCATCATTATCTTCCGCACTCCAGTCCAGCCCGTCAATGCTCTTGGAGCAGCC 1259
||||| ||||||||||||||||||||||||||||||||||| || || |||||||| |||
Sbjct 1077 GTCTCATCCATCATTATCTTCCGCACTCCAGTCCAGCCCGTTAACGCCCTTGGAGCCGCC 1136
Query 1260 ATTGCTATCCTTGGAACCTTCTTGTATTCCCAGGCAAAGCTCTGATGCGAAAGACATAAG 1319
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1137 ATTGCTATCCTTGGAACCTTCTTGTATTCCCAGGCAAAGCTCTGATTCGGAAGACATAAG 1196
Query 1320 AGTGT 1324
|||||
Sbjct 1197 AGTGT 1201
> Ahg910917 jgi|Araly1|910917|Al_scaffold_0001_1171
Length=1179
Score = 551 bits (298), Expect = 6e-156
Identities = 709/902 (79%), Gaps = 50/902 (6%)
Strand=Plus/Plus
Query 421 TGAAGATCGGGATTTACTTTGCTACTTGGTGGGCTTTGAACGTTGTGTTCAATATCTACA 480
|||| || ||||| ||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 287 TGAATATTGGGATCTACTTCGCGACTTGGTGGGCATTGAACGTTGTGTTCAATATCTACA 346
Query 481 ACAAGAAGGTCTTGAACGCTTATCC-TTACCCATGGCTTACCT-CGACGCTTTCTCTTGC 538
|||||||||| ||||| |||| ||| |||||| ||| ||| || ||||||| ||||||||
Sbjct 347 ACAAGAAGGTTTTGAATGCTT-TCCCTTACCCGTGG-TTAACTTCGACGCTCTCTCTTGC 404
Query 539 C-GCTGGTTCGTTGATGATGCTTATCTCTTGGG-CTGTTGGGATCGTTG-AGA--CTCCC 593
| ||| || |||||||||||| ||||||||| | | || | |||| ||| ||||
Sbjct 405 TTG-TGGCTCTTTGATGATGCTTGTCTCTTGGGTCACT-GG-A--GTTGCAGAAGCTCCT 459
Query 594 AAGACGGATTTTGATTTCTGGAAAACTCTTTTTCCGGTTGCTGTGGCACACACAATTGGT 653
|| || ||| | ||||||||||||||||| || ||||| ||| ||||||| || |||||
Sbjct 460 AAAACCGATCTCGATTTCTGGAAAACTCTGTTCCCGGTGGCTTTGGCACATACGATTGGA 519
Query 654 CATGTGGCTGCAACGGTGAGTATGTC-AAAGGTTGCTGTTTCTTTCACTCACATCATCAA 712
||||| || ||||| ||||||||||| |||| | || || || ||||| |||||||||||
Sbjct 520 CATGTAGCGGCAACAGTGAGTATGTCTAAAG-TCGCAGTGTCCTTCACACACATCATCAA 578
Query 713 GAGTGGTGAACCTGCGTTTAGTGTGCTTGTCTCGAGGTTTATT-TTGGGTGAAACCTTCC 771
||||||||||| || ||||| || |||||||| || | || || || || | ||||
Sbjct 579 AAGTGGTGAACCAGCCTTTAGCGTCCTTGTCTCAAGCCTC-TTCTTAGGCGAGGCATTCC 637
Query 772 CT--ACTTCGGTTTACTTGTCTCTCATT-CCAATCATTGGTGGTTGCGCTCT-GTCTGCC 827
|| || | | ||||| | || ||| || || || ||||| || || ||||| | ||||
Sbjct 638 CTTTACCT-G-TTTACCTCTCCCTC-TTACCCATTATTGGAGGATGTGCTCTTG-CTGCA 693
Query 828 CTTACCGAGCTTAACTTCAACATGATTGG-TTTCATGGGAGCTATGATTTCGAACTTGGC 886
| |||||||| |||||||| ||||| || ||| |||||||||||||| ||||| |||||
Sbjct 694 GTCACCGAGCTCAACTTCAATATGATCGGGTTT-ATGGGAGCTATGATATCGAATTTGGC 752
Query 887 -TTTCGTGTTCCGTAACATCTTCTCGAAGAAGGGAATGAAGGGAAAGTCTGTGAGCGGGA 945
||| ||||| |||||||| ||||| |||||||| |||||||| ||||| ||||| ||||
Sbjct 753 ATTT-GTGTTTCGTAACATATTCTCAAAGAAGGGGATGAAGGGGAAGTCAGTGAGTGGGA 811
Query 946 TGAACTACTACGCCTGTCTC-TCAATGCTGTCCCTAT-TGATCCTCACTCCCTTT-GCCA 1002
|||| ||||| || || || || ||| |||| || | | || ||||||| ||| ||||
Sbjct 812 TGAATTACTATGCTTG-CTTATCTATGATGTCTCT-TCTCATTGTCACTCC-TTTCGCCA 868
Query 1003 TTGCTGTTGAAGGACCTCAGATGTGGG-TCGATGGCTGGCAGA-CAGC-G-CTCGCTACT 1058
|||| || ||||| || || ||||||| | | ||| ||||| | | || | ||| | | |
Sbjct 869 TTGCCGTGGAAGGTCCCCAAATGTGGGCT-GCTGGTTGGCAAAAC-GCCGTCTCCCAAAT 926
Query 1059 GTCGGACCACAGTTTGTCTGGTGGGTGGTTGCGCAGAGTGTGTTCTATCACCTCTACAAC 1118
||||||| | || ||||||||||| || || |||||||||||||| || | || ||
Sbjct 927 --CGGACCAAACTTCGTCTGGTGGGTAGTGGCACAGAGTGTGTTCTACCATTTGTATAAT 984
Query 1119 CAAGTGTCTTACATGTCTTT-AGACCAAATCTCTCC-CTTGACGTTTAGTGTTGGTAACA 1176
||||| || |||||||| | | |||| || || || || || ||||| ||||| ||||
Sbjct 985 CAAGTCTCATACATGTCCCTCA-ACCAGATTTCGCCACTC-ACATTTAGCGTTGGAAACA 1042
Query 1177 CCATGAAACGTATCTCCGTCATTGTCTCCTCCATCATTATCTTCCGCA-CTCCAGTCCAG 1235
| ||||| || ||||| ||||| ||| |||| ||||| ||||||| | | ||||| |
Sbjct 1043 CAATGAAGCGGATCTCAGTCATCGTCGCCTCAATCATCATCTTCCAAAAC-CCAGTTAAA 1101
Query 1236 CCCGTCAATGCTCTTGGAGCAGCCATTGCTATCCTTGGAACCTTCTTGTATTCCCAGGCA 1295
|| |||||||| ||||| || |||||||| || |||||||| ||| | ||||| |||| |
Sbjct 1102 CCTGTCAATGCCCTTGGTGCTGCCATTGCGATTCTTGGAACTTTCATCTATTCTCAGGTA 1161
Query 1296 AA 1297
||
Sbjct 1162 AA 1163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62353731065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5