BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54810.1
Length=1671
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495562 jgi|Araly1|495562|fgenesh2_kg.8__1378__AT5G54810.1 2573 0.0
Ahg492090 jgi|Araly1|492090|fgenesh2_kg.7__1523__AT4G27070.1 1417 0.0
> Ahg495562 jgi|Araly1|495562|fgenesh2_kg.8__1378__AT5G54810.1
Length=1610
Score = 2573 bits (1393), Expect = 0.0
Identities = 1545/1617 (96%), Gaps = 16/1617 (1%)
Strand=Plus/Plus
Query 30 AGAGAGATTCATTCAGTAATGGCAGCCTCAGGCACCTCTGCTACTTTCAGAGCCTCCGTT 89
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 AGAGAGATTCATTCAGTAATGGCAGCCTCAGGCACCGCTGCTACTTTCAGAGCCTCCGTT 60
Query 90 TCTTCAGCTCCTTC--C-TCTTCTTCCCAATTGACCCATTTGA-A--ATCACCCTTCAAA 143
|||||||||||||| | ||||||||||||||||||||||||| | |||||||||||||
Sbjct 61 TCTTCAGCTCCTTCTTCTTCTTCTTCCCAATTGACCCATTTGAGATCATCACCCTTCAAA 120
Query 144 GCTGTCAAATATACGCCTCTGCCATCGTCTCGCTCCAAGTCATCATCCTTCTCCGTCTCC 203
||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 GCTCTCAAATTTACGCCTCTGCCATCGTCTCGCTCCAAG---TCATCCTTCTCCGTCTCC 177
Query 204 TGCACCATCGCCAAGGACCCGCCTGTTCTCATGGCCGCCGGATCTGACCCGGCCCTGTGG 263
||||| |||||||| |||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 178 TGCACTATCGCCAAAGACCCGCCTGTTCTCATGACCGCCGGATCTGACCCGACCCTGTGG 237
Query 264 CAACGACCCGATTCGTTCGGTCGGTTTGGGAAGTTTGGTGGGAAGTATGTACCTGAAACC 323
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 238 CAACGACCCGATTCGTTCGGTCGGTTTGGGAAGTTTGGTGGGAAGTATGTACCTGAGACC 297
Query 324 CTTATGCACGCTCTATCTGAGCTTGAATCCGCTTTCTATGCTCTTGCCACCGACGATGAT 383
||||||||||| || |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 298 CTTATGCACGCGCTCTCTGAGCTCGAATCCGCTTTCTATGCTCTCGCCACCGACGATGAT 357
Query 384 TTCCAGAGAGAGTTGGCTGGAATCTTGAAGGACTATGTGGGTAGAGAAAGTCCTCTGTAT 443
|||||||| |||||||| || |||||||| |||||||||||||| |||||||||||||||
Sbjct 358 TTCCAGAGGGAGTTGGCAGGGATCTTGAAAGACTATGTGGGTAGGGAAAGTCCTCTGTAT 417
Query 444 TTTGCAGAGAGGCTTACGGAGCATTACAGGCGCGAGAATGGCGAAGGGCCTCTTATATAC 503
|||||||||||||| || ||||||||| |||||||||||||||||||||| ||||||||
Sbjct 418 TTTGCAGAGAGGCTAACAGAGCATTACCGGCGCGAGAATGGCGAAGGGCCGCTTATATAT 477
Query 504 TTGAAGAGAGAAGACTTGAATCACACAGGAGCTCACAAGATTAACAACGCTGTGGCTCAG 563
|||||||| |||||| |||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 478 TTGAAGAGGGAAGACCTGAACCACACAGGTGCTCACAAGATTAACAATGCTGTGGCTCAG 537
Query 564 GCTCTTCTTGCTAAGCGGTTGGGGAAGAAGAGGATTATTGCTGAGACAGGAGCGGGTCAA 623
|| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GCACTTCTTGCCAAGCGTTTGGGGAAGAAGAGGATTATTGCTGAGACAGGAGCGGGTCAA 597
Query 624 CATGGTGTGGCTACAGCTACTGTGTGTGCCCGTTTTGGTTTGGAGTGTATTATCTATATG 683
||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||
Sbjct 598 CATGGTGTGGCTACAGCCACTGTGTGTGCCCGTTTTGGTCTAGAGTGTATTATCTATATG 657
Query 684 GGTGCTCAAGATATGGAGAGACAAGCACTCAATGTGTTCAGAATGCGACTTCTTGGTGCC 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GGTGCTCAAGATATGGAGAGACAAGCACTCAATGTGTTCAGAATGCGACTTCTTGGTGCC 717
Query 744 GAGGTGAGAGGAGTCCACTCTGGAACAGCGACATTGAAGGATGCGACATCTGAAGCGATA 803
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GAGGTGAGAGGAGTTCACTCTGGAACAGCGACATTGAAGGATGCGACATCTGAAGCGATA 777
Query 804 AGAGATTGGGTGACAAATGTGGAGACTACCCATTACATATTGGGATCTGTGGCGGGTCCT 863
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 778 AGAGATTGGGTGACAAATGTTGAGACTACCCATTACATATTGGGATCTGTGGCGGGTCCT 837
Query 864 CATCCTTACCCCATGATGGTCAGAGACTTTCACGCTGTGATTGGTAAAGAAACAAGGAAA 923
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 838 CATCCTTACCCCATGATGGTCAGAGACTTTCACGCTGTGATTGGTAAAGAAACAAGGAGA 897
Query 924 CAAGCGTTGGAGAAATGGGGCGGGAAGCCGGATGTCTTGGTGGCTTGTGTCGGTGGTGGT 983
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 898 CAAGCGTTGGAGAAATGGGGTGGGAAGCCGGATGTCTTGGTGGCTTGTGTCGGTGGTGGT 957
Query 984 TCAAACGCTATGGGACTCTTCCATGAATTTGTGAATGACACAGAGGTCCGGATGATCGGT 1043
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 958 TCAAACGCTATGGGACTCTTCCATGAATTTGTAAATGACACAGAGGTCCGGATGATCGGT 1017
Query 1044 GTGGAAGCAGCGGGATTCGGATTGGACAGTGGCAAACACGCTGCTACATTGACAAAGGGA 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GTGGAAGCAGCGGGATTCGGATTGGACAGTGGCAAACACGCTGCTACATTGACAAAGGGA 1077
Query 1104 GATGTTGGTGTCCTCCATGGAGCTATGAGTTACTTGCTGCAAGATGATGATGGACAAATC 1163
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GATGTCGGTGTCCTCCATGGAGCTATGAGTTACTTGCTGCAAGATGATGATGGACAAATC 1137
Query 1164 ATTGAACCACACTCCATCAGTGCAGGATTGGACTACCCTGGAGTCGGACCCGAGCACAGT 1223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 ATTGAACCACACTCCATCAGTGCAGGATTGGACTACCCTGGAGTCGGACCCGAGCACAGT 1197
Query 1224 TTCTTTAAAGACATGGGACGGGCTGAATACTATAGCATAACCGACGAAGAAGCGTTGGAA 1283
|| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1198 TTTTTTAAAGACATGGGACGGGCTGAATACTATAGCATAACCGATGAGGAAGCGTTGGAA 1257
Query 1284 GCGTTCAAGAGAGTGTCGCGGTTAGAGGGAATCATTCCAGCACTGGAGACCTCACACGCA 1343
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1258 GCGTTCAAGAGAGTGTCGCGGTTAGAGGGAATCATTCCAGCACTCGAGACCTCACACGCA 1317
Query 1344 CTAGCTTACCTCGAGAAGCTATGTCCCACATTATCAGACGGGACGAGAGTGGTCTTGAAC 1403
|||||||||||||||||||| |||||||||||||| ||||| |||||||| || ||||||
Sbjct 1318 CTAGCTTACCTCGAGAAGCTGTGTCCCACATTATCGGACGGAACGAGAGTAGTATTGAAC 1377
Query 1404 TTCAGCGGAAGAGGAGATAAAGATGTTCAGACAGTGGCTAAATATCTTGATGTTTGAAGA 1463
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1378 TTCAGCGGAAGAGGAGATAAAGATGTTCAGACAGTGGCTAAATATCTTGATGTTTGAA-A 1436
Query 1464 GAGAAACACTTATGTTTGTTTTT-CAGTTATTCA-GACAGAATGAAATCCTTTTTGTACT 1521
||||||||||| ||||||||||| |||||||||| |||| | ||||||||||||||||||
Sbjct 1437 GAGAAACACTTTTGTTTGTTTTTTCAGTTATTCAAGACA-A-TGAAATCCTTTTTGTACT 1494
Query 1522 TGTAATCTGTTT-GTACTTTACTTCTCTCTGGTCAGTACGTTTCCAACAAAATTGGAAAT 1580
||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1495 TGTAATCTGTTAAGTACTTTGCTTCTCTCTGGTCAGGACGTTTCCAACAAAATTGGAAAT 1554
Query 1581 AGAAAAAGATTACGAAGAGAACGAAATTTGAATAAATGTATTATCAATAAAATAAAA 1637
|||||||||||||||||||||| ||| |||||||||||||| || ||||||| ||||
Sbjct 1555 AGAAAAAGATTACGAAGAGAACAAAACTTGAATAAATGTATCATGAATAAAA-AAAA 1610
> Ahg492090 jgi|Araly1|492090|fgenesh2_kg.7__1523__AT4G27070.1
Length=1822
Score = 1417 bits (767), Expect = 0.0
Identities = 1233/1454 (85%), Gaps = 48/1454 (3%)
Strand=Plus/Plus
Query 40 ATTCAGTAATGG-CAGCCTCAGGCACCTCTGCTACTTTCAGAGCCTCCGTTTCTTCAGCT 98
||||| |||||| || || |||||||| |||||||||||||| |||||| | |||||
Sbjct 195 ATTCACTAATGGCCA-CCGCAGGCACCGCTGCTACTTTCAGACCCTCCG--T-TTCAG-- 248
Query 99 CCTTCCTCTTCTTCCCAATTGACCCATTTGAAATCACCCTTCAAAGCT-GTCAAATATAC 157
|||||||| || |||| | ||| ||| |||| |||| || ||||| |||
Sbjct 249 -------CTTCTTCCGAAGCAACCCGTCTGAGATCGCCCTCCAAA-CTCCCCAAATTTAC 300
Query 158 GCCTCTGCCATCGTCTCGCTCCA-AGTCATCATC--C-TTCTCCGTCTCCTGCACCATCG 213
|||||||||||||||||||| || ||| || || | || |||||||| || |||||||
Sbjct 301 GCCTCTGCCATCGTCTCGCT-CACGGTCCTCTTCTTCGTTTTCCGTCTCTTGTACCATCG 359
Query 214 CCAAGGACCCGCCTG--TTC-T--C--AT-----GGCCGCCGGATCTGACCCGGCCCTGT 261
| ||||||||| ||| ||| | | || |||||| |||||||| ||| || |||
Sbjct 360 CTAAGGACCCGACTGTTTTCATGGCGGATACGGAGGCCGCTGGATCTGATCCGACCATGT 419
Query 262 GGCAACGACCCGATTCGTTCGGTCGGTTTGGGAAGTTTGGTGGGAAGTATGTACCTGAAA 321
||||||| || ||||| ||||||||||| ||||||||||| ||||||||||| || ||||
Sbjct 420 GGCAACGGCCTGATTCATTCGGTCGGTTCGGGAAGTTTGGCGGGAAGTATGTCCCCGAAA 479
Query 322 CCCTTATGCACGCTCTATCTGAGCTTGAATCCGCTTTCTATGCTCTTGCCACCGACGATG 381
| || |||||||| || ||||| || ||| | ||||||||| | || ||||||||||| |
Sbjct 480 CTCTAATGCACGCCCTCTCTGAACTCGAAACGGCTTTCTATTCGCTCGCCACCGACGAAG 539
Query 382 ATTTCCAGAGAGAGTTGGCTGGA-ATCTTGAAGGACTATGTGGGTAGAGAAAGTCCTCTG 440
||||||||||||| ||||| || |||||||| |||||||||||| | |||||||||||
Sbjct 540 ATTTCCAGAGAGAATTGGC-AGAGATCTTGAAAGACTATGTGGGTCGGGAAAGTCCTCTT 598
Query 441 TATTTTGCAGAGAGGCTTACGGAGCATTACAGGCGCGAGAATGGCGAAGGGCCTCTTATA 500
|| |||||||||||||| || ||||||||| | || || || || ||||| || || |||
Sbjct 599 TACTTTGCAGAGAGGCTCACAGAGCATTACCGCCGAGAAAACGGGGAAGGACCCCTCATA 658
Query 501 TACTTGAAGAGAGAAGACTTGAATCACACAGGAGCTCACAAGATTAACAACGCTGTGGCT 560
||| | || || ||||||||||| ||||| || ||||||||||| |||||||||||||||
Sbjct 659 TACCTCAAAAGGGAAGACTTGAACCACACCGGTGCTCACAAGATCAACAACGCTGTGGCT 718
Query 561 CAGGCTCTTCTTGCTAAGCGGT-TGGGGAAGAAGA-GGATTATTGCTGAGACAGGAGCGG 618
||||||||||| || |||| || | || ||||| | ||||||||||||||||||| || |
Sbjct 719 CAGGCTCTTCTCGCCAAGC-GTCTAGGAAAGAA-ACGGATTATTGCTGAGACAGGGGCTG 776
Query 619 GTCAACATGGTGTGGCTACAGCTACTGTGTGTGCCCGTTTTGGTTTGGAGTGTATTATCT 678
||||||||||||| || |||||||| |||||||| ||||| |||||| |||| |||||||
Sbjct 777 GTCAACATGGTGTAGCCACAGCTACCGTGTGTGCACGTTTCGGTTTGCAGTGCATTATCT 836
Query 679 ATATGGGTGCTCAAGATATGGAGAGACAAGCACTCAATGTGTTCAGAATGCGACTTCTTG 738
| |||||||||||||| |||||||||||||| || ||||||||||||||||| ||||| |
Sbjct 837 ACATGGGTGCTCAAGACATGGAGAGACAAGCTCTTAATGTGTTCAGAATGCGTCTTCTCG 896
Query 739 GTGCCGAGGTGAGAGGAGTCCACTCTGGAACAGCGACATTGAAGGATGCGACATCTGAAG 798
|||| ||||| || |||||||||||||||||||| || || ||||| || || |||||||
Sbjct 897 GTGCTGAGGTAAGGGGAGTCCACTCTGGAACAGCCACTTTAAAGGACGCAACTTCTGAAG 956
Query 799 CGATAAGAGATTGGGTGACAAATGTGGAGACTACCCATTACATATTGGGATCTGTGGCGG 858
| ||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 957 CTATAAGGGATTGGGTGACAAATGTGGAGACTACACATTACATATTGGGATCCGTTGCGG 1016
Query 859 GTCCTCATCCTTACCCCATGATGGTCAGAGACTTTCACGCTGTGATTGGTAAAGAAACAA 918
|||||||||||||||| ||||||||||| |||||||| || |||||||||||||||||||
Sbjct 1017 GTCCTCATCCTTACCCTATGATGGTCAGGGACTTTCATGCCGTGATTGGTAAAGAAACAA 1076
Query 919 GGAAACAAGCGT-TGGAGAAATGGGGCGGGAAGCCGGATG-TCTTGGTGGCTTGTGTCGG 976
||| |||||| | |||||||||||||||||||||| |||| || |||| |||||||||||
Sbjct 1077 GGAGACAAGC-TATGGAGAAATGGGGCGGGAAGCCTGATGTTC-TGGTTGCTTGTGTCGG 1134
Query 977 TGGTGGTTCAAACGCTATGGGACTCTTCCATGAATTTGT-GAATGACACAGAGGTCCGGA 1035
|||||||||||| || ||||||||||||||||||||||| | ||||||||||||| ||||
Sbjct 1135 TGGTGGTTCAAATGCCATGGGACTCTTCCATGAATTTGTCG-ATGACACAGAGGTTCGGA 1193
Query 1036 TGATCGGTGTGGAAGCAGCGGGATTCGGATTGGACAGTGGCAAACACGCTGCTACATTGA 1095
|||| ||||||||||| || ||||| ||||||||||| |||||||||||||| |||||||
Sbjct 1194 TGATTGGTGTGGAAGCCGCTGGATTTGGATTGGACAGCGGCAAACACGCTGCCACATTGA 1253
Query 1096 CAAAGGGAGATGTTGGTGTCCTCCATGGAGCTATGAGTTACTTGCTGCAAGATGATGATG 1155
|||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 CAAAAGGAGATGTCGGTGTACTCCATGGAGCTATGAGTTACTTGCTGCAAGATGATGATG 1313
Query 1156 GACAAATCATTGAACCACACTCCATCAGTGCAGGATTGGACTACCCTGGAGTCGGACCCG 1215
| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
Sbjct 1314 GCCAAATCATTGAACCACACTCCATCAGTGCCGGATTGGATTACCCTGGAGTCGGACCTG 1373
Query 1216 AGCACAGTTTCTTTAAAGACATGGGACGGGCTGAATACTATAGCATAACCGACGAAGAAG 1275
|||| |||||| |||||||||||||||||||||| ||||||||| | ||||| |||||||
Sbjct 1374 AGCATAGTTTCCTTAAAGACATGGGACGGGCTGAGTACTATAGCGTTACCGATGAAGAAG 1433
Query 1276 CGTTGGAAGCGTTCAAGAGAGTGTCGCGGTTAGAGGGAATCATTCCAGCACTGGAGACCT 1335
| || ||||| |||||||||||||| ||||| |||||||| || || ||||||||||| |
Sbjct 1434 CCTTAGAAGCTTTCAAGAGAGTGTCTCGGTTGGAGGGAATAATCCCGGCACTGGAGACAT 1493
Query 1336 CACACGCACTAGCTTACCTCGAGAAGCTATGTCCCACATTATCAGACGGGACGAGAGTGG 1395
| ||||| | || | || |||||||| ||||| || ||| | || || || |||||||
Sbjct 1494 CGCACGCGTTGGCCCATCTAGAGAAGCTTTGTCCGACGTTACCTGATGGAACCAGAGTGG 1553
Query 1396 TCTTGAACTTCAGCGGAAGAGGAGATAAAGATGTTCAGACAGTGG-CTAAATATCTTGAT 1454
|||| |||||||| || ||||| || || ||||||||||| | | |||||||| ||
Sbjct 1554 TCTTAAACTTCAGTGGGAGAGGCGACAAGGATGTTCAGACTGCAATC-AAATATCTCGAA 1612
Query 1455 GTTTGAAGAG-AGA 1467
|||| ||||| |||
Sbjct 1613 GTTTAAAGAGTAGA 1626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62658453025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5